EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000017866 (Gene tree)
Gene ID: 107088621
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 9751 bases
Position: chrKL652724.1:216695-226445
Accession: 107088621
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000029806	RRM_1	PF00076.22	1.8e-27	1	2
ENSCVAP00000029806	RRM_1	PF00076.22	1.8e-27	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000023113	-	1761	XM_015380910	ENSCVAP00000029806	325 (aa)	XP_015236396	UPI0007426A49

Gene Model

Click here to download ENSCVAG00000017866's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000017866's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000017866	trnau1apb	50	31.361	ENSCVAG00000019246	pabpc4	57	31.361
ENSCVAG00000017866	trnau1apb	97	42.453	ENSCVAG00000018069	trnau1apa	76	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000017866	trnau1apb	100	71.779	ENSAPOG00000010086	trnau1apb	95	68.712	Acanthochromis_polyacanthus
ENSCVAG00000017866	trnau1apb	100	76.147	ENSACIG00000001863	trnau1apb	95	74.618	Amphilophus_citrinellus
ENSCVAG00000017866	trnau1apb	100	82.424	ENSAOCG00000011891	trnau1apb	95	81.212	Amphiprion_ocellaris
ENSCVAG00000017866	trnau1apb	100	72.783	ENSAPEG00000008029	trnau1apb	95	80.000	Amphiprion_percula
ENSCVAG00000017866	trnau1apb	100	82.424	ENSATEG00000002196	trnau1apb	95	81.515	Anabas_testudineus
ENSCVAG00000017866	trnau1apb	100	74.775	ENSACLG00000003016	trnau1apb	95	73.273	Astatotilapia_calliptera
ENSCVAG00000017866	trnau1apb	99	58.769	ENSAMXG00000001805	trnau1apb	94	58.333	Astyanax_mexicanus
ENSCVAG00000017866	trnau1apb	99	76.292	ENSCSEG00000018215	trnau1apb	96	76.292	Cynoglossus_semilaevis
ENSCVAG00000017866	trnau1apb	100	55.015	ENSDARG00000056475	trnau1apb	94	58.055	Danio_rerio
ENSCVAG00000017866	trnau1apb	65	71.362	ENSELUG00000016683	trnau1apb	94	58.258	Esox_lucius
ENSCVAG00000017866	trnau1apb	100	89.908	ENSFHEG00000001267	trnau1apb	100	89.908	Fundulus_heteroclitus
ENSCVAG00000017866	trnau1apb	100	65.982	ENSGMOG00000001160	trnau1apb	95	69.817	Gadus_morhua
ENSCVAG00000017866	trnau1apb	100	67.576	ENSGAFG00000006770	trnau1apb	95	69.091	Gambusia_affinis
ENSCVAG00000017866	trnau1apb	100	73.636	ENSGACG00000014944	trnau1apb	95	73.636	Gasterosteus_aculeatus
ENSCVAG00000017866	trnau1apb	100	81.212	ENSHBUG00000018944	trnau1apb	95	80.303	Haplochromis_burtoni
ENSCVAG00000017866	trnau1apb	66	78.972	ENSHCOG00000011350	trnau1apb	66	79.710	Hippocampus_comes
ENSCVAG00000017866	trnau1apb	99	57.622	ENSIPUG00000008843	tsp1l	95	59.878	Ictalurus_punctatus
ENSCVAG00000017866	trnau1apb	62	89.655	ENSKMAG00000010082	trnau1apb	95	82.979	Kryptolebias_marmoratus
ENSCVAG00000017866	trnau1apb	100	77.508	ENSLBEG00000020480	trnau1apb	95	77.204	Labrus_bergylta
ENSCVAG00000017866	trnau1apb	100	49.394	ENSLOCG00000013175	trnau1apb	94	46.951	Lepisosteus_oculatus
