EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000019538 (Gene tree)
Gene ID: 107101096
Gene Symbol: sfpq
Alias: hm:zeh0027|wis|wu:fa11h12|wu:fd10f03|zgc:85935
Full Name: paraspeckle component 1-like
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 30162 bases
Position: chrKL653553.1:13632-43793
Accession: 107101096
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000016547	RRM_1	PF00076.22	3.2e-32	1	2
ENSCVAP00000016547	RRM_1	PF00076.22	3.2e-32	2	2
ENSCVAP00000016569	RRM_1	PF00076.22	4.5e-32	1	2
ENSCVAP00000016569	RRM_1	PF00076.22	4.5e-32	2	2
ENSCVAP00000016567	RRM_1	PF00076.22	4.9e-32	1	2
ENSCVAP00000016567	RRM_1	PF00076.22	4.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000031974	-	3050	XM_015399859	ENSCVAP00000016569	715 (aa)	XP_015255345	UPI0007426266
ENSCVAT00000031969	-	1893	-	ENSCVAP00000016547	630 (aa)	-	-
ENSCVAT00000024980	-	7287	XM_015399858	ENSCVAP00000016567	743 (aa)	XP_015255344	UPI0007425004

Gene Model

Click here to download ENSCVAG00000019538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000019538's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000019538	sfpq	54	60.947	ENSCVAG00000007679	-	86	52.980

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000019538	sfpq	64	66.901	ENSG00000116560	SFPQ	97	68.203	Homo_sapiens
ENSCVAG00000019538	sfpq	96	76.136	ENSAPOG00000024257	sfpq	100	65.503	Acanthochromis_polyacanthus
ENSCVAG00000019538	sfpq	64	66.901	ENSAMEG00000000815	SFPQ	99	68.445	Ailuropoda_melanoleuca
ENSCVAG00000019538	sfpq	100	70.384	ENSACIG00000000905	sfpq	97	81.687	Amphilophus_citrinellus
ENSCVAG00000019538	sfpq	73	70.316	ENSAOCG00000002889	sfpq	100	67.426	Amphiprion_ocellaris
ENSCVAG00000019538	sfpq	73	70.316	ENSAPEG00000016556	sfpq	100	67.426	Amphiprion_percula
ENSCVAG00000019538	sfpq	92	76.171	ENSATEG00000002981	sfpq	100	67.791	Anabas_testudineus
ENSCVAG00000019538	sfpq	61	59.057	ENSANAG00000027438	-	87	49.429	Aotus_nancymaae
ENSCVAG00000019538	sfpq	50	49.853	ENSANAG00000037798	-	96	54.412	Aotus_nancymaae
ENSCVAG00000019538	sfpq	100	66.711	ENSACLG00000022332	sfpq	100	66.222	Astatotilapia_calliptera
ENSCVAG00000019538	sfpq	73	66.460	ENSAMXG00000011538	sfpq	97	53.258	Astyanax_mexicanus
ENSCVAG00000019538	sfpq	64	66.901	ENSBTAG00000016328	SFPQ	60	70.023	Bos_taurus
ENSCVAG00000019538	sfpq	64	66.901	ENSCJAG00000001431	SFPQ	60	70.023	Callithrix_jacchus
ENSCVAG00000019538	sfpq	64	64.319	ENSCAFG00000018271	-	64	67.213	Canis_familiaris
ENSCVAG00000019538	sfpq	64	61.412	ENSCAFG00000017608	-	63	65.728	Canis_familiaris
ENSCVAG00000019538	sfpq	64	66.901	ENSCAFG00000003595	-	65	70.023	Canis_familiaris
