EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000020432 (Gene tree)
Gene ID: 107093569
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 9086 bases
Position: chrKL652933.1:43045-52130
Accession: 107093569
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000017344	TUDOR	PF00567.24	4.9e-05	1	1
ENSCVAP00000017344	SMN	PF06003.12	2.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000025981	-	2807	XM_015388710	ENSCVAP00000017344	238 (aa)	XP_015244196	UPI000742BA29

Gene Model

Click here to download ENSCVAG00000020432's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000020432's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000020432	smndc1	100	76.891	ENSG00000119953	SMNDC1	100	76.891	Homo_sapiens
ENSCVAG00000020432	smndc1	100	91.176	ENSAPOG00000021772	smndc1	100	91.176	Acanthochromis_polyacanthus
ENSCVAG00000020432	smndc1	100	76.471	ENSAMEG00000005251	SMNDC1	100	76.471	Ailuropoda_melanoleuca
ENSCVAG00000020432	smndc1	100	88.235	ENSACIG00000004819	smndc1	100	88.235	Amphilophus_citrinellus
ENSCVAG00000020432	smndc1	100	90.336	ENSAOCG00000017869	smndc1	100	90.336	Amphiprion_ocellaris
ENSCVAG00000020432	smndc1	100	90.336	ENSAPEG00000007752	smndc1	100	90.336	Amphiprion_percula
ENSCVAG00000020432	smndc1	100	89.916	ENSATEG00000006830	smndc1	100	89.916	Anabas_testudineus
ENSCVAG00000020432	smndc1	83	77.778	ENSAPLG00000004322	SMNDC1	100	77.778	Anas_platyrhynchos
ENSCVAG00000020432	smndc1	100	77.311	ENSACAG00000005983	SMNDC1	100	77.311	Anolis_carolinensis
ENSCVAG00000020432	smndc1	100	76.471	ENSANAG00000032875	SMNDC1	100	76.471	Aotus_nancymaae
ENSCVAG00000020432	smndc1	100	86.134	ENSACLG00000016360	smndc1	100	86.134	Astatotilapia_calliptera
ENSCVAG00000020432	smndc1	100	79.412	ENSAMXG00000020310	smndc1	100	79.412	Astyanax_mexicanus
ENSCVAG00000020432	smndc1	100	76.471	ENSBTAG00000000551	SMNDC1	100	76.471	Bos_taurus
ENSCVAG00000020432	smndc1	100	76.471	ENSCJAG00000018624	SMNDC1	100	76.471	Callithrix_jacchus
ENSCVAG00000020432	smndc1	100	76.471	ENSCAFG00000010720	SMNDC1	100	76.471	Canis_familiaris
ENSCVAG00000020432	smndc1	100	76.471	ENSCAFG00020011913	SMNDC1	100	76.471	Canis_lupus_dingo
ENSCVAG00000020432	smndc1	100	76.471	ENSCHIG00000010604	SMNDC1	100	76.471	Capra_hircus
ENSCVAG00000020432	smndc1	100	76.471	ENSTSYG00000026454	SMNDC1	100	76.471	Carlito_syrichta
ENSCVAG00000020432	smndc1	100	62.917	ENSCAPG00000009132	SMNDC1	100	73.134	Cavia_aperea
ENSCVAG00000020432	smndc1	100	76.471	ENSCPOG00000031666	SMNDC1	100	76.471	Cavia_porcellus
ENSCVAG00000020432	smndc1	100	76.471	ENSCCAG00000021793	SMNDC1	100	76.471	Cebus_capucinus
ENSCVAG00000020432	smndc1	100	76.050	ENSCATG00000035910	SMNDC1	100	76.050	Cercocebus_atys
ENSCVAG00000020432	smndc1	100	76.471	ENSCLAG00000002838	SMNDC1	100	76.471	Chinchilla_lanigera
