EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000020212 (Gene tree)
Gene ID: 107099298
Gene Symbol: si:ch211-117n7.8
Alias: -
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 68540 bases
Position: chrKL653356.1:10617-79156
Accession: 107099298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000017091	S1	PF00575.23	6.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000025637	-	2796	XM_015397354	ENSCVAP00000017091	931 (aa)	XP_015252840	-

Gene Model

Click here to download ENSCVAG00000020212's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000020212's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000020212	si:ch211-117n7.8	89	56.368	ENSG00000068784	SRBD1	83	56.368	Homo_sapiens
ENSCVAG00000020212	si:ch211-117n7.8	99	76.559	ENSAPOG00000005103	si:ch211-117n7.8	98	76.559	Acanthochromis_polyacanthus
ENSCVAG00000020212	si:ch211-117n7.8	98	54.109	ENSAMEG00000005993	SRBD1	84	57.733	Ailuropoda_melanoleuca
ENSCVAG00000020212	si:ch211-117n7.8	92	83.834	ENSACIG00000009875	si:ch211-117n7.8	88	84.296	Amphilophus_citrinellus
ENSCVAG00000020212	si:ch211-117n7.8	99	75.758	ENSAOCG00000024718	si:ch211-117n7.8	98	75.556	Amphiprion_ocellaris
ENSCVAG00000020212	si:ch211-117n7.8	98	76.639	ENSAPEG00000002645	si:ch211-117n7.8	99	76.230	Amphiprion_percula
ENSCVAG00000020212	si:ch211-117n7.8	99	75.612	ENSATEG00000010844	si:ch211-117n7.8	98	75.380	Anabas_testudineus
ENSCVAG00000020212	si:ch211-117n7.8	92	57.675	ENSAPLG00000006313	SRBD1	87	57.675	Anas_platyrhynchos
ENSCVAG00000020212	si:ch211-117n7.8	90	57.143	ENSANAG00000025573	SRBD1	84	57.143	Aotus_nancymaae
ENSCVAG00000020212	si:ch211-117n7.8	99	77.377	ENSACLG00000024219	si:ch211-117n7.8	91	85.104	Astatotilapia_calliptera
ENSCVAG00000020212	si:ch211-117n7.8	94	67.654	ENSAMXG00000004294	SRBD1	89	67.320	Astyanax_mexicanus
ENSCVAG00000020212	si:ch211-117n7.8	98	53.050	ENSBTAG00000007508	SRBD1	81	57.951	Bos_taurus
ENSCVAG00000020212	si:ch211-117n7.8	89	57.075	ENSCJAG00000000727	SRBD1	84	57.075	Callithrix_jacchus
ENSCVAG00000020212	si:ch211-117n7.8	97	54.585	ENSCAFG00000002554	SRBD1	84	57.394	Canis_familiaris
ENSCVAG00000020212	si:ch211-117n7.8	97	51.836	ENSCAFG00020026284	SRBD1	97	58.654	Canis_lupus_dingo
ENSCVAG00000020212	si:ch211-117n7.8	98	52.609	ENSCHIG00000016535	SRBD1	82	57.833	Capra_hircus
ENSCVAG00000020212	si:ch211-117n7.8	98	54.091	ENSTSYG00000012797	SRBD1	84	57.512	Carlito_syrichta
ENSCVAG00000020212	si:ch211-117n7.8	90	57.801	ENSCPOG00000004773	SRBD1	85	57.801	Cavia_porcellus
ENSCVAG00000020212	si:ch211-117n7.8	98	54.952	ENSCCAG00000025589	SRBD1	84	57.547	Cebus_capucinus
ENSCVAG00000020212	si:ch211-117n7.8	89	56.722	ENSCATG00000039530	SRBD1	84	56.722	Cercocebus_atys
ENSCVAG00000020212	si:ch211-117n7.8	91	58.207	ENSCLAG00000008623	SRBD1	86	58.207	Chinchilla_lanigera
