EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000018999 (Gene tree)
Gene ID: 107098172
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 33382 bases
Position: chrKL653252.1:42227-75608
Accession: 107098172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000015952	XRN_N	PF03159.18	4.1e-102	1	1
ENSCVAP00000015966	XRN_N	PF03159.18	1.3e-101	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000024185	-	2652	XM_015395680	ENSCVAP00000015966	883 (aa)	XP_015251166	-
ENSCVAT00000024171	-	1611	-	ENSCVAP00000015952	536 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000018999's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000018999's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000018999	xrn2	98	76.762	ENSG00000088930	XRN2	89	71.494	Homo_sapiens
ENSCVAG00000018999	xrn2	98	92.925	ENSAPOG00000009818	xrn2	89	85.291	Acanthochromis_polyacanthus
ENSCVAG00000018999	xrn2	98	76.952	ENSAMEG00000012581	XRN2	89	71.527	Ailuropoda_melanoleuca
ENSCVAG00000018999	xrn2	98	89.504	ENSACIG00000015047	xrn2	95	89.313	Amphilophus_citrinellus
ENSCVAG00000018999	xrn2	98	93.881	ENSAOCG00000023632	xrn2	89	86.545	Amphiprion_ocellaris
ENSCVAG00000018999	xrn2	98	93.690	ENSAPEG00000014871	xrn2	89	86.431	Amphiprion_percula
ENSCVAG00000018999	xrn2	98	93.690	ENSATEG00000001273	xrn2	90	86.545	Anabas_testudineus
ENSCVAG00000018999	xrn2	93	77.154	ENSAPLG00000013869	XRN2	90	71.145	Anas_platyrhynchos
ENSCVAG00000018999	xrn2	98	76.996	ENSACAG00000005565	XRN2	90	71.737	Anolis_carolinensis
ENSCVAG00000018999	xrn2	98	76.762	ENSANAG00000020126	XRN2	89	71.379	Aotus_nancymaae
ENSCVAG00000018999	xrn2	98	88.337	ENSACLG00000010522	xrn2	94	88.654	Astatotilapia_calliptera
ENSCVAG00000018999	xrn2	98	87.023	ENSAMXG00000018301	xrn2	92	79.731	Astyanax_mexicanus
ENSCVAG00000018999	xrn2	98	77.143	ENSBTAG00000011304	XRN2	89	71.494	Bos_taurus
ENSCVAG00000018999	xrn2	98	55.413	WBGene00006964	xrn-2	88	51.680	Caenorhabditis_elegans
ENSCVAG00000018999	xrn2	98	76.762	ENSCJAG00000005611	XRN2	89	71.379	Callithrix_jacchus
ENSCVAG00000018999	xrn2	98	76.952	ENSCAFG00000005185	XRN2	89	71.264	Canis_familiaris
ENSCVAG00000018999	xrn2	98	76.952	ENSCAFG00020027479	XRN2	89	71.264	Canis_lupus_dingo
ENSCVAG00000018999	xrn2	98	76.571	ENSCHIG00000006921	XRN2	89	71.494	Capra_hircus
ENSCVAG00000018999	xrn2	98	77.714	ENSTSYG00000008315	XRN2	89	71.494	Carlito_syrichta
ENSCVAG00000018999	xrn2	95	61.183	ENSCAPG00000010773	XRN2	88	60.520	Cavia_aperea
ENSCVAG00000018999	xrn2	98	77.524	ENSCPOG00000009407	XRN2	89	72.560	Cavia_porcellus
ENSCVAG00000018999	xrn2	98	76.762	ENSCATG00000040350	XRN2	90	71.494	Cercocebus_atys
