EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000019081 (Gene tree)
Gene ID: 107087432
Gene Symbol: prdm1a
Alias: Blimp-1|Blimp1|U boot|narrowminded|nrd|prdm1|u-boot|ubo|wu:fb99c12|zgc:91885
Full Name: PR/SET domain 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 14179 bases
Position: chrKL652500.1:2912124-2926302
Accession: 107087432
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000030505	zf-C2H2	PF00096.26	3.3e-16	1	3
ENSCVAP00000030505	zf-C2H2	PF00096.26	3.3e-16	2	3
ENSCVAP00000030505	zf-C2H2	PF00096.26	3.3e-16	3	3
ENSCVAP00000016177	zf-C2H2	PF00096.26	5.6e-16	1	3
ENSCVAP00000016177	zf-C2H2	PF00096.26	5.6e-16	2	3
ENSCVAP00000016177	zf-C2H2	PF00096.26	5.6e-16	3	3
ENSCVAP00000030505	zf-met	PF12874.7	8.3e-05	1	1
ENSCVAP00000016177	zf-met	PF12874.7	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000024457	-	2286	-	ENSCVAP00000030505	761 (aa)	-	-
ENSCVAT00000031816	-	4358	XM_015379039	ENSCVAP00000016177	844 (aa)	XP_015234525	UPI00074252E9

Gene Model

Click here to download ENSCVAG00000019081's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000019081's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000019081	prdm1a	99	46.086	ENSAPOG00000014135	-	99	43.003	Acanthochromis_polyacanthus
ENSCVAG00000019081	prdm1a	98	45.455	ENSACIG00000009747	-	99	42.726	Amphilophus_citrinellus
ENSCVAG00000019081	prdm1a	52	66.667	ENSACIG00000014426	prdm1b	65	66.667	Amphilophus_citrinellus
ENSCVAG00000019081	prdm1a	60	61.972	ENSAOCG00000002230	prdm1b	69	61.972	Amphiprion_ocellaris
ENSCVAG00000019081	prdm1a	74	54.286	ENSAPEG00000019826	prdm1b	67	61.972	Amphiprion_percula
ENSCVAG00000019081	prdm1a	61	63.380	ENSATEG00000006924	prdm1b	87	52.508	Anabas_testudineus
ENSCVAG00000019081	prdm1a	99	81.184	ENSATEG00000021017	prdm1a	99	81.184	Anabas_testudineus
ENSCVAG00000019081	prdm1a	99	45.069	ENSATEG00000014034	-	95	44.900	Anabas_testudineus
ENSCVAG00000019081	prdm1a	100	79.347	ENSCSEG00000009707	prdm1a	100	79.347	Cynoglossus_semilaevis
ENSCVAG00000019081	prdm1a	64	59.155	ENSFHEG00000019848	prdm1b	62	59.155	Fundulus_heteroclitus
ENSCVAG00000019081	prdm1a	91	42.943	ENSGAFG00000013012	-	92	43.984	Gambusia_affinis
ENSCVAG00000019081	prdm1a	72	54.913	ENSGAFG00000016191	prdm1b	62	60.000	Gambusia_affinis
ENSCVAG00000019081	prdm1a	52	60.870	ENSGACG00000002716	prdm1b	60	55.488	Gasterosteus_aculeatus
ENSCVAG00000019081	prdm1a	59	54.483	ENSIPUG00000013740	prdm1b	63	55.172	Ictalurus_punctatus
ENSCVAG00000019081	prdm1a	100	79.279	ENSKMAG00000017597	prdm1a	100	77.846	Kryptolebias_marmoratus
ENSCVAG00000019081	prdm1a	98	43.625	ENSKMAG00000016247	-	99	42.197	Kryptolebias_marmoratus