ENSCVAG00000020212	si:ch211-117n7.8	89	56.486	ENSCSAG00000013350	SRBD1	84	56.486	Chlorocebus_sabaeus
ENSCVAG00000020212	si:ch211-117n7.8	76	81.395	ENSCHOG00000003805	SRBD1	69	81.395	Choloepus_hoffmanni
ENSCVAG00000020212	si:ch211-117n7.8	89	58.491	ENSCPBG00000005677	SRBD1	89	57.159	Chrysemys_picta_bellii
ENSCVAG00000020212	si:ch211-117n7.8	84	41.074	ENSCING00000005950	-	99	41.074	Ciona_intestinalis
ENSCVAG00000020212	si:ch211-117n7.8	84	42.803	ENSCSAVG00000000861	-	99	42.803	Ciona_savignyi
ENSCVAG00000020212	si:ch211-117n7.8	89	56.486	ENSCANG00000016307	SRBD1	84	56.486	Colobus_angolensis_palliatus
ENSCVAG00000020212	si:ch211-117n7.8	90	56.975	ENSCGRG00001000513	Srbd1	85	56.975	Cricetulus_griseus_chok1gshd
ENSCVAG00000020212	si:ch211-117n7.8	90	56.975	ENSCGRG00000002283	Srbd1	85	56.975	Cricetulus_griseus_crigri
ENSCVAG00000020212	si:ch211-117n7.8	98	71.811	ENSCSEG00000000856	si:ch211-117n7.8	97	71.355	Cynoglossus_semilaevis
ENSCVAG00000020212	si:ch211-117n7.8	98	52.816	ENSDNOG00000018686	SRBD1	83	56.455	Dasypus_novemcinctus
ENSCVAG00000020212	si:ch211-117n7.8	89	57.432	ENSDORG00000010468	Srbd1	84	57.432	Dipodomys_ordii
ENSCVAG00000020212	si:ch211-117n7.8	84	36.662	FBgn0051156	CG31156	79	36.536	Drosophila_melanogaster
ENSCVAG00000020212	si:ch211-117n7.8	87	57.299	ENSETEG00000000739	SRBD1	77	57.482	Echinops_telfairi
ENSCVAG00000020212	si:ch211-117n7.8	77	47.874	ENSEBUG00000008902	si:ch211-117n7.8	95	47.874	Eptatretus_burgeri
ENSCVAG00000020212	si:ch211-117n7.8	89	55.359	ENSEASG00005003132	SRBD1	98	58.397	Equus_asinus_asinus
ENSCVAG00000020212	si:ch211-117n7.8	89	57.479	ENSECAG00000013865	SRBD1	82	57.479	Equus_caballus
ENSCVAG00000020212	si:ch211-117n7.8	95	68.004	ENSELUG00000012592	si:ch211-117n7.8	90	68.269	Esox_lucius
ENSCVAG00000020212	si:ch211-117n7.8	89	57.597	ENSFCAG00000005101	SRBD1	83	57.597	Felis_catus
ENSCVAG00000020212	si:ch211-117n7.8	94	55.964	ENSFALG00000012966	SRBD1	88	56.236	Ficedula_albicollis
ENSCVAG00000020212	si:ch211-117n7.8	89	58.916	ENSFDAG00000016670	SRBD1	85	58.916	Fukomys_damarensis
ENSCVAG00000020212	si:ch211-117n7.8	99	81.855	ENSFHEG00000019480	si:ch211-117n7.8	98	81.855	Fundulus_heteroclitus
ENSCVAG00000020212	si:ch211-117n7.8	53	72.792	ENSGMOG00000018010	-	100	72.792	Gadus_morhua
ENSCVAG00000020212	si:ch211-117n7.8	93	57.830	ENSGALG00000009990	SRBD1	88	57.830	Gallus_gallus
ENSCVAG00000020212	si:ch211-117n7.8	99	81.828	ENSGAFG00000019664	si:ch211-117n7.8	98	81.327	Gambusia_affinis
ENSCVAG00000020212	si:ch211-117n7.8	66	81.931	ENSGACG00000010794	si:ch211-117n7.8	100	81.931	Gasterosteus_aculeatus
ENSCVAG00000020212	si:ch211-117n7.8	94	55.713	ENSGAGG00000006166	SRBD1	99	58.962	Gopherus_agassizii
ENSCVAG00000020212	si:ch211-117n7.8	89	56.486	ENSGGOG00000005910	SRBD1	86	56.486	Gorilla_gorilla
