EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000018069 (Gene tree)
Gene ID: 107087965
Gene Symbol: trnau1apa
Alias: trnau1ap|zgc:110606
Full Name: tRNA selenocysteine 1 associated protein 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 17876 bases
Position: chrKL652701.1:1087714-1105589
Accession: 107087965
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000015239	RRM_1	PF00076.22	3e-27	1	2
ENSCVAP00000015239	RRM_1	PF00076.22	3e-27	2	2
ENSCVAP00000015251	RRM_1	PF00076.22	1.8e-24	1	2
ENSCVAP00000015251	RRM_1	PF00076.22	1.8e-24	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000023304	-	858	-	ENSCVAP00000015251	285 (aa)	-	-
ENSCVAT00000031441	-	1332	XM_015379839	ENSCVAP00000015239	309 (aa)	XP_015235325	UPI0007427AFD

Gene Model

Click here to download ENSCVAG00000018069's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000018069's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000018069	trnau1apa	76	50.000	ENSCVAG00000017866	trnau1apb	97	42.453

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000018069	trnau1apa	94	59.341	ENSG00000180098	TRNAU1AP	97	57.823	Homo_sapiens
ENSCVAG00000018069	trnau1apa	99	83.062	ENSAPOG00000007148	TRNAU1AP	99	82.026	Acanthochromis_polyacanthus
ENSCVAG00000018069	trnau1apa	94	59.707	ENSAMEG00000011367	TRNAU1AP	97	57.679	Ailuropoda_melanoleuca
ENSCVAG00000018069	trnau1apa	91	92.135	ENSACIG00000004161	trnau1apa	93	92.135	Amphilophus_citrinellus
ENSCVAG00000018069	trnau1apa	99	83.660	ENSAOCG00000008056	trnau1apa	99	81.699	Amphiprion_ocellaris
ENSCVAG00000018069	trnau1apa	99	83.660	ENSAPEG00000008868	trnau1apa	99	81.699	Amphiprion_percula
ENSCVAG00000018069	trnau1apa	99	79.618	ENSATEG00000012140	trnau1apa	99	78.344	Anabas_testudineus
ENSCVAG00000018069	trnau1apa	93	59.041	ENSAPLG00000002606	TRNAU1AP	99	57.343	Anas_platyrhynchos
ENSCVAG00000018069	trnau1apa	94	48.905	ENSACAG00000003995	-	95	48.123	Anolis_carolinensis
ENSCVAG00000018069	trnau1apa	73	38.710	ENSACAG00000004205	-	84	40.789	Anolis_carolinensis
ENSCVAG00000018069	trnau1apa	94	59.341	ENSANAG00000018976	TRNAU1AP	97	57.823	Aotus_nancymaae
ENSCVAG00000018069	trnau1apa	99	80.719	ENSACLG00000018515	trnau1apa	99	79.739	Astatotilapia_calliptera
ENSCVAG00000018069	trnau1apa	99	53.968	ENSAMXG00000013750	trnau1apa	97	51.613	Astyanax_mexicanus
ENSCVAG00000018069	trnau1apa	93	71.591	ENSAMXG00000029240	-	97	71.591	Astyanax_mexicanus
ENSCVAG00000018069	trnau1apa	94	58.974	ENSBTAG00000010393	TRNAU1AP	97	57.483	Bos_taurus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSCJAG00000009717	TRNAU1AP	97	57.823	Callithrix_jacchus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSCAFG00000011735	TRNAU1AP	97	57.823	Canis_familiaris
ENSCVAG00000018069	trnau1apa	94	59.341	ENSCAFG00020023584	TRNAU1AP	97	57.823	Canis_lupus_dingo
ENSCVAG00000018069	trnau1apa	94	58.974	ENSCHIG00000023215	TRNAU1AP	97	57.483	Capra_hircus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSTSYG00000003506	TRNAU1AP	97	57.823	Carlito_syrichta