ENSCVAG00000019538	sfpq	64	64.319	ENSCAFG00020004881	-	90	55.281	Canis_lupus_dingo
ENSCVAG00000019538	sfpq	52	63.422	ENSCAFG00020010702	-	100	65.130	Canis_lupus_dingo
ENSCVAG00000019538	sfpq	64	66.901	ENSCHIG00000023097	SFPQ	60	70.023	Capra_hircus
ENSCVAG00000019538	sfpq	51	54.701	ENSTSYG00000035106	-	98	59.770	Carlito_syrichta
ENSCVAG00000019538	sfpq	52	64.387	ENSTSYG00000037120	-	100	68.182	Carlito_syrichta
ENSCVAG00000019538	sfpq	52	55.493	ENSCPOG00000015018	-	100	61.157	Cavia_porcellus
ENSCVAG00000019538	sfpq	64	66.981	ENSCCAG00000029361	-	60	70.023	Cebus_capucinus
ENSCVAG00000019538	sfpq	51	76.615	ENSCATG00000036179	-	53	71.074	Cercocebus_atys
ENSCVAG00000019538	sfpq	51	51.360	ENSCATG00000032664	-	59	47.344	Cercocebus_atys
ENSCVAG00000019538	sfpq	52	64.387	ENSCLAG00000009583	-	100	68.182	Chinchilla_lanigera
ENSCVAG00000019538	sfpq	64	66.901	ENSCSAG00000001082	SFPQ	60	70.023	Chlorocebus_sabaeus
ENSCVAG00000019538	sfpq	57	65.526	ENSCHOG00000009131	SFPQ	100	67.717	Choloepus_hoffmanni
ENSCVAG00000019538	sfpq	64	65.581	ENSCPBG00000018674	SFPQ	86	57.095	Chrysemys_picta_bellii
ENSCVAG00000019538	sfpq	52	64.387	ENSCANG00000028087	-	100	68.182	Colobus_angolensis_palliatus
ENSCVAG00000019538	sfpq	64	67.371	ENSCGRG00001011698	Sfpq	89	56.439	Cricetulus_griseus_chok1gshd
ENSCVAG00000019538	sfpq	64	67.371	ENSCGRG00000010128	Sfpq	94	70.023	Cricetulus_griseus_crigri
ENSCVAG00000019538	sfpq	100	69.801	ENSCSEG00000007852	sfpq	100	58.832	Cynoglossus_semilaevis
ENSCVAG00000019538	sfpq	92	57.492	ENSDARG00000011564	sfpq	100	75.652	Danio_rerio
ENSCVAG00000019538	sfpq	64	66.901	ENSDNOG00000049454	SFPQ	60	70.023	Dasypus_novemcinctus
ENSCVAG00000019538	sfpq	64	66.901	ENSDORG00000008109	Sfpq	61	70.023	Dipodomys_ordii
ENSCVAG00000019538	sfpq	64	60.563	ENSETEG00000001095	SFPQ	60	60.532	Echinops_telfairi
ENSCVAG00000019538	sfpq	64	66.901	ENSEASG00005012012	SFPQ	60	70.023	Equus_asinus_asinus
ENSCVAG00000019538	sfpq	64	66.901	ENSECAG00000000642	SFPQ	60	70.023	Equus_caballus
ENSCVAG00000019538	sfpq	68	69.954	ENSELUG00000023145	sfpq	99	55.976	Esox_lucius
ENSCVAG00000019538	sfpq	64	66.901	ENSFCAG00000042862	SFPQ	61	70.023	Felis_catus
ENSCVAG00000019538	sfpq	52	65.812	ENSFALG00000000731	SFPQ	100	68.182	Ficedula_albicollis
ENSCVAG00000019538	sfpq	52	53.951	ENSFDAG00000017723	-	100	62.040	Fukomys_damarensis
ENSCVAG00000019538	sfpq	100	73.514	ENSFHEG00000015200	sfpq	100	75.296	Fundulus_heteroclitus
ENSCVAG00000019538	sfpq	97	60.535	ENSGMOG00000011950	SFPQ	99	78.520	Gadus_morhua
ENSCVAG00000019538	sfpq	93	59.516	ENSGMOG00000011957	sfpq	88	76.457	Gadus_morhua