ENSCVAG00000020212	si:ch211-117n7.8	98	65.128	ENSHBUG00000013207	si:ch211-117n7.8	100	65.128	Haplochromis_burtoni
ENSCVAG00000020212	si:ch211-117n7.8	89	57.938	ENSHGLG00000018153	-	84	57.938	Heterocephalus_glaber_female
ENSCVAG00000020212	si:ch211-117n7.8	89	57.888	ENSHGLG00100015183	-	84	57.888	Heterocephalus_glaber_male
ENSCVAG00000020212	si:ch211-117n7.8	90	70.519	ENSIPUG00000009661	srbd1	85	70.519	Ictalurus_punctatus
ENSCVAG00000020212	si:ch211-117n7.8	89	58.880	ENSSTOG00000005898	SRBD1	84	58.880	Ictidomys_tridecemlineatus
ENSCVAG00000020212	si:ch211-117n7.8	89	54.869	ENSJJAG00000022244	Srbd1	83	54.869	Jaculus_jaculus
ENSCVAG00000020212	si:ch211-117n7.8	99	79.430	ENSKMAG00000003473	si:ch211-117n7.8	98	79.430	Kryptolebias_marmoratus
ENSCVAG00000020212	si:ch211-117n7.8	99	75.553	ENSLBEG00000027518	si:ch211-117n7.8	98	75.050	Labrus_bergylta
ENSCVAG00000020212	si:ch211-117n7.8	90	57.728	ENSLACG00000009790	SRBD1	99	57.728	Latimeria_chalumnae
ENSCVAG00000020212	si:ch211-117n7.8	97	62.928	ENSLOCG00000016360	si:ch211-117n7.8	84	68.913	Lepisosteus_oculatus
ENSCVAG00000020212	si:ch211-117n7.8	89	56.486	ENSMFAG00000042026	SRBD1	84	56.486	Macaca_fascicularis
ENSCVAG00000020212	si:ch211-117n7.8	97	53.441	ENSMMUG00000003490	SRBD1	88	54.799	Macaca_mulatta
ENSCVAG00000020212	si:ch211-117n7.8	89	54.717	ENSMNEG00000034701	SRBD1	83	54.717	Macaca_nemestrina
ENSCVAG00000020212	si:ch211-117n7.8	89	56.604	ENSMLEG00000000745	SRBD1	84	56.604	Mandrillus_leucophaeus
ENSCVAG00000020212	si:ch211-117n7.8	99	76.868	ENSMAMG00000021921	si:ch211-117n7.8	98	77.254	Mastacembelus_armatus
ENSCVAG00000020212	si:ch211-117n7.8	99	77.600	ENSMZEG00005027369	si:ch211-117n7.8	91	85.219	Maylandia_zebra
ENSCVAG00000020212	si:ch211-117n7.8	85	56.458	ENSMGAG00000010273	SRBD1	99	56.458	Meleagris_gallopavo
ENSCVAG00000020212	si:ch211-117n7.8	84	56.242	ENSMAUG00000013916	Srbd1	95	56.242	Mesocricetus_auratus
ENSCVAG00000020212	si:ch211-117n7.8	89	57.429	ENSMICG00000007835	SRBD1	83	57.429	Microcebus_murinus
ENSCVAG00000020212	si:ch211-117n7.8	90	56.941	ENSMOCG00000018716	Srbd1	85	56.941	Microtus_ochrogaster
ENSCVAG00000020212	si:ch211-117n7.8	98	74.062	ENSMMOG00000007507	si:ch211-117n7.8	100	73.958	Mola_mola
ENSCVAG00000020212	si:ch211-117n7.8	99	75.326	ENSMALG00000001562	si:ch211-117n7.8	98	74.925	Monopterus_albus
ENSCVAG00000020212	si:ch211-117n7.8	98	54.741	MGP_CAROLIEiJ_G0021934	Srbd1	99	58.117	Mus_caroli
ENSCVAG00000020212	si:ch211-117n7.8	98	54.721	ENSMUSG00000024135	Srbd1	99	56.429	Mus_musculus
ENSCVAG00000020212	si:ch211-117n7.8	95	55.617	MGP_PahariEiJ_G0020924	Srbd1	85	57.160	Mus_pahari
ENSCVAG00000020212	si:ch211-117n7.8	95	55.506	MGP_SPRETEiJ_G0022850	Srbd1	85	57.160	Mus_spretus
ENSCVAG00000020212	si:ch211-117n7.8	94	55.543	ENSMLUG00000007039	SRBD1	84	57.597	Myotis_lucifugus