ENSCVAG00000017866	trnau1apb	100	79.697	ENSMAMG00000012192	trnau1apb	95	80.909	Mastacembelus_armatus
ENSCVAG00000017866	trnau1apb	100	81.212	ENSMZEG00005014852	trnau1apb	95	80.303	Maylandia_zebra
ENSCVAG00000017866	trnau1apb	97	71.171	ENSMMOG00000021521	trnau1apb	95	66.066	Mola_mola
ENSCVAG00000017866	trnau1apb	100	69.632	ENSMALG00000003772	trnau1apb	95	66.163	Monopterus_albus
ENSCVAG00000017866	trnau1apb	97	74.613	ENSNBRG00000000751	trnau1apb	94	73.065	Neolamprologus_brichardi
ENSCVAG00000017866	trnau1apb	100	71.560	ENSONIG00000016639	trnau1apb	96	70.031	Oreochromis_niloticus
ENSCVAG00000017866	trnau1apb	100	79.697	ENSORLG00000013265	trnau1apb	95	77.576	Oryzias_latipes
ENSCVAG00000017866	trnau1apb	100	78.485	ENSORLG00020004464	trnau1apb	100	80.606	Oryzias_latipes_hni
ENSCVAG00000017866	trnau1apb	100	78.485	ENSORLG00015021098	trnau1apb	95	80.606	Oryzias_latipes_hsok
ENSCVAG00000017866	trnau1apb	100	76.667	ENSOMEG00000016531	trnau1apb	95	80.909	Oryzias_melastigma
ENSCVAG00000017866	trnau1apb	50	78.313	ENSPKIG00000007995	trnau1apb	95	55.455	Paramormyrops_kingsleyae
ENSCVAG00000017866	trnau1apb	75	39.592	ENSPSIG00000004189	-	78	35.102	Pelodiscus_sinensis
ENSCVAG00000017866	trnau1apb	77	75.785	ENSPMGG00000018509	trnau1apb	91	77.130	Periophthalmus_magnuspinnatus
ENSCVAG00000017866	trnau1apb	100	88.379	ENSPFOG00000003938	trnau1apb	95	88.379	Poecilia_formosa
ENSCVAG00000017866	trnau1apb	100	88.379	ENSPLAG00000015480	trnau1apb	95	88.379	Poecilia_latipinna
ENSCVAG00000017866	trnau1apb	100	88.379	ENSPMEG00000012743	trnau1apb	95	88.379	Poecilia_mexicana
ENSCVAG00000017866	trnau1apb	100	87.768	ENSPREG00000015035	trnau1apb	95	87.768	Poecilia_reticulata
ENSCVAG00000017866	trnau1apb	100	74.775	ENSPNYG00000012127	trnau1apb	95	73.273	Pundamilia_nyererei
ENSCVAG00000017866	trnau1apb	99	60.182	ENSPNAG00000019138	trnau1apb	93	59.878	Pygocentrus_nattereri
ENSCVAG00000017866	trnau1apb	99	56.176	ENSSFOG00015014158	trnau1apb	94	59.118	Scleropages_formosus
ENSCVAG00000017866	trnau1apb	99	76.829	ENSSMAG00000001745	trnau1apb	95	72.256	Scophthalmus_maximus
ENSCVAG00000017866	trnau1apb	99	81.155	ENSSDUG00000011109	trnau1apb	95	80.547	Seriola_dumerili
ENSCVAG00000017866	trnau1apb	99	81.155	ENSSLDG00000012947	trnau1apb	95	80.547	Seriola_lalandi_dorsalis
ENSCVAG00000017866	trnau1apb	74	36.782	ENSSPUG00000016701	-	82	34.677	Sphenodon_punctatus
ENSCVAG00000017866	trnau1apb	100	82.727	ENSSPAG00000006917	trnau1apb	95	81.818	Stegastes_partitus
ENSCVAG00000017866	trnau1apb	100	70.746	ENSTRUG00000008608	trnau1apb	95	69.605	Takifugu_rubripes
ENSCVAG00000017866	trnau1apb	100	66.361	ENSTNIG00000000916	trnau1apb	96	65.951	Tetraodon_nigroviridis
ENSCVAG00000017866	trnau1apb	99	77.950	ENSXCOG00000007974	trnau1apb	94	77.950	Xiphophorus_couchianus
ENSCVAG00000017866	trnau1apb	100	89.297	ENSXMAG00000029918	trnau1apb	95	89.297	Xiphophorus_maculatus