EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000018780 (Gene tree)
Gene ID: 107091884
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 12001 bases
Position: chrKL652856.1:797196-809196
Accession: 107091884
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000030327	ResIII	PF04851.15	1.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000024128	SMARCAL1-201	3078	XM_015386080	ENSCVAP00000030327	884 (aa)	XP_015241566	UPI0007427C74

Gene Model

Click here to download ENSCVAG00000018780's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000018780's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000018780	SMARCAL1	82	58.082	ENSG00000138375	SMARCAL1	99	65.217	Homo_sapiens
ENSCVAG00000018780	SMARCAL1	99	74.480	ENSAPOG00000020156	SMARCAL1	99	74.589	Acanthochromis_polyacanthus
ENSCVAG00000018780	SMARCAL1	93	75.976	ENSACIG00000001500	smarcal1	97	75.976	Amphilophus_citrinellus
ENSCVAG00000018780	SMARCAL1	97	74.916	ENSAOCG00000014266	SMARCAL1	99	75.028	Amphiprion_ocellaris
ENSCVAG00000018780	SMARCAL1	99	74.480	ENSAPEG00000015861	SMARCAL1	99	83.858	Amphiprion_percula
ENSCVAG00000018780	SMARCAL1	100	72.384	ENSATEG00000020624	SMARCAL1	100	72.384	Anabas_testudineus
ENSCVAG00000018780	SMARCAL1	77	62.990	ENSAPLG00000009864	SMARCAL1	75	61.401	Anas_platyrhynchos
ENSCVAG00000018780	SMARCAL1	100	52.222	ENSACAG00000004612	SMARCAL1	99	52.174	Anolis_carolinensis
ENSCVAG00000018780	SMARCAL1	97	75.000	ENSACLG00000015990	SMARCAL1	98	75.000	Astatotilapia_calliptera
ENSCVAG00000018780	SMARCAL1	100	64.238	ENSAMXG00000003350	smarcal1	99	64.238	Astyanax_mexicanus
ENSCVAG00000018780	SMARCAL1	81	62.932	ENSCPBG00000013599	SMARCAL1	73	62.932	Chrysemys_picta_bellii
ENSCVAG00000018780	SMARCAL1	77	48.746	ENSCING00000009308	-	100	48.762	Ciona_intestinalis
ENSCVAG00000018780	SMARCAL1	98	68.973	ENSCSEG00000010785	SMARCAL1	100	68.521	Cynoglossus_semilaevis
ENSCVAG00000018780	SMARCAL1	78	48.133	ENSEBUG00000011906	SMARCAL1	99	48.000	Eptatretus_burgeri
ENSCVAG00000018780	SMARCAL1	82	70.516	ENSELUG00000010440	-	95	70.053	Esox_lucius
ENSCVAG00000018780	SMARCAL1	77	64.680	ENSFALG00000003981	SMARCAL1	71	64.680	Ficedula_albicollis
ENSCVAG00000018780	SMARCAL1	100	82.235	ENSFHEG00000008380	SMARCAL1	100	82.235	Fundulus_heteroclitus
ENSCVAG00000018780	SMARCAL1	58	73.050	ENSGMOG00000010034	smarcal1	90	73.050	Gadus_morhua
ENSCVAG00000018780	SMARCAL1	96	52.559	ENSGALG00000011475	RPL37A	96	52.239	Gallus_gallus
ENSCVAG00000018780	SMARCAL1	89	81.121	ENSGACG00000006073	SMARCAL1	100	82.682	Gasterosteus_aculeatus
ENSCVAG00000018780	SMARCAL1	93	53.980	ENSGAGG00000015660	SMARCAL1	99	53.980	Gopherus_agassizii
ENSCVAG00000018780	SMARCAL1	97	74.774	ENSHBUG00000002973	smarcal1	98	74.774	Haplochromis_burtoni
ENSCVAG00000018780	SMARCAL1	95	72.183	ENSHCOG00000017921	smarcal1	98	72.183	Hippocampus_comes
ENSCVAG00000018780	SMARCAL1	96	74.341	ENSKMAG00000012023	SMARCAL1	99	74.341	Kryptolebias_marmoratus
ENSCVAG00000018780	SMARCAL1	81	79.150	ENSLBEG00000022915	smarcal1	95	79.150	Labrus_bergylta