ENSCVAG00000020432	smndc1	100	76.471	ENSCSAG00000005169	SMNDC1	100	76.471	Chlorocebus_sabaeus
ENSCVAG00000020432	smndc1	81	72.021	ENSCHOG00000002936	SMNDC1	100	72.021	Choloepus_hoffmanni
ENSCVAG00000020432	smndc1	100	76.891	ENSCPBG00000012837	SMNDC1	100	76.891	Chrysemys_picta_bellii
ENSCVAG00000020432	smndc1	100	76.471	ENSCANG00000031720	-	100	76.471	Colobus_angolensis_palliatus
ENSCVAG00000020432	smndc1	100	59.664	ENSCANG00000036994	-	100	59.664	Colobus_angolensis_palliatus
ENSCVAG00000020432	smndc1	100	70.588	ENSCANG00000034620	-	100	70.588	Colobus_angolensis_palliatus
ENSCVAG00000020432	smndc1	100	76.050	ENSCGRG00001012973	Smndc1	100	76.050	Cricetulus_griseus_chok1gshd
ENSCVAG00000020432	smndc1	100	76.050	ENSCGRG00000012396	Smndc1	100	76.050	Cricetulus_griseus_crigri
ENSCVAG00000020432	smndc1	100	86.134	ENSCSEG00000015621	smndc1	100	86.134	Cynoglossus_semilaevis
ENSCVAG00000020432	smndc1	100	82.008	ENSDARG00000056235	smndc1	100	82.008	Danio_rerio
ENSCVAG00000020432	smndc1	100	76.471	ENSDNOG00000016387	SMNDC1	83	76.471	Dasypus_novemcinctus
ENSCVAG00000020432	smndc1	100	76.471	ENSDORG00000023715	Smndc1	100	76.471	Dipodomys_ordii
ENSCVAG00000020432	smndc1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSCVAG00000020432	smndc1	100	67.635	ENSEBUG00000010929	smndc1	100	67.635	Eptatretus_burgeri
ENSCVAG00000020432	smndc1	100	76.471	ENSEASG00005014930	SMNDC1	100	76.471	Equus_asinus_asinus
ENSCVAG00000020432	smndc1	100	76.471	ENSECAG00000029973	SMNDC1	100	76.471	Equus_caballus
ENSCVAG00000020432	smndc1	83	55.556	ENSEEUG00000013407	-	100	55.556	Erinaceus_europaeus
ENSCVAG00000020432	smndc1	100	82.773	ENSELUG00000000227	smndc1	100	82.773	Esox_lucius
ENSCVAG00000020432	smndc1	100	76.471	ENSFCAG00000027353	SMNDC1	100	76.471	Felis_catus
ENSCVAG00000020432	smndc1	100	78.151	ENSFALG00000002306	SMNDC1	100	78.151	Ficedula_albicollis
ENSCVAG00000020432	smndc1	100	76.891	ENSFDAG00000006468	SMNDC1	100	76.891	Fukomys_damarensis
ENSCVAG00000020432	smndc1	100	93.277	ENSFHEG00000020150	smndc1	100	93.277	Fundulus_heteroclitus
ENSCVAG00000020432	smndc1	100	83.193	ENSGMOG00000016585	smndc1	100	83.193	Gadus_morhua
ENSCVAG00000020432	smndc1	100	78.151	ENSGALG00000008561	SMNDC1	100	78.151	Gallus_gallus
ENSCVAG00000020432	smndc1	100	92.437	ENSGAFG00000011582	smndc1	100	92.437	Gambusia_affinis
ENSCVAG00000020432	smndc1	100	85.714	ENSGACG00000009468	smndc1	100	85.714	Gasterosteus_aculeatus
ENSCVAG00000020432	smndc1	100	76.891	ENSGAGG00000024547	SMNDC1	100	76.891	Gopherus_agassizii
ENSCVAG00000020432	smndc1	100	76.471	ENSGGOG00000010071	SMNDC1	100	76.471	Gorilla_gorilla
ENSCVAG00000020432	smndc1	100	86.134	ENSHBUG00000017596	smndc1	100	86.134	Haplochromis_burtoni
