EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000019829 (Gene tree)
Gene ID: 107095412
Gene Symbol: snrnp48
Alias: fd10a06|wu:fd10a06
Full Name: small nuclear ribonucleoprotein U11/U12 subunit 48
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 9187 bases
Position: chrKL652500.1:1760020-1769206
Accession: 107095412
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000016817	zf-U11-48K	PF05253.12	1.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000032061	-	1414	XM_015391901	ENSCVAP00000016817	387 (aa)	XP_015247387	UPI0007426B9E

Gene Model

Click here to download ENSCVAG00000019829's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000019829's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000019829	snrnp48	73	46.875	ENSG00000168566	SNRNP48	89	46.006	Homo_sapiens
ENSCVAG00000019829	snrnp48	73	78.799	ENSAPOG00000021430	snrnp48	93	75.710	Acanthochromis_polyacanthus
ENSCVAG00000019829	snrnp48	79	44.904	ENSAMEG00000017349	SNRNP48	90	44.904	Ailuropoda_melanoleuca
ENSCVAG00000019829	snrnp48	77	72.910	ENSACIG00000002032	snrnp48	92	71.019	Amphilophus_citrinellus
ENSCVAG00000019829	snrnp48	84	72.036	ENSAOCG00000010562	snrnp48	99	70.710	Amphiprion_ocellaris
ENSCVAG00000019829	snrnp48	84	72.340	ENSAPEG00000003231	snrnp48	99	71.006	Amphiprion_percula
ENSCVAG00000019829	snrnp48	73	79.505	ENSATEG00000020210	snrnp48	99	72.917	Anabas_testudineus
ENSCVAG00000019829	snrnp48	76	48.185	ENSACAG00000002811	SNRNP48	85	50.542	Anolis_carolinensis
ENSCVAG00000019829	snrnp48	73	47.222	ENSANAG00000033538	SNRNP48	89	46.326	Aotus_nancymaae
ENSCVAG00000019829	snrnp48	79	57.143	ENSAMXG00000015309	snrnp48	89	55.556	Astyanax_mexicanus
ENSCVAG00000019829	snrnp48	74	46.959	ENSBTAG00000001123	SNRNP48	93	45.482	Bos_taurus
ENSCVAG00000019829	snrnp48	73	47.222	ENSCJAG00000021330	SNRNP48	88	46.580	Callithrix_jacchus
ENSCVAG00000019829	snrnp48	89	41.311	ENSCAFG00000009574	SNRNP48	81	41.983	Canis_familiaris
ENSCVAG00000019829	snrnp48	90	41.737	ENSCAFG00020013203	SNRNP48	97	42.274	Canis_lupus_dingo
ENSCVAG00000019829	snrnp48	74	47.297	ENSCHIG00000015216	SNRNP48	94	45.672	Capra_hircus
ENSCVAG00000019829	snrnp48	74	47.279	ENSTSYG00000000698	SNRNP48	89	45.367	Carlito_syrichta
ENSCVAG00000019829	snrnp48	81	44.375	ENSCAPG00000006768	SNRNP48	95	47.000	Cavia_aperea
ENSCVAG00000019829	snrnp48	82	44.248	ENSCPOG00000007910	SNRNP48	95	46.667	Cavia_porcellus
ENSCVAG00000019829	snrnp48	73	47.222	ENSCCAG00000035652	SNRNP48	89	46.326	Cebus_capucinus
ENSCVAG00000019829	snrnp48	78	45.928	ENSCATG00000033947	SNRNP48	89	46.006	Cercocebus_atys
ENSCVAG00000019829	snrnp48	62	51.822	ENSCLAG00000003765	SNRNP48	89	46.645	Chinchilla_lanigera
ENSCVAG00000019829	snrnp48	73	47.569	ENSCSAG00000007409	SNRNP48	89	46.326	Chlorocebus_sabaeus
ENSCVAG00000019829	snrnp48	79	45.253	ENSCPBG00000019146	SNRNP48	86	47.464	Chrysemys_picta_bellii
ENSCVAG00000019829	snrnp48	73	47.222	ENSCANG00000030017	SNRNP48	89	46.326	Colobus_angolensis_palliatus
