EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000019531 (Gene tree)
Gene ID: 107095505
Gene Symbol: ddb1
Alias: zgc:63840
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 63101 bases
Position: chrKL652522.1:885571-948671
Accession: 107095505
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000016510	CPSF_A	PF03178.15	4.6e-76	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000024932	-	3381	XM_015391639	ENSCVAP00000016510	1080 (aa)	XP_015247125	-

Gene Model

Click here to download ENSCVAG00000019531's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000019531's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000019531	ddb1	99	91.333	ENSG00000167986	DDB1	100	96.575	Homo_sapiens
ENSCVAG00000019531	ddb1	99	97.484	ENSAPOG00000005036	ddb1	99	97.653	Acanthochromis_polyacanthus
ENSCVAG00000019531	ddb1	99	91.426	ENSAMEG00000016518	DDB1	94	91.426	Ailuropoda_melanoleuca
ENSCVAG00000019531	ddb1	91	97.959	ENSACIG00000020624	ddb1	99	97.959	Amphilophus_citrinellus
ENSCVAG00000019531	ddb1	99	97.390	ENSAOCG00000003066	ddb1	94	97.390	Amphiprion_ocellaris
ENSCVAG00000019531	ddb1	99	97.488	ENSAPEG00000000092	ddb1	99	97.488	Amphiprion_percula
ENSCVAG00000019531	ddb1	99	97.952	ENSATEG00000020571	ddb1	97	97.952	Anabas_testudineus
ENSCVAG00000019531	ddb1	98	90.179	ENSAPLG00000007174	DDB1	93	90.179	Anas_platyrhynchos
ENSCVAG00000019531	ddb1	99	90.587	ENSACAG00000017758	DDB1	94	90.587	Anolis_carolinensis
ENSCVAG00000019531	ddb1	99	91.333	ENSANAG00000021878	DDB1	94	91.333	Aotus_nancymaae
ENSCVAG00000019531	ddb1	99	97.577	ENSACLG00000012401	ddb1	99	97.092	Astatotilapia_calliptera
ENSCVAG00000019531	ddb1	57	30.464	ENSAMXG00000008485	cpsf1	52	30.464	Astyanax_mexicanus
ENSCVAG00000019531	ddb1	99	91.333	ENSBTAG00000021569	DDB1	88	91.333	Bos_taurus
ENSCVAG00000019531	ddb1	99	37.296	WBGene00010890	ddb-1	94	37.296	Caenorhabditis_elegans
ENSCVAG00000019531	ddb1	99	91.333	ENSCJAG00000019319	DDB1	94	91.333	Callithrix_jacchus
ENSCVAG00000019531	ddb1	99	91.620	ENSCAFG00000016264	DDB1	99	91.620	Canis_familiaris
ENSCVAG00000019531	ddb1	99	91.620	ENSCAFG00020012722	DDB1	99	91.620	Canis_lupus_dingo
ENSCVAG00000019531	ddb1	99	91.333	ENSCHIG00000014969	DDB1	94	91.333	Capra_hircus
ENSCVAG00000019531	ddb1	99	90.960	ENSTSYG00000008027	DDB1	94	90.960	Carlito_syrichta
ENSCVAG00000019531	ddb1	97	91.160	ENSCAPG00000010786	DDB1	94	91.160	Cavia_aperea
ENSCVAG00000019531	ddb1	99	91.146	ENSCPOG00000009956	DDB1	94	91.146	Cavia_porcellus
ENSCVAG00000019531	ddb1	99	91.333	ENSCCAG00000035883	DDB1	94	91.333	Cebus_capucinus
ENSCVAG00000019531	ddb1	99	89.362	ENSCATG00000044495	DDB1	94	89.362	Cercocebus_atys
ENSCVAG00000019531	ddb1	99	91.240	ENSCLAG00000004126	DDB1	94	91.240	Chinchilla_lanigera