ENSCVAG00000020212	si:ch211-117n7.8	98	52.862	ENSNGAG00000011893	Srbd1	85	55.392	Nannospalax_galili
ENSCVAG00000020212	si:ch211-117n7.8	99	75.051	ENSNBRG00000012873	si:ch211-117n7.8	100	75.051	Neolamprologus_brichardi
ENSCVAG00000020212	si:ch211-117n7.8	89	56.014	ENSNLEG00000016877	SRBD1	83	56.014	Nomascus_leucogenys
ENSCVAG00000020212	si:ch211-117n7.8	91	57.226	ENSODEG00000012095	SRBD1	87	57.226	Octodon_degus
ENSCVAG00000020212	si:ch211-117n7.8	99	77.600	ENSONIG00000000945	si:ch211-117n7.8	100	83.647	Oreochromis_niloticus
ENSCVAG00000020212	si:ch211-117n7.8	89	57.126	ENSOCUG00000015385	SRBD1	84	57.362	Oryctolagus_cuniculus
ENSCVAG00000020212	si:ch211-117n7.8	99	70.382	ENSORLG00000004427	si:ch211-117n7.8	85	77.346	Oryzias_latipes
ENSCVAG00000020212	si:ch211-117n7.8	99	73.220	ENSORLG00020012792	si:ch211-117n7.8	85	80.571	Oryzias_latipes_hni
ENSCVAG00000020212	si:ch211-117n7.8	99	73.494	ENSORLG00015018598	si:ch211-117n7.8	85	80.435	Oryzias_latipes_hsok
ENSCVAG00000020212	si:ch211-117n7.8	99	72.222	ENSOMEG00000012229	si:ch211-117n7.8	85	78.833	Oryzias_melastigma
ENSCVAG00000020212	si:ch211-117n7.8	89	55.124	ENSOGAG00000001076	SRBD1	84	55.124	Otolemur_garnettii
ENSCVAG00000020212	si:ch211-117n7.8	98	50.616	ENSOARG00000005958	SRBD1	84	53.846	Ovis_aries
ENSCVAG00000020212	si:ch211-117n7.8	89	56.132	ENSPPAG00000038442	SRBD1	83	56.132	Pan_paniscus
ENSCVAG00000020212	si:ch211-117n7.8	89	57.075	ENSPPRG00000003449	SRBD1	83	57.075	Panthera_pardus
ENSCVAG00000020212	si:ch211-117n7.8	89	56.958	ENSPTIG00000012495	SRBD1	83	56.958	Panthera_tigris_altaica
ENSCVAG00000020212	si:ch211-117n7.8	89	56.368	ENSPTRG00000011889	SRBD1	83	56.368	Pan_troglodytes
ENSCVAG00000020212	si:ch211-117n7.8	89	56.604	ENSPANG00000008063	SRBD1	88	54.911	Papio_anubis
ENSCVAG00000020212	si:ch211-117n7.8	92	67.434	ENSPKIG00000021973	si:ch211-117n7.8	88	67.434	Paramormyrops_kingsleyae
ENSCVAG00000020212	si:ch211-117n7.8	94	56.146	ENSPSIG00000008992	SRBD1	89	56.376	Pelodiscus_sinensis
ENSCVAG00000020212	si:ch211-117n7.8	99	71.897	ENSPMGG00000013348	si:ch211-117n7.8	99	71.545	Periophthalmus_magnuspinnatus
ENSCVAG00000020212	si:ch211-117n7.8	95	53.746	ENSPEMG00000020684	Srbd1	85	55.263	Peromyscus_maniculatus_bairdii
ENSCVAG00000020212	si:ch211-117n7.8	99	81.633	ENSPFOG00000010650	si:ch211-117n7.8	98	81.633	Poecilia_formosa
ENSCVAG00000020212	si:ch211-117n7.8	99	81.735	ENSPLAG00000002141	si:ch211-117n7.8	98	81.735	Poecilia_latipinna
ENSCVAG00000020212	si:ch211-117n7.8	99	81.735	ENSPMEG00000018537	si:ch211-117n7.8	98	81.735	Poecilia_mexicana
ENSCVAG00000020212	si:ch211-117n7.8	98	82.065	ENSPREG00000003258	si:ch211-117n7.8	97	82.065	Poecilia_reticulata
ENSCVAG00000020212	si:ch211-117n7.8	97	50.101	ENSPPYG00000012444	SRBD1	83	52.747	Pongo_abelii