ENSCVAG00000019538	sfpq	64	68.075	ENSGALG00000002514	SFPQ	91	55.215	Gallus_gallus
ENSCVAG00000019538	sfpq	100	72.959	ENSGAFG00000014571	sfpq	96	83.957	Gambusia_affinis
ENSCVAG00000019538	sfpq	95	73.511	ENSGACG00000002034	sfpq	100	65.714	Gasterosteus_aculeatus
ENSCVAG00000019538	sfpq	68	60.288	ENSGGOG00000026354	SFPQ	100	68.182	Gorilla_gorilla
ENSCVAG00000019538	sfpq	100	66.578	ENSHBUG00000016818	sfpq	100	66.355	Haplochromis_burtoni
ENSCVAG00000019538	sfpq	64	66.200	ENSHGLG00000012001	SFPQ	82	56.240	Heterocephalus_glaber_female
ENSCVAG00000019538	sfpq	52	64.387	ENSHGLG00100004136	-	100	68.182	Heterocephalus_glaber_male
ENSCVAG00000019538	sfpq	87	74.390	ENSHCOG00000008612	sfpq	96	71.325	Hippocampus_comes
ENSCVAG00000019538	sfpq	71	66.739	ENSIPUG00000013076	SFPQ	99	56.465	Ictalurus_punctatus
ENSCVAG00000019538	sfpq	52	64.387	ENSSTOG00000014004	-	100	68.182	Ictidomys_tridecemlineatus
ENSCVAG00000019538	sfpq	64	66.901	ENSJJAG00000015633	Sfpq	60	70.023	Jaculus_jaculus
ENSCVAG00000019538	sfpq	98	70.238	ENSKMAG00000000238	sfpq	87	70.757	Kryptolebias_marmoratus
ENSCVAG00000019538	sfpq	98	57.726	ENSLBEG00000003163	sfpq	98	59.533	Labrus_bergylta
ENSCVAG00000019538	sfpq	64	66.981	ENSLACG00000014728	SFPQ	76	67.377	Latimeria_chalumnae
ENSCVAG00000019538	sfpq	80	61.220	ENSLOCG00000001067	sfpq	70	74.747	Lepisosteus_oculatus
ENSCVAG00000019538	sfpq	64	67.606	ENSLAFG00000015951	SFPQ	94	56.381	Loxodonta_africana
ENSCVAG00000019538	sfpq	64	66.901	ENSMFAG00000000797	SFPQ	60	70.023	Macaca_fascicularis
ENSCVAG00000019538	sfpq	64	66.901	ENSMMUG00000019154	SFPQ	87	55.205	Macaca_mulatta
ENSCVAG00000019538	sfpq	64	66.901	ENSMNEG00000038895	SFPQ	60	70.023	Macaca_nemestrina
ENSCVAG00000019538	sfpq	52	61.823	ENSMLEG00000010643	-	100	65.625	Mandrillus_leucophaeus
ENSCVAG00000019538	sfpq	97	70.750	ENSMAMG00000007875	sfpq	100	68.446	Mastacembelus_armatus
ENSCVAG00000019538	sfpq	100	65.775	ENSMZEG00005026091	sfpq	100	65.293	Maylandia_zebra
ENSCVAG00000019538	sfpq	57	63.427	ENSMGAG00000004237	SFPQ	100	66.582	Meleagris_gallopavo
ENSCVAG00000019538	sfpq	64	67.371	ENSMAUG00000006402	Sfpq	89	52.366	Mesocricetus_auratus
ENSCVAG00000019538	sfpq	64	66.901	ENSMICG00000027265	SFPQ	60	70.023	Microcebus_murinus
ENSCVAG00000019538	sfpq	64	64.789	ENSMOCG00000019075	Sfpq	88	67.447	Microtus_ochrogaster
ENSCVAG00000019538	sfpq	98	69.340	ENSMMOG00000001074	sfpq	100	67.496	Mola_mola
ENSCVAG00000019538	sfpq	64	68.235	ENSMODG00000017937	SFPQ	63	70.423	Monodelphis_domestica
ENSCVAG00000019538	sfpq	100	71.375	ENSMALG00000010381	sfpq	99	81.675	Monopterus_albus