ENSCVAG00000018780	SMARCAL1	90	71.395	ENSLBEG00000003493	smarcal1	100	71.395	Labrus_bergylta
ENSCVAG00000018780	SMARCAL1	100	58.759	ENSLACG00000010974	SMARCAL1	99	55.168	Latimeria_chalumnae
ENSCVAG00000018780	SMARCAL1	93	62.810	ENSLOCG00000009637	smarcal1	99	62.871	Lepisosteus_oculatus
ENSCVAG00000018780	SMARCAL1	97	73.462	ENSMAMG00000000828	SMARCAL1	99	73.462	Mastacembelus_armatus
ENSCVAG00000018780	SMARCAL1	97	74.887	ENSMZEG00005007660	SMARCAL1	98	74.887	Maylandia_zebra
ENSCVAG00000018780	SMARCAL1	96	54.365	ENSMGAG00000011658	SMARCAL1	96	54.144	Meleagris_gallopavo
ENSCVAG00000018780	SMARCAL1	93	69.166	ENSMMOG00000003842	smarcal1	94	69.166	Mola_mola
ENSCVAG00000018780	SMARCAL1	100	52.169	ENSMODG00000015544	SMARCAL1	99	52.169	Monodelphis_domestica
ENSCVAG00000018780	SMARCAL1	93	74.634	ENSNBRG00000016273	smarcal1	97	74.634	Neolamprologus_brichardi
ENSCVAG00000018780	SMARCAL1	91	53.986	ENSMEUG00000004395	SMARCAL1	99	53.986	Notamacropus_eugenii
ENSCVAG00000018780	SMARCAL1	97	75.141	ENSONIG00000009036	smarcal1	100	83.187	Oreochromis_niloticus
ENSCVAG00000018780	SMARCAL1	100	71.350	ENSORLG00000016455	SMARCAL1	100	71.350	Oryzias_latipes
ENSCVAG00000018780	SMARCAL1	100	71.207	ENSORLG00020001610	SMARCAL1	100	71.207	Oryzias_latipes_hni
ENSCVAG00000018780	SMARCAL1	100	71.319	ENSORLG00015001865	SMARCAL1	100	71.319	Oryzias_latipes_hsok
ENSCVAG00000018780	SMARCAL1	100	72.352	ENSOMEG00000001845	smarcal1	100	72.352	Oryzias_melastigma
ENSCVAG00000018780	SMARCAL1	100	68.066	ENSPMGG00000019092	SMARCAL1	100	68.287	Periophthalmus_magnuspinnatus
ENSCVAG00000018780	SMARCAL1	100	51.177	ENSPCIG00000022514	SMARCAL1	99	52.318	Phascolarctos_cinereus
ENSCVAG00000018780	SMARCAL1	100	82.254	ENSPFOG00000000560	SMARCAL1	100	82.254	Poecilia_formosa
ENSCVAG00000018780	SMARCAL1	100	81.920	ENSPMEG00000018146	SMARCAL1	100	81.920	Poecilia_mexicana
ENSCVAG00000018780	SMARCAL1	67	82.869	ENSPREG00000009591	SMARCAL1	97	89.815	Poecilia_reticulata
ENSCVAG00000018780	SMARCAL1	100	64.778	ENSPNAG00000014900	smarcal1	95	65.039	Pygocentrus_nattereri
ENSCVAG00000018780	SMARCAL1	99	49.946	ENSSHAG00000013538	SMARCAL1	100	49.784	Sarcophilus_harrisii
ENSCVAG00000018780	SMARCAL1	100	70.892	ENSSMAG00000010427	SMARCAL1	100	70.892	Scophthalmus_maximus
ENSCVAG00000018780	SMARCAL1	98	74.140	ENSSDUG00000017470	SMARCAL1	96	74.140	Seriola_dumerili
ENSCVAG00000018780	SMARCAL1	100	72.777	ENSSLDG00000007224	SMARCAL1	100	72.777	Seriola_lalandi_dorsalis
ENSCVAG00000018780	SMARCAL1	87	65.411	ENSSPUG00000015369	SMARCAL1	72	65.411	Sphenodon_punctatus
ENSCVAG00000018780	SMARCAL1	93	74.818	ENSSPAG00000003742	smarcal1	99	75.754	Stegastes_partitus
ENSCVAG00000018780	SMARCAL1	79	56.094	ENSSSCG00000035501	SMARCAL1	80	55.956	Sus_scrofa
ENSCVAG00000018780	SMARCAL1	79	62.445	ENSTGUG00000005079	SMARCAL1	99	62.445	Taeniopygia_guttata
ENSCVAG00000018780	SMARCAL1	96	62.057	ENSTRUG00000010701	SMARCAL1	98	63.867	Takifugu_rubripes
ENSCVAG00000018780	SMARCAL1	99	43.156	ENSTTRG00000009001	SMARCAL1	99	42.992	Tursiops_truncatus
ENSCVAG00000018780	SMARCAL1	96	55.531	ENSXETG00000000465	smarcal1	97	55.483	Xenopus_tropicalis