ENSCVAG00000018069	trnau1apa	94	59.341	ENSCPOG00000001925	TRNAU1AP	97	57.823	Cavia_porcellus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSCCAG00000037506	TRNAU1AP	97	57.823	Cebus_capucinus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSCATG00000044617	TRNAU1AP	97	57.823	Cercocebus_atys
ENSCVAG00000018069	trnau1apa	94	59.341	ENSCLAG00000008223	TRNAU1AP	97	57.823	Chinchilla_lanigera
ENSCVAG00000018069	trnau1apa	94	59.341	ENSCSAG00000001014	TRNAU1AP	97	57.823	Chlorocebus_sabaeus
ENSCVAG00000018069	trnau1apa	94	58.242	ENSCPBG00000000121	TRNAU1AP	96	58.974	Chrysemys_picta_bellii
ENSCVAG00000018069	trnau1apa	56	50.000	ENSCSAVG00000011781	-	89	48.824	Ciona_savignyi
ENSCVAG00000018069	trnau1apa	94	50.916	ENSCANG00000041949	TRNAU1AP	94	56.983	Colobus_angolensis_palliatus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSCGRG00001004713	Trnau1ap	97	57.823	Cricetulus_griseus_chok1gshd
ENSCVAG00000018069	trnau1apa	94	59.341	ENSCGRG00000014532	Trnau1ap	97	57.823	Cricetulus_griseus_crigri
ENSCVAG00000018069	trnau1apa	99	87.805	ENSCSEG00000006663	trnau1apa	99	73.163	Cynoglossus_semilaevis
ENSCVAG00000018069	trnau1apa	99	48.710	ENSDARG00000101323	trnau1apa	95	47.727	Danio_rerio
ENSCVAG00000018069	trnau1apa	94	59.341	ENSDNOG00000033009	TRNAU1AP	97	57.823	Dasypus_novemcinctus
ENSCVAG00000018069	trnau1apa	56	60.625	ENSDNOG00000047959	-	89	58.721	Dasypus_novemcinctus
ENSCVAG00000018069	trnau1apa	94	58.209	ENSDORG00000006349	Trnau1ap	98	61.570	Dipodomys_ordii
ENSCVAG00000018069	trnau1apa	92	35.474	FBgn0031607	CG15440	96	34.969	Drosophila_melanogaster
ENSCVAG00000018069	trnau1apa	82	56.667	ENSETEG00000012594	TRNAU1AP	95	58.025	Echinops_telfairi
ENSCVAG00000018069	trnau1apa	61	47.727	ENSEBUG00000006349	-	56	47.727	Eptatretus_burgeri
ENSCVAG00000018069	trnau1apa	94	59.341	ENSEASG00005010062	TRNAU1AP	93	65.333	Equus_asinus_asinus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSECAG00000012980	TRNAU1AP	93	65.333	Equus_caballus
ENSCVAG00000018069	trnau1apa	91	81.579	ENSELUG00000022790	-	93	81.579	Esox_lucius
ENSCVAG00000018069	trnau1apa	99	67.314	ENSELUG00000017686	trnau1apa	100	68.601	Esox_lucius
ENSCVAG00000018069	trnau1apa	94	59.341	ENSFCAG00000013401	TRNAU1AP	97	57.823	Felis_catus
ENSCVAG00000018069	trnau1apa	94	58.608	ENSFALG00000001371	TRNAU1AP	96	59.707	Ficedula_albicollis
ENSCVAG00000018069	trnau1apa	94	59.341	ENSFDAG00000018599	TRNAU1AP	97	57.823	Fukomys_damarensis
ENSCVAG00000018069	trnau1apa	78	90.612	ENSFHEG00000018232	trnau1apa	82	91.026	Fundulus_heteroclitus
ENSCVAG00000018069	trnau1apa	99	63.023	ENSGMOG00000016508	trnau1apa	99	63.987	Gadus_morhua
ENSCVAG00000018069	trnau1apa	69	36.818	ENSGALG00000012721	C2H6orf52	90	35.496	Gallus_gallus
ENSCVAG00000018069	trnau1apa	94	58.242	ENSGALG00000001310	-	97	56.997	Gallus_gallus
ENSCVAG00000018069	trnau1apa	79	93.469	ENSGAFG00000004928	trnau1apa	92	93.416	Gambusia_affinis
ENSCVAG00000018069	trnau1apa	99	80.392	ENSGACG00000001443	trnau1apa	99	78.431	Gasterosteus_aculeatus
ENSCVAG00000018069	trnau1apa	94	58.242	ENSGAGG00000004940	TRNAU1AP	96	59.489	Gopherus_agassizii
