EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000017430 (Gene tree)
Gene ID: -
Gene Symbol: zgc:110796
Alias: cb676|msi1
Full Name: zgc:110796
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 15856 bases
Position: chrKL652702.1:1125123-1140978
Accession: ZDB-GENE-050306-36
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000014736	RRM_1	PF00076.22	3.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000022646	-	490	-	ENSCVAP00000014736	138 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000017430's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000017430's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000017430	zgc:110796	76	43.810	ENSCVAG00000019790	hnrnpd	57	44.444
ENSCVAG00000017430	zgc:110796	97	40.909	ENSCVAG00000002489	-	56	40.299
ENSCVAG00000017430	zgc:110796	92	41.270	ENSCVAG00000019772	hnrnpaba	51	40.000
ENSCVAG00000017430	zgc:110796	94	66.418	ENSCVAG00000009100	MSI1	54	66.418
ENSCVAG00000017430	zgc:110796	94	53.731	ENSCVAG00000017075	msi2a	58	53.731
ENSCVAG00000017430	zgc:110796	68	38.947	ENSCVAG00000004853	cirbpa	51	38.947

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000017430	zgc:110796	94	67.164	ENSAPOG00000023458	-	51	67.164	Acanthochromis_polyacanthus
ENSCVAG00000017430	zgc:110796	94	73.134	ENSAPOG00000003191	MSI1	51	73.134	Acanthochromis_polyacanthus
ENSCVAG00000017430	zgc:110796	78	67.857	ENSACIG00000017754	-	64	67.857	Amphilophus_citrinellus
ENSCVAG00000017430	zgc:110796	66	83.516	ENSACIG00000018210	zgc:110796	97	83.516	Amphilophus_citrinellus
ENSCVAG00000017430	zgc:110796	94	73.134	ENSAOCG00000003804	MSI1	51	73.134	Amphiprion_ocellaris
ENSCVAG00000017430	zgc:110796	94	73.134	ENSAPEG00000003245	MSI1	51	73.134	Amphiprion_percula
ENSCVAG00000017430	zgc:110796	94	56.429	ENSATEG00000017059	MSI1	54	56.429	Anabas_testudineus
ENSCVAG00000017430	zgc:110796	94	65.926	ENSATEG00000023779	-	51	65.926	Anabas_testudineus
ENSCVAG00000017430	zgc:110796	94	59.701	ENSANAG00000027901	-	55	59.701	Aotus_nancymaae
ENSCVAG00000017430	zgc:110796	85	92.308	ENSACLG00000011230	MSI1	99	92.308	Astatotilapia_calliptera
ENSCVAG00000017430	zgc:110796	94	66.418	ENSACLG00000000117	-	51	66.418	Astatotilapia_calliptera
ENSCVAG00000017430	zgc:110796	94	61.194	ENSBTAG00000009800	MSI1	50	61.194	Bos_taurus
ENSCVAG00000017430	zgc:110796	94	61.194	ENSCATG00000030019	MSI1	50	61.194	Cercocebus_atys
ENSCVAG00000017430	zgc:110796	94	61.194	ENSCSAG00000002265	MSI1	61	61.194	Chlorocebus_sabaeus
ENSCVAG00000017430	zgc:110796	94	62.687	ENSCPBG00000011349	MSI1	50	62.687	Chrysemys_picta_bellii
ENSCVAG00000017430	zgc:110796	94	65.672	ENSCSEG00000008352	-	54	65.672	Cynoglossus_semilaevis
ENSCVAG00000017430	zgc:110796	94	73.134	ENSCSEG00000005834	-	51	73.134	Cynoglossus_semilaevis
ENSCVAG00000017430	zgc:110796	68	90.426	ENSDARG00000041299	zgc:110796	100	90.426	Danio_rerio
ENSCVAG00000017430	zgc:110796	94	61.194	ENSEASG00005004736	MSI1	52	61.194	Equus_asinus_asinus
ENSCVAG00000017430	zgc:110796	94	66.418	ENSFHEG00000022446	MSI1	51	66.418	Fundulus_heteroclitus
ENSCVAG00000017430	zgc:110796	94	74.627	ENSFHEG00000003560	-	51	74.627	Fundulus_heteroclitus
ENSCVAG00000017430	zgc:110796	94	65.672	ENSGMOG00000001006	MSI1	51	65.672	Gadus_morhua