ENSCVAG00000018999	xrn2	98	77.143	ENSCLAG00000013419	XRN2	89	71.839	Chinchilla_lanigera
ENSCVAG00000018999	xrn2	98	76.762	ENSCSAG00000011094	XRN2	89	71.494	Chlorocebus_sabaeus
ENSCVAG00000018999	xrn2	66	87.634	ENSCHOG00000013404	XRN2	63	87.634	Choloepus_hoffmanni
ENSCVAG00000018999	xrn2	98	77.905	ENSCPBG00000023533	XRN2	89	72.445	Chrysemys_picta_bellii
ENSCVAG00000018999	xrn2	94	65.294	ENSCING00000022336	-	100	58.726	Ciona_intestinalis
ENSCVAG00000018999	xrn2	88	69.070	ENSCSAVG00000011217	-	91	70.120	Ciona_savignyi
ENSCVAG00000018999	xrn2	98	76.762	ENSCANG00000040240	XRN2	89	71.494	Colobus_angolensis_palliatus
ENSCVAG00000018999	xrn2	98	77.714	ENSCGRG00001010676	Xrn2	91	72.184	Cricetulus_griseus_chok1gshd
ENSCVAG00000018999	xrn2	93	76.954	ENSCGRG00000006378	Xrn2	89	71.209	Cricetulus_griseus_crigri
ENSCVAG00000018999	xrn2	97	81.382	ENSCSEG00000005628	xrn2	100	81.190	Cynoglossus_semilaevis
ENSCVAG00000018999	xrn2	98	86.424	ENSDARG00000101900	xrn2	96	86.233	Danio_rerio
ENSCVAG00000018999	xrn2	98	76.952	ENSDNOG00000001895	XRN2	89	71.379	Dasypus_novemcinctus
ENSCVAG00000018999	xrn2	98	76.952	ENSDORG00000005434	Xrn2	89	70.575	Dipodomys_ordii
ENSCVAG00000018999	xrn2	87	63.812	FBgn0031868	Rat1	90	52.601	Drosophila_melanogaster
ENSCVAG00000018999	xrn2	89	80.292	ENSETEG00000001740	XRN2	82	80.292	Echinops_telfairi
ENSCVAG00000018999	xrn2	98	72.881	ENSEBUG00000016136	xrn2	100	66.909	Eptatretus_burgeri
ENSCVAG00000018999	xrn2	98	76.952	ENSEASG00005002484	XRN2	89	71.839	Equus_asinus_asinus
ENSCVAG00000018999	xrn2	92	92.308	ENSECAG00000018988	XRN2	85	92.308	Equus_caballus
ENSCVAG00000018999	xrn2	76	96.000	ENSEEUG00000009265	XRN2	67	96.000	Erinaceus_europaeus
ENSCVAG00000018999	xrn2	98	88.528	ENSELUG00000000552	xrn2	88	82.306	Esox_lucius
ENSCVAG00000018999	xrn2	98	76.952	ENSFCAG00000007970	XRN2	89	71.149	Felis_catus
ENSCVAG00000018999	xrn2	98	78.011	ENSFALG00000004508	XRN2	90	71.233	Ficedula_albicollis
ENSCVAG00000018999	xrn2	98	77.143	ENSFDAG00000016311	XRN2	89	71.609	Fukomys_damarensis
ENSCVAG00000018999	xrn2	97	87.356	ENSFHEG00000013039	xrn2	98	87.356	Fundulus_heteroclitus
ENSCVAG00000018999	xrn2	87	87.179	ENSGMOG00000013436	xrn2	100	77.671	Gadus_morhua
ENSCVAG00000018999	xrn2	98	77.438	ENSGALG00000008372	XRN2	90	70.909	Gallus_gallus
ENSCVAG00000018999	xrn2	98	94.264	ENSGAFG00000014284	xrn2	99	88.335	Gambusia_affinis
ENSCVAG00000018999	xrn2	97	88.676	ENSGACG00000011870	xrn2	96	88.484	Gasterosteus_aculeatus
ENSCVAG00000018999	xrn2	98	77.524	ENSGAGG00000004884	XRN2	89	72.101	Gopherus_agassizii
ENSCVAG00000018999	xrn2	98	76.762	ENSGGOG00000013738	XRN2	89	71.494	Gorilla_gorilla
