EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000019356 (Gene tree)
Gene ID: 107101099
Gene Symbol: -
Alias: -
Full Name: elongation factor 1-alpha
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 3920 bases
Position: chrKL653553.1:171207-175126
Accession: 107101099
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000030642	GTP_EFTU	PF00009.27	9.7e-54	1	1
ENSCVAP00000016391	GTP_EFTU	PF00009.27	1.3e-53	1	1
ENSCVAP00000030642	GTP_EFTU_D2	PF03144.25	7.6e-15	1	1
ENSCVAP00000016391	GTP_EFTU_D2	PF03144.25	1.1e-14	1	1
ENSCVAP00000030642	GTP_EFTU_D3	PF03143.17	2.1e-42	1	1
ENSCVAP00000016391	GTP_EFTU_D3	PF03143.17	3.6e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000031901	-	1960	-	ENSCVAP00000016391	494 (aa)	-	-
ENSCVAT00000031897	-	2113	XM_015399863	ENSCVAP00000030642	461 (aa)	XP_015255349	UPI0007428F4F

Gene Model

Click here to download ENSCVAG00000019356's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000019356's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000019356	-	100	87.446	ENSCVAG00000009938	eef1a1b	98	88.053
ENSCVAG00000019356	-	92	88.679	ENSCVAG00000021241	-	99	88.679
ENSCVAG00000019356	-	100	87.879	ENSCVAG00000002957	-	98	88.274
ENSCVAG00000019356	-	99	69.130	ENSCVAG00000009828	si:dkey-37o8.1	98	70.246
ENSCVAG00000019356	-	85	35.806	ENSCVAG00000016392	-	74	35.038
ENSCVAG00000019356	-	95	42.563	ENSCVAG00000001462	hbs1l	61	42.563
ENSCVAG00000019356	-	86	30.275	ENSCVAG00000006251	tufm	88	30.275
ENSCVAG00000019356	-	100	79.654	ENSCVAG00000019378	-	97	80.134
ENSCVAG00000019356	-	95	38.322	ENSCVAG00000000869	GSPT1	73	38.375