ENSCVAG00000020432	smndc1	100	54.508	ENSHGLG00000001157	-	100	53.279	Heterocephalus_glaber_female
ENSCVAG00000020432	smndc1	100	76.891	ENSHGLG00000013390	-	100	76.891	Heterocephalus_glaber_female
ENSCVAG00000020432	smndc1	100	61.475	ENSHGLG00100004278	-	100	59.274	Heterocephalus_glaber_male
ENSCVAG00000020432	smndc1	100	76.891	ENSHGLG00100004814	-	100	76.891	Heterocephalus_glaber_male
ENSCVAG00000020432	smndc1	100	82.427	ENSHCOG00000000783	smndc1	100	82.427	Hippocampus_comes
ENSCVAG00000020432	smndc1	100	81.513	ENSIPUG00000004217	smndc1	100	81.513	Ictalurus_punctatus
ENSCVAG00000020432	smndc1	100	76.471	ENSSTOG00000006088	SMNDC1	100	76.471	Ictidomys_tridecemlineatus
ENSCVAG00000020432	smndc1	100	76.471	ENSJJAG00000019974	Smndc1	100	76.471	Jaculus_jaculus
ENSCVAG00000020432	smndc1	100	89.916	ENSKMAG00000020134	smndc1	100	89.916	Kryptolebias_marmoratus
ENSCVAG00000020432	smndc1	100	86.555	ENSLBEG00000004598	smndc1	100	86.555	Labrus_bergylta
ENSCVAG00000020432	smndc1	100	74.790	ENSLACG00000007784	SMNDC1	100	74.790	Latimeria_chalumnae
ENSCVAG00000020432	smndc1	100	82.773	ENSLOCG00000012355	smndc1	100	82.773	Lepisosteus_oculatus
ENSCVAG00000020432	smndc1	100	76.050	ENSLAFG00000014353	SMNDC1	100	76.050	Loxodonta_africana
ENSCVAG00000020432	smndc1	100	63.866	ENSMFAG00000038381	-	100	63.445	Macaca_fascicularis
ENSCVAG00000020432	smndc1	100	76.471	ENSMFAG00000002433	-	100	76.471	Macaca_fascicularis
ENSCVAG00000020432	smndc1	100	76.471	ENSMMUG00000007775	SMNDC1	100	76.471	Macaca_mulatta
ENSCVAG00000020432	smndc1	100	63.866	ENSMMUG00000045875	-	100	63.445	Macaca_mulatta
ENSCVAG00000020432	smndc1	100	76.471	ENSMNEG00000042963	-	100	76.471	Macaca_nemestrina
ENSCVAG00000020432	smndc1	100	67.647	ENSMNEG00000033853	-	100	67.647	Macaca_nemestrina
ENSCVAG00000020432	smndc1	100	71.967	ENSMLEG00000040236	SMNDC1	100	71.548	Mandrillus_leucophaeus
ENSCVAG00000020432	smndc1	89	85.915	ENSMAMG00000018233	smndc1	87	85.915	Mastacembelus_armatus
ENSCVAG00000020432	smndc1	100	86.134	ENSMZEG00005027510	smndc1	100	86.134	Maylandia_zebra
ENSCVAG00000020432	smndc1	84	78.000	ENSMGAG00000010777	SMNDC1	84	78.000	Meleagris_gallopavo
ENSCVAG00000020432	smndc1	100	76.471	ENSMAUG00000012243	-	100	76.471	Mesocricetus_auratus
ENSCVAG00000020432	smndc1	99	62.025	ENSMAUG00000005459	-	93	62.025	Mesocricetus_auratus
ENSCVAG00000020432	smndc1	100	76.050	ENSMICG00000027336	-	100	76.050	Microcebus_murinus
ENSCVAG00000020432	smndc1	100	65.546	ENSMICG00000031640	-	100	65.546	Microcebus_murinus
ENSCVAG00000020432	smndc1	100	76.050	ENSMOCG00000002458	Smndc1	100	76.050	Microtus_ochrogaster
ENSCVAG00000020432	smndc1	100	86.134	ENSMMOG00000008856	smndc1	100	86.134	Mola_mola
ENSCVAG00000020432	smndc1	100	76.891	ENSMODG00000010542	SMNDC1	100	76.891	Monodelphis_domestica