ENSCVAG00000019538	sfpq	64	67.371	MGP_CAROLIEiJ_G0026487	Sfpq	61	70.023	Mus_caroli
ENSCVAG00000019538	sfpq	64	67.371	ENSMUSG00000028820	Sfpq	61	70.023	Mus_musculus
ENSCVAG00000019538	sfpq	64	67.371	MGP_PahariEiJ_G0028818	Sfpq	61	70.023	Mus_pahari
ENSCVAG00000019538	sfpq	64	67.371	MGP_SPRETEiJ_G0027466	Sfpq	61	70.023	Mus_spretus
ENSCVAG00000019538	sfpq	64	67.442	ENSMLUG00000027090	SFPQ	95	70.023	Myotis_lucifugus
ENSCVAG00000019538	sfpq	64	66.667	ENSNGAG00000000888	Sfpq	60	69.789	Nannospalax_galili
ENSCVAG00000019538	sfpq	100	66.043	ENSNBRG00000017479	sfpq	100	65.733	Neolamprologus_brichardi
ENSCVAG00000019538	sfpq	52	64.387	ENSNLEG00000035521	-	100	68.182	Nomascus_leucogenys
ENSCVAG00000019538	sfpq	64	67.376	ENSMEUG00000014082	SFPQ	61	71.059	Notamacropus_eugenii
ENSCVAG00000019538	sfpq	64	66.901	ENSOPRG00000013696	SFPQ	60	70.023	Ochotona_princeps
ENSCVAG00000019538	sfpq	62	59.662	ENSODEG00000005485	SFPQ	74	61.765	Octodon_degus
ENSCVAG00000019538	sfpq	100	65.775	ENSONIG00000017737	sfpq	99	65.554	Oreochromis_niloticus
ENSCVAG00000019538	sfpq	52	65.714	ENSOANG00000008789	-	100	68.661	Ornithorhynchus_anatinus
ENSCVAG00000019538	sfpq	64	66.901	ENSOCUG00000001877	SFPQ	84	70.023	Oryctolagus_cuniculus
ENSCVAG00000019538	sfpq	100	66.358	ENSORLG00000007459	sfpq	100	67.503	Oryzias_latipes
ENSCVAG00000019538	sfpq	100	65.621	ENSORLG00020011818	sfpq	100	67.194	Oryzias_latipes_hni
ENSCVAG00000019538	sfpq	100	66.623	ENSORLG00015002131	sfpq	100	67.368	Oryzias_latipes_hsok
ENSCVAG00000019538	sfpq	100	67.230	ENSOMEG00000018020	sfpq	100	67.017	Oryzias_melastigma
ENSCVAG00000019538	sfpq	64	66.667	ENSOGAG00000027710	SFPQ	81	70.023	Otolemur_garnettii
ENSCVAG00000019538	sfpq	64	66.901	ENSOARG00000019439	SFPQ	65	70.258	Ovis_aries
ENSCVAG00000019538	sfpq	64	66.901	ENSPPAG00000030078	SFPQ	60	70.023	Pan_paniscus
ENSCVAG00000019538	sfpq	52	63.920	ENSPPRG00000015478	-	100	67.989	Panthera_pardus
ENSCVAG00000019538	sfpq	52	64.387	ENSPTIG00000007710	-	100	68.182	Panthera_tigris_altaica
ENSCVAG00000019538	sfpq	64	61.268	ENSPTRG00000000518	SFPQ	58	64.403	Pan_troglodytes
ENSCVAG00000019538	sfpq	64	66.901	ENSPANG00000005380	SFPQ	63	70.023	Papio_anubis
ENSCVAG00000019538	sfpq	75	64.919	ENSPKIG00000023035	sfpq	94	62.671	Paramormyrops_kingsleyae
ENSCVAG00000019538	sfpq	64	66.279	ENSPSIG00000011494	SFPQ	99	70.023	Pelodiscus_sinensis
ENSCVAG00000019538	sfpq	83	78.670	ENSPMGG00000023883	sfpq	100	63.108	Periophthalmus_magnuspinnatus
ENSCVAG00000019538	sfpq	64	67.371	ENSPEMG00000009794	Sfpq	88	70.023	Peromyscus_maniculatus_bairdii
ENSCVAG00000019538	sfpq	50	70.440	ENSPMAG00000005583	sfpq	99	56.600	Petromyzon_marinus