ENSCVAG00000019531	ddb1	99	91.333	ENSCSAG00000006392	DDB1	94	91.333	Chlorocebus_sabaeus
ENSCVAG00000019531	ddb1	89	84.016	ENSCHOG00000011377	DDB1	86	84.016	Choloepus_hoffmanni
ENSCVAG00000019531	ddb1	99	90.960	ENSCPBG00000017728	DDB1	94	90.960	Chrysemys_picta_bellii
ENSCVAG00000019531	ddb1	99	61.460	ENSCING00000007437	-	94	61.460	Ciona_intestinalis
ENSCVAG00000019531	ddb1	93	60.609	ENSCSAVG00000004783	-	100	60.285	Ciona_savignyi
ENSCVAG00000019531	ddb1	99	91.333	ENSCANG00000019948	DDB1	94	91.333	Colobus_angolensis_palliatus
ENSCVAG00000019531	ddb1	99	91.426	ENSCGRG00001016599	Ddb1	98	90.485	Cricetulus_griseus_chok1gshd
ENSCVAG00000019531	ddb1	99	91.426	ENSCGRG00000013427	Ddb1	94	91.426	Cricetulus_griseus_crigri
ENSCVAG00000019531	ddb1	98	97.172	ENSCSEG00000012499	ddb1	99	95.648	Cynoglossus_semilaevis
ENSCVAG00000019531	ddb1	99	91.511	ENSDARG00000074431	ddb1	94	91.511	Danio_rerio
ENSCVAG00000019531	ddb1	99	91.620	ENSDNOG00000014884	DDB1	97	91.620	Dasypus_novemcinctus
ENSCVAG00000019531	ddb1	82	95.455	ENSDORG00000000127	Ddb1	93	95.455	Dipodomys_ordii
ENSCVAG00000019531	ddb1	99	60.853	FBgn0260962	pic	94	60.853	Drosophila_melanogaster
ENSCVAG00000019531	ddb1	75	30.065	FBgn0024698	Cpsf160	63	30.065	Drosophila_melanogaster
ENSCVAG00000019531	ddb1	68	95.276	ENSETEG00000001053	-	64	95.276	Echinops_telfairi
ENSCVAG00000019531	ddb1	82	84.027	ENSEBUG00000014593	ddb1	97	84.027	Eptatretus_burgeri
ENSCVAG00000019531	ddb1	99	91.426	ENSEASG00005008184	DDB1	94	91.426	Equus_asinus_asinus
ENSCVAG00000019531	ddb1	99	91.519	ENSECAG00000012136	DDB1	94	91.519	Equus_caballus
ENSCVAG00000019531	ddb1	90	87.037	ENSEEUG00000003194	DDB1	85	87.037	Erinaceus_europaeus
ENSCVAG00000019531	ddb1	99	96.086	ENSELUG00000023868	ddb1	94	96.086	Esox_lucius
ENSCVAG00000019531	ddb1	99	91.426	ENSFCAG00000029716	DDB1	94	91.426	Felis_catus
ENSCVAG00000019531	ddb1	99	90.968	ENSFALG00000011981	DDB1	94	90.968	Ficedula_albicollis
ENSCVAG00000019531	ddb1	99	91.240	ENSFDAG00000005128	DDB1	94	91.240	Fukomys_damarensis
ENSCVAG00000019531	ddb1	89	99.457	ENSFHEG00000022133	ddb1	93	99.457	Fundulus_heteroclitus
ENSCVAG00000019531	ddb1	83	97.993	ENSGMOG00000019386	ddb1	94	97.993	Gadus_morhua
ENSCVAG00000019531	ddb1	99	90.867	ENSGALG00000042333	DDB1	94	90.867	Gallus_gallus
ENSCVAG00000019531	ddb1	99	98.517	ENSGAFG00000013142	ddb1	99	98.517	Gambusia_affinis
ENSCVAG00000019531	ddb1	99	97.290	ENSGACG00000017182	ddb1	98	97.290	Gasterosteus_aculeatus
ENSCVAG00000019531	ddb1	94	90.757	ENSGAGG00000014124	DDB1	94	90.757	Gopherus_agassizii
ENSCVAG00000019531	ddb1	99	91.333	ENSGGOG00000004052	DDB1	94	91.333	Gorilla_gorilla
ENSCVAG00000019531	ddb1	99	97.577	ENSHBUG00000008873	ddb1	94	97.577	Haplochromis_burtoni