ENSCVAG00000018069	trnau1apa	94	59.341	ENSGGOG00000003511	TRNAU1AP	97	57.823	Gorilla_gorilla
ENSCVAG00000018069	trnau1apa	99	93.333	ENSHBUG00000002510	trnau1apa	99	93.333	Haplochromis_burtoni
ENSCVAG00000018069	trnau1apa	94	59.341	ENSHGLG00000010380	TRNAU1AP	97	57.823	Heterocephalus_glaber_female
ENSCVAG00000018069	trnau1apa	92	59.108	ENSHGLG00100012699	TRNAU1AP	92	60.294	Heterocephalus_glaber_male
ENSCVAG00000018069	trnau1apa	99	72.524	ENSHCOG00000014770	trnau1apa	99	72.204	Hippocampus_comes
ENSCVAG00000018069	trnau1apa	94	59.341	ENSSTOG00000000079	TRNAU1AP	97	57.823	Ictidomys_tridecemlineatus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSJJAG00000010128	Trnau1ap	97	57.823	Jaculus_jaculus
ENSCVAG00000018069	trnau1apa	99	85.948	ENSKMAG00000001230	trnau1apa	99	85.948	Kryptolebias_marmoratus
ENSCVAG00000018069	trnau1apa	99	75.079	ENSLBEG00000011683	trnau1apa	99	73.817	Labrus_bergylta
ENSCVAG00000018069	trnau1apa	94	52.381	ENSLACG00000005541	TRNAU1AP	96	52.218	Latimeria_chalumnae
ENSCVAG00000018069	trnau1apa	99	57.093	ENSLOCG00000004041	trnau1apa	99	57.237	Lepisosteus_oculatus
ENSCVAG00000018069	trnau1apa	94	59.707	ENSLAFG00000007628	TRNAU1AP	97	58.163	Loxodonta_africana
ENSCVAG00000018069	trnau1apa	94	59.341	ENSMFAG00000043751	TRNAU1AP	97	57.823	Macaca_fascicularis
ENSCVAG00000018069	trnau1apa	94	59.341	ENSMMUG00000006561	TRNAU1AP	97	57.823	Macaca_mulatta
ENSCVAG00000018069	trnau1apa	94	59.341	ENSMNEG00000044201	TRNAU1AP	97	57.823	Macaca_nemestrina
ENSCVAG00000018069	trnau1apa	94	59.341	ENSMLEG00000015649	TRNAU1AP	97	57.823	Mandrillus_leucophaeus
ENSCVAG00000018069	trnau1apa	99	80.707	ENSMAMG00000001247	trnau1apa	99	77.814	Mastacembelus_armatus
ENSCVAG00000018069	trnau1apa	99	80.719	ENSMZEG00005017722	trnau1apa	99	79.739	Maylandia_zebra
ENSCVAG00000018069	trnau1apa	94	58.242	ENSMGAG00000002105	TRNAU1AP	95	59.707	Meleagris_gallopavo
ENSCVAG00000018069	trnau1apa	94	59.341	ENSMICG00000008386	TRNAU1AP	97	57.823	Microcebus_murinus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSMOCG00000011189	Trnau1ap	97	57.823	Microtus_ochrogaster
ENSCVAG00000018069	trnau1apa	99	68.729	ENSMMOG00000012107	trnau1apa	99	70.323	Mola_mola
ENSCVAG00000018069	trnau1apa	94	58.608	ENSMODG00000010927	TRNAU1AP	97	56.803	Monodelphis_domestica
ENSCVAG00000018069	trnau1apa	99	82.201	ENSMALG00000016778	trnau1apa	99	80.906	Monopterus_albus
ENSCVAG00000018069	trnau1apa	94	59.341	MGP_CAROLIEiJ_G0026563	Trnau1ap	94	61.728	Mus_caroli
ENSCVAG00000018069	trnau1apa	94	59.341	ENSMUSG00000028898	Trnau1ap	94	61.728	Mus_musculus
ENSCVAG00000018069	trnau1apa	94	59.341	MGP_PahariEiJ_G0028896	Trnau1ap	84	72.881	Mus_pahari
ENSCVAG00000018069	trnau1apa	94	59.341	MGP_SPRETEiJ_G0027544	Trnau1ap	94	61.728	Mus_spretus
ENSCVAG00000018069	trnau1apa	94	59.707	ENSMPUG00000015511	TRNAU1AP	97	58.163	Mustela_putorius_furo
ENSCVAG00000018069	trnau1apa	94	59.341	ENSMLUG00000012586	TRNAU1AP	97	57.823	Myotis_lucifugus
ENSCVAG00000018069	trnau1apa	94	58.242	ENSNGAG00000015881	Trnau1ap	97	57.338	Nannospalax_galili