ENSCVAG00000018999	xrn2	97	88.462	ENSHBUG00000005077	xrn2	94	88.462	Haplochromis_burtoni
ENSCVAG00000018999	xrn2	98	75.238	ENSHGLG00000014831	XRN2	89	70.690	Heterocephalus_glaber_female
ENSCVAG00000018999	xrn2	98	75.238	ENSHGLG00100013130	XRN2	89	70.690	Heterocephalus_glaber_male
ENSCVAG00000018999	xrn2	98	90.840	ENSHCOG00000011994	xrn2	94	79.909	Hippocampus_comes
ENSCVAG00000018999	xrn2	98	88.550	ENSIPUG00000006639	xrn2	93	79.218	Ictalurus_punctatus
ENSCVAG00000018999	xrn2	98	76.952	ENSSTOG00000000589	XRN2	89	71.724	Ictidomys_tridecemlineatus
ENSCVAG00000018999	xrn2	98	77.524	ENSJJAG00000022128	Xrn2	89	72.184	Jaculus_jaculus
ENSCVAG00000018999	xrn2	97	88.676	ENSLBEG00000010041	xrn2	100	88.676	Labrus_bergylta
ENSCVAG00000018999	xrn2	95	78.082	ENSLACG00000008307	XRN2	97	74.261	Latimeria_chalumnae
ENSCVAG00000018999	xrn2	98	82.443	ENSLOCG00000016874	xrn2	93	77.431	Lepisosteus_oculatus
ENSCVAG00000018999	xrn2	98	77.143	ENSLAFG00000014624	XRN2	89	71.757	Loxodonta_africana
ENSCVAG00000018999	xrn2	98	76.762	ENSMFAG00000038122	XRN2	89	71.494	Macaca_fascicularis
ENSCVAG00000018999	xrn2	98	76.762	ENSMMUG00000011405	XRN2	89	71.494	Macaca_mulatta
ENSCVAG00000018999	xrn2	98	76.762	ENSMNEG00000040626	XRN2	89	71.379	Macaca_nemestrina
ENSCVAG00000018999	xrn2	98	76.571	ENSMLEG00000041897	XRN2	89	71.379	Mandrillus_leucophaeus
ENSCVAG00000018999	xrn2	98	93.308	ENSMAMG00000008633	xrn2	90	85.975	Mastacembelus_armatus
ENSCVAG00000018999	xrn2	98	91.587	ENSMZEG00005022362	xrn2	98	86.023	Maylandia_zebra
ENSCVAG00000018999	xrn2	98	76.471	ENSMGAG00000003196	XRN2	90	70.475	Meleagris_gallopavo
ENSCVAG00000018999	xrn2	98	77.524	ENSMAUG00000021842	Xrn2	89	72.184	Mesocricetus_auratus
ENSCVAG00000018999	xrn2	98	77.333	ENSMICG00000008126	XRN2	89	71.379	Microcebus_murinus
ENSCVAG00000018999	xrn2	98	76.850	ENSMOCG00000012588	Xrn2	89	72.299	Microtus_ochrogaster
ENSCVAG00000018999	xrn2	98	91.205	ENSMMOG00000017576	xrn2	96	87.023	Mola_mola
ENSCVAG00000018999	xrn2	98	77.524	ENSMODG00000006163	XRN2	89	71.724	Monodelphis_domestica
ENSCVAG00000018999	xrn2	98	92.925	ENSMALG00000011355	xrn2	95	93.090	Monopterus_albus
ENSCVAG00000018999	xrn2	98	77.333	MGP_CAROLIEiJ_G0024400	Xrn2	89	71.379	Mus_caroli
ENSCVAG00000018999	xrn2	98	77.333	ENSMUSG00000027433	Xrn2	89	71.379	Mus_musculus
ENSCVAG00000018999	xrn2	98	77.333	MGP_PahariEiJ_G0025843	Xrn2	89	71.264	Mus_pahari
ENSCVAG00000018999	xrn2	98	77.333	MGP_SPRETEiJ_G0025318	Xrn2	94	77.391	Mus_spretus
ENSCVAG00000018999	xrn2	98	76.952	ENSMPUG00000001198	XRN2	83	70.124	Mustela_putorius_furo