ENSCVAG00000019531	ddb1	99	91.240	ENSHGLG00000018430	DDB1	94	91.240	Heterocephalus_glaber_female
ENSCVAG00000019531	ddb1	99	90.214	ENSHGLG00100014475	DDB1	94	90.214	Heterocephalus_glaber_male
ENSCVAG00000019531	ddb1	99	97.124	ENSHCOG00000018670	ddb1	99	97.124	Hippocampus_comes
ENSCVAG00000019531	ddb1	100	94.907	ENSIPUG00000005612	DDB1	98	94.907	Ictalurus_punctatus
ENSCVAG00000019531	ddb1	99	91.333	ENSSTOG00000007552	DDB1	94	91.333	Ictidomys_tridecemlineatus
ENSCVAG00000019531	ddb1	99	91.333	ENSJJAG00000017769	Ddb1	94	91.333	Jaculus_jaculus
ENSCVAG00000019531	ddb1	99	98.140	ENSKMAG00000002315	ddb1	100	98.140	Kryptolebias_marmoratus
ENSCVAG00000019531	ddb1	89	97.815	ENSLBEG00000017065	ddb1	99	97.815	Labrus_bergylta
ENSCVAG00000019531	ddb1	99	90.884	ENSLACG00000017611	DDB1	97	90.892	Latimeria_chalumnae
ENSCVAG00000019531	ddb1	91	86.814	ENSLOCG00000000012	ddb1	93	86.814	Lepisosteus_oculatus
ENSCVAG00000019531	ddb1	99	91.240	ENSLAFG00000011513	DDB1	94	91.240	Loxodonta_africana
ENSCVAG00000019531	ddb1	99	91.333	ENSMFAG00000042035	DDB1	94	91.333	Macaca_fascicularis
ENSCVAG00000019531	ddb1	58	30.065	ENSMMUG00000007380	CPSF1	56	30.065	Macaca_mulatta
ENSCVAG00000019531	ddb1	99	91.333	ENSMMUG00000002691	DDB1	100	90.789	Macaca_mulatta
ENSCVAG00000019531	ddb1	99	91.333	ENSMNEG00000031559	DDB1	94	91.333	Macaca_nemestrina
ENSCVAG00000019531	ddb1	99	91.333	ENSMLEG00000044136	DDB1	98	89.963	Mandrillus_leucophaeus
ENSCVAG00000019531	ddb1	99	98.043	ENSMAMG00000014372	ddb1	94	98.043	Mastacembelus_armatus
ENSCVAG00000019531	ddb1	99	97.484	ENSMZEG00005013835	ddb1	94	97.484	Maylandia_zebra
ENSCVAG00000019531	ddb1	93	90.538	ENSMGAG00000004990	DDB1	93	90.538	Meleagris_gallopavo
ENSCVAG00000019531	ddb1	99	91.426	ENSMAUG00000012926	Ddb1	94	91.426	Mesocricetus_auratus
ENSCVAG00000019531	ddb1	99	91.519	ENSMICG00000013703	DDB1	94	91.519	Microcebus_murinus
ENSCVAG00000019531	ddb1	99	91.333	ENSMOCG00000020499	Ddb1	94	91.333	Microtus_ochrogaster
ENSCVAG00000019531	ddb1	91	97.959	ENSMMOG00000001758	ddb1	99	97.959	Mola_mola
ENSCVAG00000019531	ddb1	99	83.225	ENSMODG00000020353	DDB1	93	83.225	Monodelphis_domestica
ENSCVAG00000019531	ddb1	99	97.670	ENSMALG00000014071	ddb1	94	97.670	Monopterus_albus
ENSCVAG00000019531	ddb1	99	91.426	MGP_CAROLIEiJ_G0022695	Ddb1	94	91.426	Mus_caroli
ENSCVAG00000019531	ddb1	99	91.519	ENSMUSG00000024740	Ddb1	94	91.519	Mus_musculus
ENSCVAG00000019531	ddb1	99	91.426	MGP_PahariEiJ_G0014189	Ddb1	94	91.426	Mus_pahari
ENSCVAG00000019531	ddb1	99	91.519	MGP_SPRETEiJ_G0023609	Ddb1	94	91.519	Mus_spretus
ENSCVAG00000019531	ddb1	99	88.257	ENSMPUG00000014200	DDB1	94	88.257	Mustela_putorius_furo
ENSCVAG00000019531	ddb1	99	91.519	ENSMLUG00000013232	DDB1	94	91.519	Myotis_lucifugus