ENSCVAG00000017430	zgc:110796	94	65.672	ENSGACG00000012679	MSI1	55	65.672	Gasterosteus_aculeatus
ENSCVAG00000017430	zgc:110796	94	61.940	ENSGAGG00000016037	MSI1	53	61.940	Gopherus_agassizii
ENSCVAG00000017430	zgc:110796	94	72.388	ENSHBUG00000021921	MSI1	51	72.388	Haplochromis_burtoni
ENSCVAG00000017430	zgc:110796	94	66.418	ENSHBUG00000011841	-	51	66.418	Haplochromis_burtoni
ENSCVAG00000017430	zgc:110796	94	55.072	ENSHCOG00000012067	-	86	53.390	Hippocampus_comes
ENSCVAG00000017430	zgc:110796	78	66.667	ENSHCOG00000012019	MSI1	51	66.667	Hippocampus_comes
ENSCVAG00000017430	zgc:110796	94	62.687	ENSIPUG00000001976	msi1	50	62.687	Ictalurus_punctatus
ENSCVAG00000017430	zgc:110796	94	61.194	ENSJJAG00000010463	Msi1	50	61.194	Jaculus_jaculus
ENSCVAG00000017430	zgc:110796	94	60.448	ENSJJAG00000010643	-	54	60.448	Jaculus_jaculus
ENSCVAG00000017430	zgc:110796	78	68.468	ENSKMAG00000019877	-	51	68.468	Kryptolebias_marmoratus
ENSCVAG00000017430	zgc:110796	94	66.418	ENSKMAG00000011251	MSI1	53	87.912	Kryptolebias_marmoratus
ENSCVAG00000017430	zgc:110796	94	66.418	ENSLBEG00000008789	MSI1	54	66.418	Labrus_bergylta
ENSCVAG00000017430	zgc:110796	94	73.134	ENSLBEG00000001375	-	51	73.134	Labrus_bergylta
ENSCVAG00000017430	zgc:110796	66	87.912	ENSLOCG00000008618	zgc:110796	57	87.912	Lepisosteus_oculatus
ENSCVAG00000017430	zgc:110796	94	61.194	ENSMNEG00000040034	MSI1	52	61.194	Macaca_nemestrina
ENSCVAG00000017430	zgc:110796	94	65.672	ENSMAMG00000002279	MSI1	51	65.672	Mastacembelus_armatus
ENSCVAG00000017430	zgc:110796	94	71.642	ENSMAMG00000018426	-	51	71.642	Mastacembelus_armatus
ENSCVAG00000017430	zgc:110796	94	72.388	ENSMZEG00005026892	MSI1	51	72.388	Maylandia_zebra
ENSCVAG00000017430	zgc:110796	94	66.418	ENSMZEG00005000340	-	54	66.418	Maylandia_zebra
ENSCVAG00000017430	zgc:110796	78	48.529	ENSMGAG00000016518	-	63	48.529	Meleagris_gallopavo
ENSCVAG00000017430	zgc:110796	78	63.393	ENSMAUG00000016820	Msi1	65	63.393	Mesocricetus_auratus
ENSCVAG00000017430	zgc:110796	94	61.194	ENSMICG00000033181	MSI1	51	61.194	Microcebus_murinus
ENSCVAG00000017430	zgc:110796	78	65.179	ENSMMOG00000010492	MSI1	51	65.179	Mola_mola
ENSCVAG00000017430	zgc:110796	94	55.224	ENSMMOG00000012265	-	51	55.224	Mola_mola
ENSCVAG00000017430	zgc:110796	78	67.568	ENSMALG00000001426	-	51	67.568	Monopterus_albus
ENSCVAG00000017430	zgc:110796	94	66.418	ENSMALG00000017889	MSI1	51	66.418	Monopterus_albus
ENSCVAG00000017430	zgc:110796	94	61.194	MGP_CAROLIEiJ_G0027626	Msi1	54	58.586	Mus_caroli
ENSCVAG00000017430	zgc:110796	94	61.194	ENSMUSG00000054256	Msi1	54	58.586	Mus_musculus
ENSCVAG00000017430	zgc:110796	94	61.194	MGP_PahariEiJ_G0024206	Msi1	54	58.586	Mus_pahari
ENSCVAG00000017430	zgc:110796	94	61.194	MGP_SPRETEiJ_G0028624	Msi1	54	58.586	Mus_spretus
ENSCVAG00000017430	zgc:110796	94	66.418	ENSNBRG00000000841	-	54	66.418	Neolamprologus_brichardi
ENSCVAG00000017430	zgc:110796	66	96.703	ENSNBRG00000018002	zgc:110796	97	96.703	Neolamprologus_brichardi
ENSCVAG00000017430	zgc:110796	91	48.837	ENSODEG00000006328	MSI1	51	48.837	Octodon_degus
ENSCVAG00000017430	zgc:110796	94	66.418	ENSONIG00000011182	MSI1	51	66.418	Oreochromis_niloticus
ENSCVAG00000017430	zgc:110796	94	65.672	ENSORLG00000019978	-	51	65.672	Oryzias_latipes