ENSCVAG00000020212	si:ch211-117n7.8	81	52.237	ENSPCAG00000005629	SRBD1	80	52.237	Procavia_capensis
ENSCVAG00000020212	si:ch211-117n7.8	79	60.000	ENSPCOG00000017669	SRBD1	78	60.571	Propithecus_coquereli
ENSCVAG00000020212	si:ch211-117n7.8	89	50.177	ENSPVAG00000001782	SRBD1	84	50.177	Pteropus_vampyrus
ENSCVAG00000020212	si:ch211-117n7.8	98	72.690	ENSPNYG00000000508	si:ch211-117n7.8	100	72.690	Pundamilia_nyererei
ENSCVAG00000020212	si:ch211-117n7.8	95	66.809	ENSPNAG00000013492	SRBD1	87	70.684	Pygocentrus_nattereri
ENSCVAG00000020212	si:ch211-117n7.8	88	55.928	ENSRNOG00000014720	Srbd1	83	56.257	Rattus_norvegicus
ENSCVAG00000020212	si:ch211-117n7.8	89	56.250	ENSRBIG00000033486	SRBD1	84	56.250	Rhinopithecus_bieti
ENSCVAG00000020212	si:ch211-117n7.8	89	56.250	ENSRROG00000041599	SRBD1	84	56.250	Rhinopithecus_roxellana
ENSCVAG00000020212	si:ch211-117n7.8	97	53.871	ENSSBOG00000024982	SRBD1	84	56.958	Saimiri_boliviensis_boliviensis
ENSCVAG00000020212	si:ch211-117n7.8	98	63.883	ENSSFOG00015001128	si:ch211-117n7.8	99	63.459	Scleropages_formosus
ENSCVAG00000020212	si:ch211-117n7.8	99	74.226	ENSSMAG00000018256	si:ch211-117n7.8	85	82.081	Scophthalmus_maximus
ENSCVAG00000020212	si:ch211-117n7.8	92	83.429	ENSSLDG00000023189	si:ch211-117n7.8	86	83.429	Seriola_lalandi_dorsalis
ENSCVAG00000020212	si:ch211-117n7.8	89	53.081	ENSSARG00000009740	SRBD1	85	53.081	Sorex_araneus
ENSCVAG00000020212	si:ch211-117n7.8	95	56.828	ENSSPUG00000010475	SRBD1	98	57.948	Sphenodon_punctatus
ENSCVAG00000020212	si:ch211-117n7.8	95	76.324	ENSSPAG00000008092	-	100	72.873	Stegastes_partitus
ENSCVAG00000020212	si:ch211-117n7.8	98	54.362	ENSSSCG00000008445	SRBD1	82	57.362	Sus_scrofa
ENSCVAG00000020212	si:ch211-117n7.8	89	57.963	ENSTGUG00000003878	SRBD1	100	57.963	Taeniopygia_guttata
ENSCVAG00000020212	si:ch211-117n7.8	94	77.401	ENSTRUG00000007080	si:ch211-117n7.8	96	78.862	Takifugu_rubripes
ENSCVAG00000020212	si:ch211-117n7.8	99	70.359	ENSTNIG00000007464	si:ch211-117n7.8	85	77.445	Tetraodon_nigroviridis
ENSCVAG00000020212	si:ch211-117n7.8	59	80.851	ENSTBEG00000004556	SRBD1	54	80.851	Tupaia_belangeri
ENSCVAG00000020212	si:ch211-117n7.8	91	57.672	ENSTTRG00000011871	SRBD1	75	58.217	Tursiops_truncatus
ENSCVAG00000020212	si:ch211-117n7.8	97	54.644	ENSUAMG00000008126	SRBD1	97	56.159	Ursus_americanus
ENSCVAG00000020212	si:ch211-117n7.8	97	54.752	ENSUMAG00000012902	SRBD1	83	57.833	Ursus_maritimus
ENSCVAG00000020212	si:ch211-117n7.8	98	53.617	ENSVPAG00000006825	SRBD1	92	56.690	Vicugna_pacos
ENSCVAG00000020212	si:ch211-117n7.8	97	54.555	ENSVVUG00000005389	SRBD1	84	57.462	Vulpes_vulpes
ENSCVAG00000020212	si:ch211-117n7.8	99	44.466	ENSXETG00000002760	srbd1	88	47.243	Xenopus_tropicalis
ENSCVAG00000020212	si:ch211-117n7.8	99	81.939	ENSXMAG00000016861	si:ch211-117n7.8	98	81.939	Xiphophorus_maculatus