ENSCVAG00000019829	snrnp48	67	48.302	ENSCGRG00001001076	-	95	43.976	Cricetulus_griseus_chok1gshd
ENSCVAG00000019829	snrnp48	71	40.141	ENSCGRG00001008805	-	89	40.141	Cricetulus_griseus_chok1gshd
ENSCVAG00000019829	snrnp48	67	48.302	ENSCGRG00000007781	Snrnp48	95	43.976	Cricetulus_griseus_crigri
ENSCVAG00000019829	snrnp48	67	70.769	ENSCSEG00000000722	snrnp48	89	64.353	Cynoglossus_semilaevis
ENSCVAG00000019829	snrnp48	71	56.318	ENSDARG00000039989	snrnp48	93	48.760	Danio_rerio
ENSCVAG00000019829	snrnp48	93	41.417	ENSDNOG00000014978	SNRNP48	93	44.785	Dasypus_novemcinctus
ENSCVAG00000019829	snrnp48	62	49.194	ENSDORG00000015140	Snrnp48	88	44.805	Dipodomys_ordii
ENSCVAG00000019829	snrnp48	73	45.517	ENSEASG00005012021	SNRNP48	88	44.660	Equus_asinus_asinus
ENSCVAG00000019829	snrnp48	73	45.862	ENSECAG00000026937	SNRNP48	88	44.984	Equus_caballus
ENSCVAG00000019829	snrnp48	82	58.879	ENSELUG00000009766	snrnp48	98	52.030	Esox_lucius
ENSCVAG00000019829	snrnp48	65	47.876	ENSFCAG00000018853	SNRNP48	89	44.728	Felis_catus
ENSCVAG00000019829	snrnp48	64	52.174	ENSFALG00000007797	SNRNP48	86	51.838	Ficedula_albicollis
ENSCVAG00000019829	snrnp48	73	47.917	ENSFDAG00000009231	SNRNP48	95	45.152	Fukomys_damarensis
ENSCVAG00000019829	snrnp48	57	89.238	ENSFHEG00000014647	snrnp48	88	78.049	Fundulus_heteroclitus
ENSCVAG00000019829	snrnp48	80	62.739	ENSGMOG00000018599	-	97	63.462	Gadus_morhua
ENSCVAG00000019829	snrnp48	68	51.111	ENSGALG00000013005	SNRNP48	90	51.301	Gallus_gallus
ENSCVAG00000019829	snrnp48	72	84.173	ENSGAFG00000021639	snrnp48	92	81.470	Gambusia_affinis
ENSCVAG00000019829	snrnp48	64	77.600	ENSGACG00000017756	-	91	62.899	Gasterosteus_aculeatus
ENSCVAG00000019829	snrnp48	81	44.444	ENSGAGG00000000865	SNRNP48	92	46.667	Gopherus_agassizii
ENSCVAG00000019829	snrnp48	73	47.222	ENSGGOG00000013220	SNRNP48	89	46.326	Gorilla_gorilla
ENSCVAG00000019829	snrnp48	81	78.662	ENSHBUG00000017066	snrnp48	91	78.662	Haplochromis_burtoni
ENSCVAG00000019829	snrnp48	73	47.569	ENSHGLG00000015241	SNRNP48	88	46.580	Heterocephalus_glaber_female
ENSCVAG00000019829	snrnp48	73	47.569	ENSHGLG00100010027	SNRNP48	88	46.580	Heterocephalus_glaber_male
ENSCVAG00000019829	snrnp48	65	73.622	ENSHCOG00000014066	snrnp48	95	64.832	Hippocampus_comes
ENSCVAG00000019829	snrnp48	70	48.913	ENSSTOG00000014635	SNRNP48	88	46.580	Ictidomys_tridecemlineatus
ENSCVAG00000019829	snrnp48	67	49.057	ENSJJAG00000011495	Snrnp48	89	46.326	Jaculus_jaculus
ENSCVAG00000019829	snrnp48	89	69.164	ENSKMAG00000016514	snrnp48	92	77.603	Kryptolebias_marmoratus
ENSCVAG00000019829	snrnp48	72	75.540	ENSLBEG00000026249	snrnp48	94	72.727	Labrus_bergylta
ENSCVAG00000019829	snrnp48	83	47.147	ENSLACG00000003958	SNRNP48	96	48.943	Latimeria_chalumnae
ENSCVAG00000019829	snrnp48	72	61.348	ENSLOCG00000004187	snrnp48	91	58.521	Lepisosteus_oculatus
ENSCVAG00000019829	snrnp48	65	49.042	ENSLAFG00000011152	SNRNP48	91	45.171	Loxodonta_africana
ENSCVAG00000019829	snrnp48	73	47.222	ENSMFAG00000045216	SNRNP48	89	46.326	Macaca_fascicularis