ENSCVAG00000019081	prdm1a	79	40.453	ENSKMAG00000011218	prdm1b	50	62.162	Kryptolebias_marmoratus
ENSCVAG00000019081	prdm1a	80	55.429	ENSLBEG00000020955	prdm1b	73	58.282	Labrus_bergylta
ENSCVAG00000019081	prdm1a	92	43.324	ENSLOCG00000004978	prdm1b	89	43.443	Lepisosteus_oculatus
ENSCVAG00000019081	prdm1a	60	61.842	ENSMMOG00000013458	prdm1b	56	61.842	Mola_mola
ENSCVAG00000019081	prdm1a	97	44.987	ENSMALG00000000462	-	95	45.513	Monopterus_albus
ENSCVAG00000019081	prdm1a	98	43.813	ENSONIG00000014709	-	98	44.219	Oreochromis_niloticus
ENSCVAG00000019081	prdm1a	72	56.571	ENSONIG00000013583	prdm1b	60	58.333	Oreochromis_niloticus
ENSCVAG00000019081	prdm1a	58	61.194	ENSORLG00000010025	prdm1b	65	61.194	Oryzias_latipes
ENSCVAG00000019081	prdm1a	56	59.420	ENSORLG00015009022	prdm1b	52	59.420	Oryzias_latipes_hsok
ENSCVAG00000019081	prdm1a	53	61.233	ENSPKIG00000022335	prdm1b	61	55.431	Paramormyrops_kingsleyae
ENSCVAG00000019081	prdm1a	84	42.466	ENSPFOG00000003103	prdm1b	72	57.778	Poecilia_formosa
ENSCVAG00000019081	prdm1a	57	61.111	ENSPLAG00000018491	prdm1b	53	61.111	Poecilia_latipinna
ENSCVAG00000019081	prdm1a	58	60.563	ENSPMEG00000007869	prdm1b	55	60.563	Poecilia_mexicana
ENSCVAG00000019081	prdm1a	58	61.111	ENSPREG00000011327	prdm1b	54	61.111	Poecilia_reticulata
ENSCVAG00000019081	prdm1a	99	53.511	ENSPVAG00000011732	PRDM1	99	53.742	Pteropus_vampyrus
ENSCVAG00000019081	prdm1a	99	59.744	ENSPNAG00000028442	prdm1a	99	55.734	Pygocentrus_nattereri
ENSCVAG00000019081	prdm1a	54	60.345	ENSSFOG00015021896	prdm1b	57	60.345	Scleropages_formosus
ENSCVAG00000019081	prdm1a	99	44.099	ENSSMAG00000017518	-	80	52.575	Scophthalmus_maximus
ENSCVAG00000019081	prdm1a	65	55.429	ENSSMAG00000020467	prdm1b	60	70.000	Scophthalmus_maximus
ENSCVAG00000019081	prdm1a	99	45.443	ENSSDUG00000000524	-	99	43.880	Seriola_dumerili
ENSCVAG00000019081	prdm1a	65	63.380	ENSSDUG00000020610	prdm1b	71	63.380	Seriola_dumerili
ENSCVAG00000019081	prdm1a	99	45.443	ENSSLDG00000001957	-	99	42.841	Seriola_lalandi_dorsalis
ENSCVAG00000019081	prdm1a	73	55.429	ENSSLDG00000021973	prdm1b	56	63.380	Seriola_lalandi_dorsalis
ENSCVAG00000019081	prdm1a	56	61.972	ENSSPAG00000000803	prdm1b	68	61.972	Stegastes_partitus
ENSCVAG00000019081	prdm1a	99	46.305	ENSSPAG00000009830	-	99	43.349	Stegastes_partitus
ENSCVAG00000019081	prdm1a	84	73.423	ENSTNIG00000003926	prdm1a	99	75.672	Tetraodon_nigroviridis
ENSCVAG00000019081	prdm1a	69	54.857	ENSXCOG00000018920	prdm1b	60	58.015	Xiphophorus_couchianus
ENSCVAG00000019081	prdm1a	55	59.722	ENSXMAG00000016765	prdm1b	54	59.722	Xiphophorus_maculatus