ENSCVAG00000018069	trnau1apa	99	69.388	ENSNBRG00000001758	trnau1apa	99	66.129	Neolamprologus_brichardi
ENSCVAG00000018069	trnau1apa	94	59.341	ENSNLEG00000009822	TRNAU1AP	97	57.823	Nomascus_leucogenys
ENSCVAG00000018069	trnau1apa	94	58.394	ENSMEUG00000006117	TRNAU1AP	95	59.206	Notamacropus_eugenii
ENSCVAG00000018069	trnau1apa	53	60.674	ENSOPRG00000007084	-	61	60.674	Ochotona_princeps
ENSCVAG00000018069	trnau1apa	94	59.341	ENSODEG00000002970	TRNAU1AP	97	57.823	Octodon_degus
ENSCVAG00000018069	trnau1apa	80	85.425	ENSONIG00000004715	trnau1apa	92	85.532	Oreochromis_niloticus
ENSCVAG00000018069	trnau1apa	94	44.161	ENSOANG00000005325	-	95	44.369	Ornithorhynchus_anatinus
ENSCVAG00000018069	trnau1apa	94	47.955	ENSOCUG00000002353	-	96	46.575	Oryctolagus_cuniculus
ENSCVAG00000018069	trnau1apa	94	57.875	ENSOCUG00000011704	-	97	56.463	Oryctolagus_cuniculus
ENSCVAG00000018069	trnau1apa	88	47.619	ENSOCUG00000006834	-	93	47.619	Oryctolagus_cuniculus
ENSCVAG00000018069	trnau1apa	99	84.314	ENSORLG00000010428	trnau1apa	99	82.026	Oryzias_latipes
ENSCVAG00000018069	trnau1apa	99	84.314	ENSORLG00020000926	trnau1ap	99	82.026	Oryzias_latipes_hni
ENSCVAG00000018069	trnau1apa	99	84.314	ENSORLG00015009858	trnau1ap	99	82.026	Oryzias_latipes_hsok
ENSCVAG00000018069	trnau1apa	99	83.987	ENSOMEG00000007873	trnau1apa	99	82.026	Oryzias_melastigma
ENSCVAG00000018069	trnau1apa	94	59.341	ENSOGAG00000002274	TRNAU1AP	97	57.823	Otolemur_garnettii
ENSCVAG00000018069	trnau1apa	94	58.974	ENSOARG00000002843	TRNAU1AP	97	57.483	Ovis_aries
ENSCVAG00000018069	trnau1apa	94	59.341	ENSPPAG00000033927	TRNAU1AP	97	58.305	Pan_paniscus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSPPRG00000004416	TRNAU1AP	97	57.823	Panthera_pardus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSPTIG00000016677	TRNAU1AP	97	57.823	Panthera_tigris_altaica
ENSCVAG00000018069	trnau1apa	89	51.894	ENSPTRG00000000434	-	91	52.652	Pan_troglodytes
ENSCVAG00000018069	trnau1apa	94	59.341	ENSPANG00000016019	TRNAU1AP	97	57.823	Papio_anubis
ENSCVAG00000018069	trnau1apa	91	78.947	ENSPKIG00000022205	-	94	78.409	Paramormyrops_kingsleyae
ENSCVAG00000018069	trnau1apa	96	57.746	ENSPKIG00000015511	trnau1apa	94	57.047	Paramormyrops_kingsleyae
ENSCVAG00000018069	trnau1apa	94	58.242	ENSPSIG00000006864	TRNAU1AP	96	59.489	Pelodiscus_sinensis
ENSCVAG00000018069	trnau1apa	99	69.123	ENSPMGG00000023893	trnau1apa	99	66.343	Periophthalmus_magnuspinnatus
ENSCVAG00000018069	trnau1apa	94	58.974	ENSPEMG00000007877	Trnau1ap	97	57.483	Peromyscus_maniculatus_bairdii
ENSCVAG00000018069	trnau1apa	77	53.846	ENSPMAG00000005934	trnau1apa	96	53.275	Petromyzon_marinus
ENSCVAG00000018069	trnau1apa	57	54.217	ENSPMAG00000000592	trnau1apa	95	54.335	Petromyzon_marinus
ENSCVAG00000018069	trnau1apa	99	87.622	ENSPFOG00000008100	trnau1apa	99	87.622	Poecilia_formosa
ENSCVAG00000018069	trnau1apa	95	87.797	ENSPLAG00000010236	trnau1apa	99	87.797	Poecilia_latipinna
ENSCVAG00000018069	trnau1apa	99	85.621	ENSPMEG00000016387	trnau1apa	97	85.621	Poecilia_mexicana
