EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000017583 (Gene tree)
Gene ID: 107099910
Gene Symbol: blm
Alias: -
Full Name: Bloom syndrome protein homolog
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 12624 bases
Position: chrKL653418.1:123012-135635
Accession: 107099910
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000014591	HRDC	PF00570.23	4.7e-14	1	1
ENSCVAP00000014694	HRDC	PF00570.23	6.6e-14	1	1
ENSCVAP00000014694	BDHCT	PF08072.11	1.9e-19	1	1
ENSCVAP00000029503	BDHCT	PF08072.11	3.8e-17	1	1
ENSCVAP00000014591	BDHCT	PF08072.11	9.8e-15	1	1
ENSCVAP00000014591	DEAD	PF00270.29	3.9e-19	1	1
ENSCVAP00000014694	DEAD	PF00270.29	5.8e-19	1	1
ENSCVAP00000029503	DEAD	PF00270.29	8.4e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000022456	-	2709	-	ENSCVAP00000014591	902 (aa)	-	-
ENSCVAT00000031212	-	3276	XM_015398214	ENSCVAP00000014694	1091 (aa)	XP_015253700	-
ENSCVAT00000022511	-	2721	-	ENSCVAP00000029503	906 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000017583's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000017583's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000017583	blm	95	71.357	ENSAPOG00000017966	blm	77	69.710	Acanthochromis_polyacanthus
ENSCVAG00000017583	blm	94	77.841	ENSACIG00000023762	blm	76	70.940	Amphilophus_citrinellus
ENSCVAG00000017583	blm	99	64.794	ENSAOCG00000003318	blm	77	66.798	Amphiprion_ocellaris
ENSCVAG00000017583	blm	97	67.308	ENSAPEG00000018105	blm	71	70.103	Amphiprion_percula
ENSCVAG00000017583	blm	99	67.925	ENSATEG00000006421	blm	77	73.333	Anabas_testudineus
ENSCVAG00000017583	blm	55	62.162	ENSANAG00000038415	BLM	50	94.737	Aotus_nancymaae
ENSCVAG00000017583	blm	97	76.322	ENSACLG00000020354	blm	76	71.915	Astatotilapia_calliptera
ENSCVAG00000017583	blm	57	76.923	ENSCLAG00000012111	BLM	56	48.101	Chinchilla_lanigera
ENSCVAG00000017583	blm	67	60.894	ENSCPBG00000025000	BLM	66	52.564	Chrysemys_picta_bellii
ENSCVAG00000017583	blm	77	78.241	ENSCGRG00001024897	Blm	60	78.241	Cricetulus_griseus_chok1gshd
ENSCVAG00000017583	blm	89	71.875	ENSCSEG00000013483	blm	75	62.357	Cynoglossus_semilaevis
ENSCVAG00000017583	blm	86	74.733	ENSDARG00000077089	blm	100	45.894	Danio_rerio
ENSCVAG00000017583	blm	50	65.493	ENSDORG00000011033	Blm	51	64.706	Dipodomys_ordii
ENSCVAG00000017583	blm	65	57.233	ENSEASG00005006727	BLM	50	42.918	Equus_asinus_asinus
ENSCVAG00000017583	blm	83	90.909	ENSELUG00000019098	blm	65	71.951	Esox_lucius
ENSCVAG00000017583	blm	97	75.635	ENSFHEG00000002553	blm	77	78.541	Fundulus_heteroclitus
ENSCVAG00000017583	blm	83	72.414	ENSGMOG00000016431	blm	62	72.054	Gadus_morhua
ENSCVAG00000017583	blm	97	76.650	ENSGAFG00000001117	blm	76	77.293	Gambusia_affinis
ENSCVAG00000017583	blm	99	63.396	ENSGACG00000010863	blm	67	75.630	Gasterosteus_aculeatus
ENSCVAG00000017583	blm	95	77.841	ENSHBUG00000015943	blm	77	72.340	Haplochromis_burtoni
ENSCVAG00000017583	blm	67	67.512	ENSHCOG00000011455	blm	66	67.512	Hippocampus_comes