ENSCVAG00000019829	snrnp48	73	47.222	ENSMMUG00000014785	SNRNP48	89	46.326	Macaca_mulatta
ENSCVAG00000019829	snrnp48	73	47.222	ENSMNEG00000042269	SNRNP48	89	46.326	Macaca_nemestrina
ENSCVAG00000019829	snrnp48	73	47.222	ENSMLEG00000034004	SNRNP48	89	46.326	Mandrillus_leucophaeus
ENSCVAG00000019829	snrnp48	65	77.953	ENSMAMG00000018673	snrnp48	75	70.000	Mastacembelus_armatus
ENSCVAG00000019829	snrnp48	80	47.500	ENSMGAG00000006037	SNRNP48	94	50.890	Meleagris_gallopavo
ENSCVAG00000019829	snrnp48	65	48.077	ENSMAUG00000011944	Snrnp48	95	42.812	Mesocricetus_auratus
ENSCVAG00000019829	snrnp48	70	46.931	ENSMICG00000012497	SNRNP48	89	45.223	Microcebus_murinus
ENSCVAG00000019829	snrnp48	89	41.360	ENSMOCG00000015555	Snrnp48	96	43.149	Microtus_ochrogaster
ENSCVAG00000019829	snrnp48	73	45.608	ENSMODG00000009996	SNRNP48	91	44.214	Monodelphis_domestica
ENSCVAG00000019829	snrnp48	71	76.534	ENSMALG00000005725	snrnp48	93	72.642	Monopterus_albus
ENSCVAG00000019829	snrnp48	66	49.242	MGP_CAROLIEiJ_G0018441	Snrnp48	96	44.910	Mus_caroli
ENSCVAG00000019829	snrnp48	62	50.407	ENSMUSG00000021431	Snrnp48	96	44.611	Mus_musculus
ENSCVAG00000019829	snrnp48	66	49.242	MGP_PahariEiJ_G0019509	Snrnp48	96	44.910	Mus_pahari
ENSCVAG00000019829	snrnp48	66	49.242	MGP_SPRETEiJ_G0019321	Snrnp48	96	45.210	Mus_spretus
ENSCVAG00000019829	snrnp48	67	49.434	ENSNGAG00000004849	Snrnp48	96	45.536	Nannospalax_galili
ENSCVAG00000019829	snrnp48	78	80.795	ENSNBRG00000012127	snrnp48	91	78.662	Neolamprologus_brichardi
ENSCVAG00000019829	snrnp48	73	47.222	ENSNLEG00000011667	SNRNP48	89	46.326	Nomascus_leucogenys
ENSCVAG00000019829	snrnp48	65	50.781	ENSOPRG00000015471	SNRNP48	98	45.652	Ochotona_princeps
ENSCVAG00000019829	snrnp48	81	79.299	ENSONIG00000001520	snrnp48	91	79.299	Oreochromis_niloticus
ENSCVAG00000019829	snrnp48	62	49.194	ENSOCUG00000005168	SNRNP48	99	44.728	Oryctolagus_cuniculus
ENSCVAG00000019829	snrnp48	77	77.852	ENSORLG00000015654	snrnp48	91	75.159	Oryzias_latipes
ENSCVAG00000019829	snrnp48	77	77.852	ENSORLG00020015976	snrnp48	78	75.159	Oryzias_latipes_hni
ENSCVAG00000019829	snrnp48	77	77.852	ENSORLG00015022379	snrnp48	78	75.159	Oryzias_latipes_hsok
ENSCVAG00000019829	snrnp48	81	76.752	ENSOMEG00000022007	snrnp48	91	76.752	Oryzias_melastigma
ENSCVAG00000019829	snrnp48	90	41.389	ENSOGAG00000005275	SNRNP48	90	45.016	Otolemur_garnettii
ENSCVAG00000019829	snrnp48	60	51.695	ENSOARG00000017319	SNRNP48	91	48.889	Ovis_aries
ENSCVAG00000019829	snrnp48	73	47.222	ENSPPAG00000032873	SNRNP48	89	46.326	Pan_paniscus
ENSCVAG00000019829	snrnp48	65	47.876	ENSPPRG00000004283	SNRNP48	89	44.728	Panthera_pardus
ENSCVAG00000019829	snrnp48	52	51.942	ENSPTIG00000013502	SNRNP48	85	47.638	Panthera_tigris_altaica
ENSCVAG00000019829	snrnp48	73	47.222	ENSPTRG00000017703	SNRNP48	89	46.326	Pan_troglodytes
ENSCVAG00000019829	snrnp48	73	47.222	ENSPANG00000000771	SNRNP48	89	46.326	Papio_anubis
ENSCVAG00000019829	snrnp48	90	55.200	ENSPKIG00000013703	snrnp48	76	54.469	Paramormyrops_kingsleyae