ENSCVAG00000018069	trnau1apa	88	93.671	ENSPREG00000019821	trnau1apa	92	93.671	Poecilia_reticulata
ENSCVAG00000018069	trnau1apa	87	51.550	ENSPPYG00000001639	-	96	52.874	Pongo_abelii
ENSCVAG00000018069	trnau1apa	94	59.341	ENSPCOG00000027712	-	97	57.823	Propithecus_coquereli
ENSCVAG00000018069	trnau1apa	93	47.059	ENSPCOG00000023470	-	96	45.993	Propithecus_coquereli
ENSCVAG00000018069	trnau1apa	94	59.341	ENSPVAG00000017214	TRNAU1AP	97	57.823	Pteropus_vampyrus
ENSCVAG00000018069	trnau1apa	99	81.481	ENSPNYG00000010130	trnau1apa	99	81.481	Pundamilia_nyererei
ENSCVAG00000018069	trnau1apa	99	51.133	ENSPNAG00000024905	trnau1apa	97	50.485	Pygocentrus_nattereri
ENSCVAG00000018069	trnau1apa	89	58.268	ENSRNOG00000055344	Trnau1ap	82	59.533	Rattus_norvegicus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSRBIG00000029083	TRNAU1AP	97	57.823	Rhinopithecus_bieti
ENSCVAG00000018069	trnau1apa	94	59.341	ENSRROG00000029128	TRNAU1AP	97	57.823	Rhinopithecus_roxellana
ENSCVAG00000018069	trnau1apa	94	59.341	ENSSBOG00000021299	TRNAU1AP	97	57.823	Saimiri_boliviensis_boliviensis
ENSCVAG00000018069	trnau1apa	94	58.242	ENSSHAG00000008108	TRNAU1AP	97	56.463	Sarcophilus_harrisii
ENSCVAG00000018069	trnau1apa	99	77.994	ENSSMAG00000020851	trnau1apa	99	75.728	Scophthalmus_maximus
ENSCVAG00000018069	trnau1apa	99	79.677	ENSSDUG00000011734	trnau1apa	99	79.032	Seriola_dumerili
ENSCVAG00000018069	trnau1apa	99	65.614	ENSSLDG00000012101	trnau1apa	95	65.614	Seriola_lalandi_dorsalis
ENSCVAG00000018069	trnau1apa	94	59.341	ENSSARG00000007536	TRNAU1AP	95	60.507	Sorex_araneus
ENSCVAG00000018069	trnau1apa	60	51.136	ENSSPUG00000010415	-	95	51.136	Sphenodon_punctatus
ENSCVAG00000018069	trnau1apa	94	54.779	ENSSPUG00000010400	-	97	55.290	Sphenodon_punctatus
ENSCVAG00000018069	trnau1apa	99	83.007	ENSSPAG00000005029	trnau1apa	99	82.026	Stegastes_partitus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSSSCG00000030284	TRNAU1AP	97	57.823	Sus_scrofa
ENSCVAG00000018069	trnau1apa	94	58.974	ENSTGUG00000000735	-	95	60.073	Taeniopygia_guttata
ENSCVAG00000018069	trnau1apa	69	39.367	ENSTGUG00000005908	-	99	41.315	Taeniopygia_guttata
ENSCVAG00000018069	trnau1apa	99	78.176	ENSTRUG00000003352	trnau1apa	99	76.221	Takifugu_rubripes
ENSCVAG00000018069	trnau1apa	99	76.699	ENSTNIG00000006129	trnau1apa	99	75.081	Tetraodon_nigroviridis
ENSCVAG00000018069	trnau1apa	82	53.527	ENSTBEG00000008049	-	95	53.909	Tupaia_belangeri
ENSCVAG00000018069	trnau1apa	94	59.341	ENSTTRG00000001854	TRNAU1AP	97	57.823	Tursiops_truncatus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSUAMG00000008789	TRNAU1AP	96	60.507	Ursus_americanus
ENSCVAG00000018069	trnau1apa	94	59.341	ENSUMAG00000011068	TRNAU1AP	97	57.823	Ursus_maritimus
ENSCVAG00000018069	trnau1apa	94	49.835	ENSVPAG00000006778	TRNAU1AP	97	50.329	Vicugna_pacos
ENSCVAG00000018069	trnau1apa	94	59.341	ENSVVUG00000012518	TRNAU1AP	86	60.507	Vulpes_vulpes
ENSCVAG00000018069	trnau1apa	99	87.948	ENSXMAG00000017361	trnau1apa	99	87.948	Xiphophorus_maculatus