ENSCVAG00000020432	smndc1	100	86.555	ENSMALG00000017598	smndc1	100	86.555	Monopterus_albus
ENSCVAG00000020432	smndc1	100	76.891	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.891	Mus_caroli
ENSCVAG00000020432	smndc1	100	76.891	ENSMUSG00000025024	Smndc1	100	76.891	Mus_musculus
ENSCVAG00000020432	smndc1	100	76.891	MGP_PahariEiJ_G0014560	Smndc1	100	76.891	Mus_pahari
ENSCVAG00000020432	smndc1	100	76.891	MGP_SPRETEiJ_G0023993	Smndc1	100	76.891	Mus_spretus
ENSCVAG00000020432	smndc1	100	76.471	ENSMPUG00000002089	SMNDC1	100	76.471	Mustela_putorius_furo
ENSCVAG00000020432	smndc1	100	76.471	ENSMLUG00000016007	SMNDC1	100	76.471	Myotis_lucifugus
ENSCVAG00000020432	smndc1	100	76.891	ENSNGAG00000006833	Smndc1	100	76.891	Nannospalax_galili
ENSCVAG00000020432	smndc1	100	86.555	ENSNBRG00000017089	smndc1	100	86.555	Neolamprologus_brichardi
ENSCVAG00000020432	smndc1	100	76.471	ENSNLEG00000015471	SMNDC1	100	76.471	Nomascus_leucogenys
ENSCVAG00000020432	smndc1	70	58.084	ENSMEUG00000010120	-	82	58.084	Notamacropus_eugenii
ENSCVAG00000020432	smndc1	100	76.471	ENSOPRG00000015348	SMNDC1	100	76.471	Ochotona_princeps
ENSCVAG00000020432	smndc1	100	55.462	ENSODEG00000007594	-	100	53.361	Octodon_degus
ENSCVAG00000020432	smndc1	100	86.555	ENSONIG00000000434	smndc1	100	86.555	Oreochromis_niloticus
ENSCVAG00000020432	smndc1	100	77.311	ENSOANG00000001598	SMNDC1	100	77.311	Ornithorhynchus_anatinus
ENSCVAG00000020432	smndc1	100	76.050	ENSOCUG00000008145	-	100	76.050	Oryctolagus_cuniculus
ENSCVAG00000020432	smndc1	100	56.303	ENSOCUG00000012274	-	100	57.983	Oryctolagus_cuniculus
ENSCVAG00000020432	smndc1	100	82.353	ENSORLG00000005934	smndc1	95	82.353	Oryzias_latipes
ENSCVAG00000020432	smndc1	100	82.353	ENSORLG00020008796	smndc1	95	82.353	Oryzias_latipes_hni
ENSCVAG00000020432	smndc1	100	82.353	ENSORLG00015013666	smndc1	100	82.353	Oryzias_latipes_hsok
ENSCVAG00000020432	smndc1	100	81.513	ENSOMEG00000007590	smndc1	100	81.513	Oryzias_melastigma
ENSCVAG00000020432	smndc1	100	76.471	ENSOGAG00000000571	SMNDC1	100	76.471	Otolemur_garnettii
ENSCVAG00000020432	smndc1	100	76.471	ENSOARG00000009500	SMNDC1	100	76.471	Ovis_aries
ENSCVAG00000020432	smndc1	100	76.471	ENSPPAG00000027815	SMNDC1	100	76.471	Pan_paniscus
ENSCVAG00000020432	smndc1	100	76.471	ENSPPRG00000013749	SMNDC1	100	76.471	Panthera_pardus
ENSCVAG00000020432	smndc1	100	76.471	ENSPTIG00000011451	SMNDC1	100	76.471	Panthera_tigris_altaica
ENSCVAG00000020432	smndc1	100	76.471	ENSPTRG00000002937	SMNDC1	100	76.471	Pan_troglodytes
ENSCVAG00000020432	smndc1	100	76.471	ENSPANG00000020805	-	100	76.471	Papio_anubis
ENSCVAG00000020432	smndc1	100	71.849	ENSPANG00000031346	-	100	71.849	Papio_anubis
ENSCVAG00000020432	smndc1	100	81.092	ENSPKIG00000017164	smndc1	100	81.092	Paramormyrops_kingsleyae