ENSCVAG00000018999	xrn2	98	77.099	ENSMLUG00000001536	XRN2	89	71.577	Myotis_lucifugus
ENSCVAG00000018999	xrn2	98	77.333	ENSNGAG00000018138	Xrn2	89	71.839	Nannospalax_galili
ENSCVAG00000018999	xrn2	98	91.778	ENSNBRG00000008062	xrn2	98	86.023	Neolamprologus_brichardi
ENSCVAG00000018999	xrn2	98	76.762	ENSNLEG00000009991	XRN2	89	71.494	Nomascus_leucogenys
ENSCVAG00000018999	xrn2	56	84.444	ENSMEUG00000008622	-	53	84.444	Notamacropus_eugenii
ENSCVAG00000018999	xrn2	66	71.579	ENSOPRG00000001397	-	63	71.579	Ochotona_princeps
ENSCVAG00000018999	xrn2	98	77.143	ENSODEG00000010745	-	89	71.724	Octodon_degus
ENSCVAG00000018999	xrn2	95	70.117	ENSODEG00000000860	-	91	66.745	Octodon_degus
ENSCVAG00000018999	xrn2	98	91.778	ENSONIG00000018720	xrn2	89	83.977	Oreochromis_niloticus
ENSCVAG00000018999	xrn2	98	77.143	ENSOANG00000015673	XRN2	89	71.954	Ornithorhynchus_anatinus
ENSCVAG00000018999	xrn2	98	77.143	ENSOCUG00000013468	XRN2	89	71.954	Oryctolagus_cuniculus
ENSCVAG00000018999	xrn2	98	91.587	ENSORLG00000017213	xrn2	98	84.755	Oryzias_latipes
ENSCVAG00000018999	xrn2	98	91.587	ENSORLG00020001824	xrn2	91	84.371	Oryzias_latipes_hni
ENSCVAG00000018999	xrn2	98	91.396	ENSORLG00015019747	xrn2	91	84.032	Oryzias_latipes_hsok
ENSCVAG00000018999	xrn2	98	91.396	ENSOMEG00000019820	xrn2	89	83.805	Oryzias_melastigma
ENSCVAG00000018999	xrn2	98	76.894	ENSOGAG00000001068	XRN2	89	71.592	Otolemur_garnettii
ENSCVAG00000018999	xrn2	93	75.752	ENSOARG00000004443	XRN2	89	70.735	Ovis_aries
ENSCVAG00000018999	xrn2	98	76.762	ENSPPAG00000033549	XRN2	89	71.494	Pan_paniscus
ENSCVAG00000018999	xrn2	98	76.952	ENSPPRG00000008732	XRN2	89	71.149	Panthera_pardus
ENSCVAG00000018999	xrn2	93	76.152	ENSPTIG00000015683	XRN2	87	70.498	Panthera_tigris_altaica
ENSCVAG00000018999	xrn2	98	76.762	ENSPTRG00000013308	XRN2	89	71.494	Pan_troglodytes
ENSCVAG00000018999	xrn2	98	76.762	ENSPANG00000018088	XRN2	89	71.494	Papio_anubis
ENSCVAG00000018999	xrn2	98	86.042	ENSPKIG00000016889	xrn2	89	78.809	Paramormyrops_kingsleyae
ENSCVAG00000018999	xrn2	88	77.707	ENSPSIG00000014666	XRN2	99	73.522	Pelodiscus_sinensis
ENSCVAG00000018999	xrn2	98	77.524	ENSPEMG00000000111	Xrn2	89	71.839	Peromyscus_maniculatus_bairdii
ENSCVAG00000018999	xrn2	62	72.941	ENSPMAG00000002576	xrn2	99	72.941	Petromyzon_marinus
ENSCVAG00000018999	xrn2	98	93.881	ENSPFOG00000004182	xrn2	91	87.416	Poecilia_formosa
ENSCVAG00000018999	xrn2	98	94.073	ENSPLAG00000007351	xrn2	98	88.562	Poecilia_latipinna
ENSCVAG00000018999	xrn2	88	93.603	ENSPMEG00000011798	xrn2	91	86.842	Poecilia_mexicana
ENSCVAG00000018999	xrn2	98	93.881	ENSPREG00000012452	xrn2	98	86.966	Poecilia_reticulata