ENSCVAG00000019531	ddb1	99	91.333	ENSNGAG00000009384	Ddb1	94	91.333	Nannospalax_galili
ENSCVAG00000019531	ddb1	99	97.670	ENSNBRG00000019581	ddb1	94	97.670	Neolamprologus_brichardi
ENSCVAG00000019531	ddb1	99	88.807	ENSNLEG00000002022	DDB1	94	88.807	Nomascus_leucogenys
ENSCVAG00000019531	ddb1	89	95.853	ENSMEUG00000001099	DDB1	87	95.853	Notamacropus_eugenii
ENSCVAG00000019531	ddb1	89	82.158	ENSOPRG00000008254	DDB1	85	82.158	Ochotona_princeps
ENSCVAG00000019531	ddb1	99	91.333	ENSODEG00000002419	DDB1	94	91.333	Octodon_degus
ENSCVAG00000019531	ddb1	99	97.670	ENSONIG00000005804	ddb1	94	97.670	Oreochromis_niloticus
ENSCVAG00000019531	ddb1	89	90.881	ENSOANG00000004897	DDB1	94	90.881	Ornithorhynchus_anatinus
ENSCVAG00000019531	ddb1	99	91.426	ENSOCUG00000001667	DDB1	94	91.426	Oryctolagus_cuniculus
ENSCVAG00000019531	ddb1	99	97.486	ENSORLG00000001399	ddb1	98	97.406	Oryzias_latipes
ENSCVAG00000019531	ddb1	99	97.393	ENSORLG00020001277	ddb1	95	97.393	Oryzias_latipes_hni
ENSCVAG00000019531	ddb1	99	97.486	ENSORLG00015002080	ddb1	99	97.486	Oryzias_latipes_hsok
ENSCVAG00000019531	ddb1	99	97.581	ENSOMEG00000006181	ddb1	97	97.581	Oryzias_melastigma
ENSCVAG00000019531	ddb1	99	91.519	ENSOGAG00000016103	DDB1	94	91.519	Otolemur_garnettii
ENSCVAG00000019531	ddb1	99	91.333	ENSOARG00000011716	DDB1	93	91.333	Ovis_aries
ENSCVAG00000019531	ddb1	99	91.333	ENSPPAG00000035343	DDB1	94	91.333	Pan_paniscus
ENSCVAG00000019531	ddb1	99	91.426	ENSPPRG00000013300	DDB1	94	91.426	Panthera_pardus
ENSCVAG00000019531	ddb1	97	91.445	ENSPTIG00000006909	DDB1	92	91.445	Panthera_tigris_altaica
ENSCVAG00000019531	ddb1	99	91.333	ENSPTRG00000003737	DDB1	94	91.333	Pan_troglodytes
ENSCVAG00000019531	ddb1	99	91.333	ENSPANG00000000242	DDB1	94	91.333	Papio_anubis
ENSCVAG00000019531	ddb1	99	95.442	ENSPKIG00000019213	ddb1	94	95.442	Paramormyrops_kingsleyae
ENSCVAG00000019531	ddb1	98	90.350	ENSPSIG00000013275	DDB1	94	90.350	Pelodiscus_sinensis
ENSCVAG00000019531	ddb1	91	97.755	ENSPMGG00000021179	ddb1	99	97.755	Periophthalmus_magnuspinnatus
ENSCVAG00000019531	ddb1	99	91.426	ENSPEMG00000012241	Ddb1	94	91.426	Peromyscus_maniculatus_bairdii
ENSCVAG00000019531	ddb1	94	86.640	ENSPMAG00000008479	ddb1	100	86.640	Petromyzon_marinus
ENSCVAG00000019531	ddb1	99	91.519	ENSPCIG00000002643	DDB1	94	91.519	Phascolarctos_cinereus
ENSCVAG00000019531	ddb1	99	98.786	ENSPFOG00000002768	ddb1	94	98.786	Poecilia_formosa
ENSCVAG00000019531	ddb1	99	98.790	ENSPLAG00000017227	ddb1	98	98.790	Poecilia_latipinna
ENSCVAG00000019531	ddb1	99	98.790	ENSPMEG00000011398	ddb1	98	98.790	Poecilia_mexicana
ENSCVAG00000019531	ddb1	99	98.790	ENSPREG00000004440	ddb1	97	98.790	Poecilia_reticulata
