EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000019089 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 19087 bases
Position: chrKL654116.1:34376-53462
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000030503	zf-C2H2	PF00096.26	9.2e-12	1	2
ENSCVAP00000030503	zf-C2H2	PF00096.26	9.2e-12	2	2
ENSCVAP00000030503	zf-met	PF12874.7	1.7e-07	1	2
ENSCVAP00000030503	zf-met	PF12874.7	1.7e-07	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000031817	-	1233	-	ENSCVAP00000030503	410 (aa)	-	-

Gene Model

Click here to download ENSCVAG00000019089's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000019089's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000019089	-	57	33.750	ENSCVAG00000000944	-	58	33.750

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000019089	-	86	65.561	ENSAOCG00000015241	PRDM15	50	68.579	Amphiprion_ocellaris
ENSCVAG00000019089	-	86	65.561	ENSAPEG00000016305	PRDM15	50	68.120	Amphiprion_percula
ENSCVAG00000019089	-	86	59.221	ENSAMXG00000008771	PRDM15	50	59.140	Astyanax_mexicanus
ENSCVAG00000019089	-	86	87.097	ENSCHIG00000016222	PRDM15	93	51.716	Capra_hircus
ENSCVAG00000019089	-	86	69.444	ENSDARG00000098867	PRDM15	53	61.690	Danio_rerio
ENSCVAG00000019089	-	83	89.744	ENSGAFG00000015673	PRDM15	52	68.974	Gambusia_affinis
ENSCVAG00000019089	-	93	55.396	ENSIPUG00000018510	-	70	80.128	Ictalurus_punctatus
ENSCVAG00000019089	-	86	86.139	ENSMMOG00000005844	PRDM15	89	50.952	Mola_mola
ENSCVAG00000019089	-	87	60.902	ENSNBRG00000018449	PRDM15	50	48.990	Neolamprologus_brichardi
ENSCVAG00000019089	-	68	60.920	ENSPMAG00000009794	PRDM15	58	60.920	Petromyzon_marinus
ENSCVAG00000019089	-	86	67.085	ENSPLAG00000016134	PRDM15	51	64.070	Poecilia_latipinna
ENSCVAG00000019089	-	86	67.588	ENSPREG00000009745	PRDM15	50	64.824	Poecilia_reticulata
ENSCVAG00000019089	-	86	65.266	ENSPNAG00000021304	PRDM15	52	63.585	Pygocentrus_nattereri
ENSCVAG00000019089	-	86	62.814	ENSSPAG00000010791	PRDM15	50	65.854	Stegastes_partitus
ENSCVAG00000019089	-	95	65.196	ENSTRUG00000001452	PRDM15	90	66.234	Takifugu_rubripes
ENSCVAG00000019089	-	87	61.772	ENSTNIG00000004148	-	52	46.819	Tetraodon_nigroviridis