ENSCVAG00000019538	sfpq	64	67.217	ENSPCIG00000000923	SFPQ	61	70.892	Phascolarctos_cinereus
ENSCVAG00000019538	sfpq	100	77.732	ENSPFOG00000003127	sfpq	100	76.763	Poecilia_formosa
ENSCVAG00000019538	sfpq	100	74.431	ENSPREG00000008060	sfpq	100	73.698	Poecilia_reticulata
ENSCVAG00000019538	sfpq	64	66.901	ENSPPYG00000001560	SFPQ	60	70.023	Pongo_abelii
ENSCVAG00000019538	sfpq	64	66.434	ENSPCAG00000006164	SFPQ	60	69.535	Procavia_capensis
ENSCVAG00000019538	sfpq	64	66.901	ENSPCOG00000027127	SFPQ	60	70.023	Propithecus_coquereli
ENSCVAG00000019538	sfpq	64	65.176	ENSPVAG00000001865	SFPQ	61	68.235	Pteropus_vampyrus
ENSCVAG00000019538	sfpq	100	67.246	ENSPNYG00000007494	sfpq	100	66.933	Pundamilia_nyererei
ENSCVAG00000019538	sfpq	74	67.076	ENSPNAG00000002128	sfpq	95	58.592	Pygocentrus_nattereri
ENSCVAG00000019538	sfpq	64	67.371	ENSRNOG00000058461	Sfpq	61	70.023	Rattus_norvegicus
ENSCVAG00000019538	sfpq	63	61.702	ENSRBIG00000035286	SFPQ	100	68.182	Rhinopithecus_bieti
ENSCVAG00000019538	sfpq	55	70.726	ENSRROG00000040992	SFPQ	100	68.182	Rhinopithecus_roxellana
ENSCVAG00000019538	sfpq	52	64.387	ENSSBOG00000024972	-	100	68.182	Saimiri_boliviensis_boliviensis
ENSCVAG00000019538	sfpq	64	63.920	ENSSHAG00000016107	-	95	67.568	Sarcophilus_harrisii
ENSCVAG00000019538	sfpq	52	62.931	ENSSHAG00000012312	-	100	66.571	Sarcophilus_harrisii
ENSCVAG00000019538	sfpq	80	63.391	ENSSFOG00015009289	sfpq	80	76.888	Scleropages_formosus
ENSCVAG00000019538	sfpq	88	75.589	ENSSMAG00000018201	sfpq	100	65.403	Scophthalmus_maximus
ENSCVAG00000019538	sfpq	93	76.740	ENSSDUG00000008402	sfpq	100	68.971	Seriola_dumerili
ENSCVAG00000019538	sfpq	94	76.000	ENSSLDG00000018917	sfpq	100	69.192	Seriola_lalandi_dorsalis
ENSCVAG00000019538	sfpq	55	65.489	ENSSARG00000006409	SFPQ	100	69.106	Sorex_araneus
ENSCVAG00000019538	sfpq	98	64.179	ENSSPAG00000016550	sfpq	100	66.369	Stegastes_partitus
ENSCVAG00000019538	sfpq	64	66.901	ENSSSCG00000035690	SFPQ	90	51.912	Sus_scrofa
ENSCVAG00000019538	sfpq	64	68.310	ENSTGUG00000001722	SFPQ	99	70.258	Taeniopygia_guttata
ENSCVAG00000019538	sfpq	100	64.533	ENSTRUG00000003783	sfpq	100	63.200	Takifugu_rubripes
ENSCVAG00000019538	sfpq	80	70.736	ENSTNIG00000011331	sfpq	99	63.319	Tetraodon_nigroviridis
ENSCVAG00000019538	sfpq	64	66.667	ENSTTRG00000013930	SFPQ	61	68.310	Tursiops_truncatus
ENSCVAG00000019538	sfpq	52	62.393	ENSUMAG00000008056	-	100	66.193	Ursus_maritimus
ENSCVAG00000019538	sfpq	64	64.186	ENSXETG00000009682	sfpq	98	73.596	Xenopus_tropicalis
ENSCVAG00000019538	sfpq	100	75.209	ENSXMAG00000016391	sfpq	100	74.513	Xiphophorus_maculatus