ENSCVAG00000019531	ddb1	99	87.640	ENSPPYG00000003193	DDB1	93	87.640	Pongo_abelii
ENSCVAG00000019531	ddb1	83	89.055	ENSPCAG00000011040	DDB1	79	89.055	Procavia_capensis
ENSCVAG00000019531	ddb1	99	90.977	ENSPCOG00000015176	DDB1	94	90.977	Propithecus_coquereli
ENSCVAG00000019531	ddb1	99	91.240	ENSPVAG00000003847	DDB1	94	91.240	Pteropus_vampyrus
ENSCVAG00000019531	ddb1	99	95.632	ENSPNAG00000006635	ddb1	97	95.632	Pygocentrus_nattereri
ENSCVAG00000019531	ddb1	99	91.519	ENSRNOG00000020715	Ddb1	94	91.519	Rattus_norvegicus
ENSCVAG00000019531	ddb1	58	30.065	ENSRBIG00000044907	CPSF1	56	30.065	Rhinopithecus_bieti
ENSCVAG00000019531	ddb1	99	91.333	ENSRBIG00000033611	DDB1	95	91.333	Rhinopithecus_bieti
ENSCVAG00000019531	ddb1	99	91.333	ENSRROG00000041407	DDB1	94	91.333	Rhinopithecus_roxellana
ENSCVAG00000019531	ddb1	58	30.065	ENSRROG00000044861	CPSF1	56	30.065	Rhinopithecus_roxellana
ENSCVAG00000019531	ddb1	99	91.426	ENSSBOG00000019775	DDB1	94	91.426	Saimiri_boliviensis_boliviensis
ENSCVAG00000019531	ddb1	93	89.033	ENSSHAG00000011600	DDB1	94	89.033	Sarcophilus_harrisii
ENSCVAG00000019531	ddb1	99	95.640	ENSSFOG00015011151	ddb1	97	95.640	Scleropages_formosus
ENSCVAG00000019531	ddb1	99	97.297	ENSSMAG00000009495	ddb1	94	97.297	Scophthalmus_maximus
ENSCVAG00000019531	ddb1	99	97.856	ENSSDUG00000004642	ddb1	94	97.856	Seriola_dumerili
ENSCVAG00000019531	ddb1	99	97.856	ENSSLDG00000015804	ddb1	94	97.856	Seriola_lalandi_dorsalis
ENSCVAG00000019531	ddb1	72	92.453	ENSSARG00000003290	-	71	92.453	Sorex_araneus
ENSCVAG00000019531	ddb1	99	90.867	ENSSPUG00000019338	DDB1	94	90.867	Sphenodon_punctatus
ENSCVAG00000019531	ddb1	99	97.858	ENSSPAG00000009888	ddb1	99	97.858	Stegastes_partitus
ENSCVAG00000019531	ddb1	99	91.020	ENSSSCG00000013094	DDB1	94	91.020	Sus_scrofa
ENSCVAG00000019531	ddb1	99	91.182	ENSTGUG00000006414	DDB1	94	91.182	Taeniopygia_guttata
ENSCVAG00000019531	ddb1	99	96.108	ENSTRUG00000016682	ddb1	99	96.108	Takifugu_rubripes
ENSCVAG00000019531	ddb1	86	91.016	ENSTNIG00000009565	ddb1	93	91.016	Tetraodon_nigroviridis
ENSCVAG00000019531	ddb1	91	85.265	ENSTTRG00000011055	DDB1	88	85.265	Tursiops_truncatus
ENSCVAG00000019531	ddb1	99	91.620	ENSUAMG00000017793	DDB1	93	91.620	Ursus_americanus
ENSCVAG00000019531	ddb1	99	91.620	ENSUMAG00000011788	DDB1	98	91.620	Ursus_maritimus
ENSCVAG00000019531	ddb1	89	86.566	ENSVPAG00000007963	DDB1	86	86.566	Vicugna_pacos
ENSCVAG00000019531	ddb1	99	91.426	ENSVVUG00000004987	DDB1	94	91.426	Vulpes_vulpes
ENSCVAG00000019531	ddb1	99	88.579	ENSXETG00000008820	ddb1	94	88.579	Xenopus_tropicalis
ENSCVAG00000019531	ddb1	91	98.571	ENSXCOG00000013956	ddb1	99	98.571	Xiphophorus_couchianus
ENSCVAG00000019531	ddb1	99	98.517	ENSXMAG00000000022	ddb1	99	98.517	Xiphophorus_maculatus