ENSCVAG00000017583	blm	82	63.905	ENSIPUG00000000529	blm	51	73.993	Ictalurus_punctatus
ENSCVAG00000017583	blm	99	70.769	ENSKMAG00000016608	blm	76	76.596	Kryptolebias_marmoratus
ENSCVAG00000017583	blm	55	82.653	ENSLBEG00000018729	blm	57	82.653	Labrus_bergylta
ENSCVAG00000017583	blm	78	82.805	ENSLOCG00000014302	blm	67	57.143	Lepisosteus_oculatus
ENSCVAG00000017583	blm	96	69.802	ENSMAMG00000008726	blm	76	68.776	Mastacembelus_armatus
ENSCVAG00000017583	blm	94	79.167	ENSMZEG00005022323	blm	70	78.409	Maylandia_zebra
ENSCVAG00000017583	blm	99	65.428	ENSMMOG00000006959	blm	76	71.250	Mola_mola
ENSCVAG00000017583	blm	79	79.167	ENSMODG00000019449	BLM	59	79.167	Monodelphis_domestica
ENSCVAG00000017583	blm	99	66.165	ENSMALG00000007323	blm	78	64.885	Monopterus_albus
ENSCVAG00000017583	blm	77	79.167	ENSMUSG00000030528	Blm	61	79.167	Mus_musculus
ENSCVAG00000017583	blm	94	79.762	ENSNBRG00000019702	blm	70	78.977	Neolamprologus_brichardi
ENSCVAG00000017583	blm	96	78.771	ENSONIG00000015193	blm	77	72.083	Oreochromis_niloticus
ENSCVAG00000017583	blm	99	70.817	ENSORLG00000008110	blm	76	77.155	Oryzias_latipes
ENSCVAG00000017583	blm	99	70.428	ENSORLG00020004812	blm	76	76.724	Oryzias_latipes_hni
ENSCVAG00000017583	blm	99	70.428	ENSORLG00015018640	blm	76	76.724	Oryzias_latipes_hsok
ENSCVAG00000017583	blm	97	73.820	ENSOMEG00000023545	blm	76	73.820	Oryzias_melastigma
ENSCVAG00000017583	blm	71	83.871	ENSPKIG00000008954	blm	62	62.162	Paramormyrops_kingsleyae
ENSCVAG00000017583	blm	66	68.681	ENSPMGG00000006629	blm	64	69.231	Periophthalmus_magnuspinnatus
ENSCVAG00000017583	blm	97	75.127	ENSPFOG00000005059	blm	76	78.448	Poecilia_formosa
ENSCVAG00000017583	blm	97	74.619	ENSPLAG00000017344	blm	76	78.017	Poecilia_latipinna
ENSCVAG00000017583	blm	97	75.127	ENSPMEG00000000321	blm	76	78.448	Poecilia_mexicana
ENSCVAG00000017583	blm	97	75.127	ENSPREG00000007715	blm	76	78.017	Poecilia_reticulata
ENSCVAG00000017583	blm	82	77.841	ENSPNYG00000010956	blm	71	71.795	Pundamilia_nyererei
ENSCVAG00000017583	blm	79	77.376	ENSRNOG00000011213	Blm	60	78.241	Rattus_norvegicus
ENSCVAG00000017583	blm	73	49.254	ENSRBIG00000029656	BLM	55	76.923	Rhinopithecus_bieti
ENSCVAG00000017583	blm	97	54.680	ENSSFOG00015015462	blm	62	70.339	Scleropages_formosus
ENSCVAG00000017583	blm	92	78.125	ENSSMAG00000001120	blm	76	70.539	Scophthalmus_maximus
ENSCVAG00000017583	blm	97	69.608	ENSSDUG00000010955	blm	76	71.784	Seriola_dumerili
ENSCVAG00000017583	blm	95	75.419	ENSSLDG00000000634	blm	76	70.539	Seriola_lalandi_dorsalis
ENSCVAG00000017583	blm	98	67.442	ENSSPAG00000013999	blm	76	72.961	Stegastes_partitus
ENSCVAG00000017583	blm	98	67.769	ENSTRUG00000019860	blm	76	67.769	Takifugu_rubripes
ENSCVAG00000017583	blm	97	66.667	ENSTNIG00000019246	blm	71	67.033	Tetraodon_nigroviridis
ENSCVAG00000017583	blm	97	76.768	ENSXCOG00000020227	blm	76	80.786	Xiphophorus_couchianus
ENSCVAG00000017583	blm	97	76.650	ENSXMAG00000002951	blm	76	80.172	Xiphophorus_maculatus