ENSCVAG00000019829	snrnp48	79	44.164	ENSPSIG00000002213	SNRNP48	88	45.936	Pelodiscus_sinensis
ENSCVAG00000019829	snrnp48	70	65.357	ENSPMGG00000008120	snrnp48	96	65.357	Periophthalmus_magnuspinnatus
ENSCVAG00000019829	snrnp48	93	42.077	ENSPEMG00000008872	Snrnp48	95	44.880	Peromyscus_maniculatus_bairdii
ENSCVAG00000019829	snrnp48	72	86.331	ENSPFOG00000003578	snrnp48	92	83.387	Poecilia_formosa
ENSCVAG00000019829	snrnp48	70	77.491	ENSPLAG00000002290	snrnp48	97	75.714	Poecilia_latipinna
ENSCVAG00000019829	snrnp48	72	85.971	ENSPMEG00000018033	snrnp48	92	83.067	Poecilia_mexicana
ENSCVAG00000019829	snrnp48	71	84.727	ENSPREG00000018541	snrnp48	92	81.789	Poecilia_reticulata
ENSCVAG00000019829	snrnp48	73	46.528	ENSPPYG00000016209	SNRNP48	89	45.687	Pongo_abelii
ENSCVAG00000019829	snrnp48	62	38.095	ENSPCAG00000011991	SNRNP48	99	39.925	Procavia_capensis
ENSCVAG00000019829	snrnp48	92	41.047	ENSPVAG00000002854	SNRNP48	97	40.720	Pteropus_vampyrus
ENSCVAG00000019829	snrnp48	78	80.795	ENSPNYG00000015399	snrnp48	100	78.730	Pundamilia_nyererei
ENSCVAG00000019829	snrnp48	67	50.566	ENSRNOG00000013756	Snrnp48	95	45.783	Rattus_norvegicus
ENSCVAG00000019829	snrnp48	73	47.222	ENSRBIG00000043856	SNRNP48	95	46.580	Rhinopithecus_bieti
ENSCVAG00000019829	snrnp48	73	47.222	ENSRROG00000043229	SNRNP48	89	46.326	Rhinopithecus_roxellana
ENSCVAG00000019829	snrnp48	73	47.569	ENSSBOG00000019486	SNRNP48	89	46.645	Saimiri_boliviensis_boliviensis
ENSCVAG00000019829	snrnp48	73	45.847	ENSSHAG00000014483	SNRNP48	97	45.455	Sarcophilus_harrisii
ENSCVAG00000019829	snrnp48	64	61.811	ENSSFOG00015006610	snrnp48	85	56.389	Scleropages_formosus
ENSCVAG00000019829	snrnp48	77	77.258	ENSSDUG00000014953	snrnp48	94	73.354	Seriola_dumerili
ENSCVAG00000019829	snrnp48	77	77.592	ENSSLDG00000005989	snrnp48	87	77.441	Seriola_lalandi_dorsalis
ENSCVAG00000019829	snrnp48	79	47.249	ENSSPUG00000006257	SNRNP48	80	47.887	Sphenodon_punctatus
ENSCVAG00000019829	snrnp48	73	79.505	ENSSPAG00000006454	snrnp48	89	71.429	Stegastes_partitus
ENSCVAG00000019829	snrnp48	81	46.130	ENSTGUG00000007575	SNRNP48	92	49.310	Taeniopygia_guttata
ENSCVAG00000019829	snrnp48	66	75.781	ENSTRUG00000007031	snrnp48	91	71.061	Takifugu_rubripes
ENSCVAG00000019829	snrnp48	88	63.663	ENSTNIG00000012977	-	90	67.089	Tetraodon_nigroviridis
ENSCVAG00000019829	snrnp48	62	48.387	ENSTBEG00000015620	SNRNP48	76	47.104	Tupaia_belangeri
ENSCVAG00000019829	snrnp48	89	41.311	ENSTTRG00000016715	SNRNP48	93	44.785	Tursiops_truncatus
ENSCVAG00000019829	snrnp48	78	45.098	ENSUAMG00000003690	SNRNP48	89	44.872	Ursus_americanus
ENSCVAG00000019829	snrnp48	79	43.182	ENSVPAG00000003557	SNRNP48	93	45.139	Vicugna_pacos
ENSCVAG00000019829	snrnp48	90	41.899	ENSVVUG00000004996	SNRNP48	97	42.442	Vulpes_vulpes
ENSCVAG00000019829	snrnp48	77	47.841	ENSXETG00000020447	snrnp48	88	48.013	Xenopus_tropicalis
ENSCVAG00000019829	snrnp48	84	71.605	ENSXCOG00000004478	snrnp48	87	72.468	Xiphophorus_couchianus
ENSCVAG00000019829	snrnp48	72	85.971	ENSXMAG00000013595	snrnp48	92	83.067	Xiphophorus_maculatus