ENSCVAG00000017430	zgc:110796	94	73.134	ENSORLG00000029593	MSI1	51	73.134	Oryzias_latipes
ENSCVAG00000017430	zgc:110796	94	73.134	ENSORLG00020008266	MSI1	52	65.000	Oryzias_latipes_hni
ENSCVAG00000017430	zgc:110796	94	73.134	ENSORLG00015003916	MSI1	51	73.134	Oryzias_latipes_hsok
ENSCVAG00000017430	zgc:110796	94	66.418	ENSOMEG00000017536	MSI1	51	66.418	Oryzias_melastigma
ENSCVAG00000017430	zgc:110796	94	73.881	ENSOMEG00000002272	-	51	73.881	Oryzias_melastigma
ENSCVAG00000017430	zgc:110796	94	61.194	ENSPTRG00000005531	MSI1	50	61.194	Pan_troglodytes
ENSCVAG00000017430	zgc:110796	94	68.657	ENSPKIG00000016497	MSI1	54	68.657	Paramormyrops_kingsleyae
ENSCVAG00000017430	zgc:110796	94	64.925	ENSPKIG00000023575	-	51	64.925	Paramormyrops_kingsleyae
ENSCVAG00000017430	zgc:110796	82	58.974	ENSPSIG00000016295	-	95	58.974	Pelodiscus_sinensis
ENSCVAG00000017430	zgc:110796	78	64.286	ENSPMGG00000000514	MSI1	52	64.286	Periophthalmus_magnuspinnatus
ENSCVAG00000017430	zgc:110796	94	66.418	ENSPFOG00000013113	MSI1	51	66.418	Poecilia_formosa
ENSCVAG00000017430	zgc:110796	94	74.627	ENSPLAG00000012431	-	50	74.627	Poecilia_latipinna
ENSCVAG00000017430	zgc:110796	94	66.418	ENSPLAG00000014025	-	51	66.418	Poecilia_latipinna
ENSCVAG00000017430	zgc:110796	94	66.418	ENSPMEG00000012796	MSI1	54	66.418	Poecilia_mexicana
ENSCVAG00000017430	zgc:110796	69	71.134	ENSPREG00000020265	zgc:110796	82	71.134	Poecilia_reticulata
ENSCVAG00000017430	zgc:110796	88	58.268	ENSPREG00000021416	-	52	58.268	Poecilia_reticulata
ENSCVAG00000017430	zgc:110796	94	61.194	ENSPCOG00000017341	MSI1	51	61.194	Propithecus_coquereli
ENSCVAG00000017430	zgc:110796	94	72.388	ENSPNYG00000004379	MSI1	51	72.388	Pundamilia_nyererei
ENSCVAG00000017430	zgc:110796	94	66.418	ENSPNYG00000002529	-	51	66.418	Pundamilia_nyererei
ENSCVAG00000017430	zgc:110796	94	64.179	ENSPNAG00000019337	msi1	51	64.179	Pygocentrus_nattereri
ENSCVAG00000017430	zgc:110796	78	64.286	ENSSFOG00015005350	MSI1	50	63.964	Scleropages_formosus
ENSCVAG00000017430	zgc:110796	94	73.134	ENSSDUG00000022697	-	51	73.134	Seriola_dumerili
ENSCVAG00000017430	zgc:110796	94	66.418	ENSSDUG00000001027	MSI1	51	66.418	Seriola_dumerili
ENSCVAG00000017430	zgc:110796	94	66.418	ENSSLDG00000016832	MSI1	54	66.418	Seriola_lalandi_dorsalis
ENSCVAG00000017430	zgc:110796	94	61.194	ENSSPUG00000015741	MSI1	50	61.194	Sphenodon_punctatus
ENSCVAG00000017430	zgc:110796	94	54.167	ENSSPAG00000015573	zgc:110796	82	54.167	Stegastes_partitus
ENSCVAG00000017430	zgc:110796	94	61.194	ENSSSCG00000029365	MSI1	52	61.194	Sus_scrofa
ENSCVAG00000017430	zgc:110796	69	84.211	ENSTRUG00000021586	-	95	84.211	Takifugu_rubripes
ENSCVAG00000017430	zgc:110796	94	64.234	ENSTNIG00000011469	MSI1	53	64.234	Tetraodon_nigroviridis
ENSCVAG00000017430	zgc:110796	84	51.667	ENSTNIG00000019814	-	51	51.667	Tetraodon_nigroviridis
ENSCVAG00000017430	zgc:110796	78	63.393	ENSUAMG00000015514	MSI1	63	63.393	Ursus_americanus
ENSCVAG00000017430	zgc:110796	94	60.448	ENSXETG00000012216	msi1	52	60.448	Xenopus_tropicalis
ENSCVAG00000017430	zgc:110796	94	74.627	ENSXMAG00000018237	-	51	74.627	Xiphophorus_maculatus
ENSCVAG00000017430	zgc:110796	94	66.418	ENSXMAG00000027103	MSI1	54	54.545	Xiphophorus_maculatus