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000019356	-	100	94.360	ENSAPOG00000004714	-	100	94.360	Acanthochromis_polyacanthus
ENSCVAG00000019356	-	90	95.400	ENSACIG00000001219	-	97	95.533	Amphilophus_citrinellus
ENSCVAG00000019356	-	100	90.889	ENSAOCG00000022039	-	98	91.353	Amphiprion_ocellaris
ENSCVAG00000019356	-	87	95.782	ENSAOCG00000022002	-	98	95.782	Amphiprion_ocellaris
ENSCVAG00000019356	-	100	91.323	ENSAPEG00000016361	-	98	91.796	Amphiprion_percula
ENSCVAG00000019356	-	100	96.746	ENSATEG00000003244	-	97	96.746	Anabas_testudineus
ENSCVAG00000019356	-	100	95.228	ENSACLG00000022560	-	98	95.344	Astatotilapia_calliptera
ENSCVAG00000019356	-	100	83.333	WBGene00001169	eef-1A.2	98	83.850	Caenorhabditis_elegans
ENSCVAG00000019356	-	100	83.333	WBGene00001168	eef-1A.1	98	83.850	Caenorhabditis_elegans
ENSCVAG00000019356	-	98	81.099	ENSCING00000005126	-	98	81.099	Ciona_intestinalis
ENSCVAG00000019356	-	98	80.617	ENSCING00000018894	-	97	80.617	Ciona_intestinalis
ENSCVAG00000019356	-	100	78.755	ENSCING00000007703	-	97	78.947	Ciona_intestinalis
ENSCVAG00000019356	-	99	84.498	ENSCING00000021478	-	98	85.078	Ciona_intestinalis
ENSCVAG00000019356	-	98	82.637	ENSCSAVG00000009663	-	98	82.637	Ciona_savignyi
ENSCVAG00000019356	-	99	76.253	ENSCSAVG00000001085	-	89	77.354	Ciona_savignyi
ENSCVAG00000019356	-	98	81.046	ENSCSAVG00000003196	-	98	81.046	Ciona_savignyi
ENSCVAG00000019356	-	99	84.464	ENSCSAVG00000006357	-	96	94.000	Ciona_savignyi
ENSCVAG00000019356	-	90	86.473	ENSCSEG00000007972	-	98	86.881	Cynoglossus_semilaevis
ENSCVAG00000019356	-	98	94.678	ENSCSEG00000008011	-	98	94.678	Cynoglossus_semilaevis
ENSCVAG00000019356	-	89	86.165	ENSCSEG00000007992	-	97	86.352	Cynoglossus_semilaevis
ENSCVAG00000019356	-	100	86.580	FBgn0284245	eEF1alpha1	97	87.054	Drosophila_melanogaster
ENSCVAG00000019356	-	98	85.619	FBgn0000557	eEF1alpha2	98	85.619	Drosophila_melanogaster
ENSCVAG00000019356	-	99	82.826	ENSEBUG00000015814	-	98	83.370	Eptatretus_burgeri
ENSCVAG00000019356	-	100	99.132	ENSFHEG00000015054	-	100	99.132	Fundulus_heteroclitus
ENSCVAG00000019356	-	100	98.265	ENSGAFG00000014646	-	100	98.265	Gambusia_affinis
ENSCVAG00000019356	-	98	95.122	ENSGACG00000002182	-	98	95.122	Gasterosteus_aculeatus
ENSCVAG00000019356	-	100	93.275	ENSGACG00000002143	-	98	93.570	Gasterosteus_aculeatus
ENSCVAG00000019356	-	55	93.281	ENSHBUG00000017166	-	91	93.416	Haplochromis_burtoni
ENSCVAG00000019356	-	99	84.816	ENSHCOG00000008489	-	97	85.045	Hippocampus_comes
ENSCVAG00000019356	-	98	95.787	ENSHCOG00000008468	-	98	95.787	Hippocampus_comes
ENSCVAG00000019356	-	99	84.565	ENSLBEG00000002955	-	98	84.701	Labrus_bergylta
ENSCVAG00000019356	-	98	95.122	ENSLBEG00000002759	-	98	95.122	Labrus_bergylta
ENSCVAG00000019356	-	100	98.048	ENSMAMG00000007715	-	100	98.048	Mastacembelus_armatus
ENSCVAG00000019356	-	98	93.792	ENSMMOG00000001165	-	100	95.455	Mola_mola
ENSCVAG00000019356	-	99	76.754	ENSMMOG00000018160	-	95	86.957	Mola_mola
ENSCVAG00000019356	-	99	86.739	ENSMMOG00000001106	-	98	87.140	Mola_mola
ENSCVAG00000019356	-	100	84.599	ENSNBRG00000017346	-	97	84.479	Neolamprologus_brichardi
ENSCVAG00000019356	-	76	92.614	ENSONIG00000017760	-	98	92.614	Oreochromis_niloticus
ENSCVAG00000019356	-	100	97.831	ENSORLG00000007614	eef1a	100	97.831	Oryzias_latipes
ENSCVAG00000019356	-	100	97.831	ENSORLG00015002397	-	100	97.831	Oryzias_latipes_hsok
ENSCVAG00000019356	-	100	98.698	ENSOMEG00000018226	-	100	98.698	Oryzias_melastigma
ENSCVAG00000019356	-	98	95.796	ENSPMGG00000023911	-	100	98.837	Periophthalmus_magnuspinnatus
ENSCVAG00000019356	-	95	48.519	ENSPMGG00000022427	-	97	60.000	Periophthalmus_magnuspinnatus
ENSCVAG00000019356	-	100	98.482	ENSPFOG00000003924	-	100	98.305	Poecilia_formosa
ENSCVAG00000019356	-	100	98.482	ENSPLAG00000004316	-	100	98.482	Poecilia_latipinna
ENSCVAG00000019356	-	100	98.698	ENSPMEG00000001010	-	100	98.698	Poecilia_mexicana
ENSCVAG00000019356	-	100	98.265	ENSPREG00000008243	-	100	98.265	Poecilia_reticulata
ENSCVAG00000019356	-	100	95.228	ENSPNYG00000007263	-	98	95.344	Pundamilia_nyererei
ENSCVAG00000019356	-	97	81.124	YPR080W	TEF1	98	80.488	Saccharomyces_cerevisiae
ENSCVAG00000019356	-	97	81.124	YBR118W	TEF2	98	80.488	Saccharomyces_cerevisiae
ENSCVAG00000019356	-	53	92.623	ENSSMAG00000016277	-	96	92.623	Scophthalmus_maximus
ENSCVAG00000019356	-	98	83.298	ENSSMAG00000018469	-	98	83.298	Scophthalmus_maximus
ENSCVAG00000019356	-	100	96.746	ENSSDUG00000008198	-	100	96.746	Seriola_dumerili
ENSCVAG00000019356	-	98	94.235	ENSSPAG00000001710	-	98	94.235	Stegastes_partitus
ENSCVAG00000019356	-	98	95.344	ENSTRUG00000005727	ef-1a	98	95.344	Takifugu_rubripes
ENSCVAG00000019356	-	99	86.739	ENSTRUG00000005066	-	98	87.140	Takifugu_rubripes
ENSCVAG00000019356	-	98	95.787	ENSTNIG00000002619	-	98	95.787	Tetraodon_nigroviridis
ENSCVAG00000019356	-	99	82.826	ENSTNIG00000002617	-	94	84.633	Tetraodon_nigroviridis
ENSCVAG00000019356	-	100	98.482	ENSXCOG00000001542	-	100	100.000	Xiphophorus_couchianus