ENSCVAG00000018999	xrn2	98	76.762	ENSPPYG00000010755	XRN2	89	71.149	Pongo_abelii
ENSCVAG00000018999	xrn2	98	76.762	ENSPCAG00000011191	XRN2	89	67.317	Procavia_capensis
ENSCVAG00000018999	xrn2	98	68.381	ENSPCOG00000016468	XRN2	88	64.943	Propithecus_coquereli
ENSCVAG00000018999	xrn2	98	63.238	ENSPVAG00000004596	XRN2	82	64.539	Pteropus_vampyrus
ENSCVAG00000018999	xrn2	98	88.337	ENSPNYG00000001765	xrn2	98	84.091	Pundamilia_nyererei
ENSCVAG00000018999	xrn2	98	85.878	ENSPNAG00000010956	xrn2	90	78.965	Pygocentrus_nattereri
ENSCVAG00000018999	xrn2	98	77.714	ENSRNOG00000011785	Xrn2	89	71.954	Rattus_norvegicus
ENSCVAG00000018999	xrn2	98	76.762	ENSRBIG00000036193	XRN2	100	73.165	Rhinopithecus_bieti
ENSCVAG00000018999	xrn2	98	76.762	ENSRROG00000044400	XRN2	81	71.494	Rhinopithecus_roxellana
ENSCVAG00000018999	xrn2	82	51.092	YOR048C	RAT1	64	53.753	Saccharomyces_cerevisiae
ENSCVAG00000018999	xrn2	98	76.762	ENSSBOG00000021014	XRN2	89	71.494	Saimiri_boliviensis_boliviensis
ENSCVAG00000018999	xrn2	98	86.998	ENSSFOG00015001091	xrn2	90	79.793	Scleropages_formosus
ENSCVAG00000018999	xrn2	98	91.794	ENSSMAG00000007834	xrn2	88	85.308	Scophthalmus_maximus
ENSCVAG00000018999	xrn2	98	91.412	ENSSDUG00000012802	xrn2	99	85.568	Seriola_dumerili
ENSCVAG00000018999	xrn2	98	94.646	ENSSLDG00000021273	xrn2	98	86.887	Seriola_lalandi_dorsalis
ENSCVAG00000018999	xrn2	60	96.000	ENSSARG00000005859	-	56	96.000	Sorex_araneus
ENSCVAG00000018999	xrn2	98	79.087	ENSSPUG00000005485	XRN2	88	73.303	Sphenodon_punctatus
ENSCVAG00000018999	xrn2	98	93.117	ENSSPAG00000016027	xrn2	89	86.203	Stegastes_partitus
ENSCVAG00000018999	xrn2	98	76.571	ENSSSCG00000007109	XRN2	89	69.885	Sus_scrofa
ENSCVAG00000018999	xrn2	98	76.000	ENSTGUG00000007535	XRN2	90	70.387	Taeniopygia_guttata
ENSCVAG00000018999	xrn2	98	89.484	ENSTRUG00000015489	xrn2	88	82.313	Takifugu_rubripes
ENSCVAG00000018999	xrn2	98	87.619	ENSTNIG00000010712	xrn2	90	80.974	Tetraodon_nigroviridis
ENSCVAG00000018999	xrn2	98	76.571	ENSTBEG00000004119	XRN2	89	71.264	Tupaia_belangeri
ENSCVAG00000018999	xrn2	98	76.236	ENSTTRG00000009087	XRN2	82	76.977	Tursiops_truncatus
ENSCVAG00000018999	xrn2	98	76.952	ENSUAMG00000024634	XRN2	96	85.158	Ursus_americanus
ENSCVAG00000018999	xrn2	93	76.152	ENSUMAG00000004012	XRN2	84	70.769	Ursus_maritimus
ENSCVAG00000018999	xrn2	78	83.172	ENSVPAG00000010694	XRN2	74	83.172	Vicugna_pacos
ENSCVAG00000018999	xrn2	98	76.952	ENSVVUG00000012178	XRN2	89	71.379	Vulpes_vulpes
ENSCVAG00000018999	xrn2	98	79.619	ENSXETG00000023501	xrn2	91	73.174	Xenopus_tropicalis
ENSCVAG00000018999	xrn2	98	94.264	ENSXMAG00000000242	xrn2	92	89.538	Xiphophorus_maculatus