ENSCVAG00000020432	smndc1	100	77.311	ENSPSIG00000012257	SMNDC1	100	77.311	Pelodiscus_sinensis
ENSCVAG00000020432	smndc1	100	80.252	ENSPMGG00000015651	smndc1	100	79.832	Periophthalmus_magnuspinnatus
ENSCVAG00000020432	smndc1	100	76.471	ENSPEMG00000022058	Smndc1	100	76.471	Peromyscus_maniculatus_bairdii
ENSCVAG00000020432	smndc1	100	63.115	ENSPMAG00000007705	smndc1	100	62.963	Petromyzon_marinus
ENSCVAG00000020432	smndc1	100	76.891	ENSPCIG00000018419	SMNDC1	100	76.891	Phascolarctos_cinereus
ENSCVAG00000020432	smndc1	95	57.080	ENSPCIG00000009693	-	98	57.080	Phascolarctos_cinereus
ENSCVAG00000020432	smndc1	100	92.017	ENSPFOG00000017113	smndc1	100	92.017	Poecilia_formosa
ENSCVAG00000020432	smndc1	100	92.017	ENSPLAG00000010372	smndc1	100	92.017	Poecilia_latipinna
ENSCVAG00000020432	smndc1	100	92.437	ENSPMEG00000012288	smndc1	100	92.437	Poecilia_mexicana
ENSCVAG00000020432	smndc1	100	91.176	ENSPREG00000012279	smndc1	100	91.176	Poecilia_reticulata
ENSCVAG00000020432	smndc1	100	76.471	ENSPPYG00000002643	SMNDC1	100	76.471	Pongo_abelii
ENSCVAG00000020432	smndc1	81	72.539	ENSPCAG00000016183	SMNDC1	100	72.539	Procavia_capensis
ENSCVAG00000020432	smndc1	100	76.050	ENSPCOG00000024343	SMNDC1	100	76.050	Propithecus_coquereli
ENSCVAG00000020432	smndc1	100	60.924	ENSPVAG00000004368	SMNDC1	100	60.924	Pteropus_vampyrus
ENSCVAG00000020432	smndc1	83	85.354	ENSPNYG00000024093	smndc1	86	85.354	Pundamilia_nyererei
ENSCVAG00000020432	smndc1	100	78.571	ENSPNAG00000025285	smndc1	100	78.571	Pygocentrus_nattereri
ENSCVAG00000020432	smndc1	100	76.891	ENSRNOG00000014833	Smndc1	100	76.891	Rattus_norvegicus
ENSCVAG00000020432	smndc1	100	62.185	ENSRBIG00000032452	-	100	62.185	Rhinopithecus_bieti
ENSCVAG00000020432	smndc1	100	76.050	ENSRBIG00000000224	-	100	76.050	Rhinopithecus_bieti
ENSCVAG00000020432	smndc1	100	62.605	ENSRROG00000039125	-	100	62.605	Rhinopithecus_roxellana
ENSCVAG00000020432	smndc1	100	76.471	ENSRROG00000044992	-	100	76.471	Rhinopithecus_roxellana
ENSCVAG00000020432	smndc1	100	76.471	ENSSBOG00000026789	SMNDC1	100	76.471	Saimiri_boliviensis_boliviensis
ENSCVAG00000020432	smndc1	100	76.891	ENSSHAG00000015189	SMNDC1	100	76.891	Sarcophilus_harrisii
ENSCVAG00000020432	smndc1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSCVAG00000020432	smndc1	100	86.975	ENSSMAG00000020118	smndc1	100	86.975	Scophthalmus_maximus
ENSCVAG00000020432	smndc1	100	88.655	ENSSDUG00000015330	smndc1	100	88.655	Seriola_dumerili
ENSCVAG00000020432	smndc1	100	88.655	ENSSLDG00000017325	smndc1	100	88.655	Seriola_lalandi_dorsalis
ENSCVAG00000020432	smndc1	100	76.471	ENSSARG00000006063	SMNDC1	100	76.471	Sorex_araneus
ENSCVAG00000020432	smndc1	100	77.311	ENSSPUG00000004574	SMNDC1	100	77.311	Sphenodon_punctatus
ENSCVAG00000020432	smndc1	100	87.395	ENSSPAG00000000338	smndc1	100	87.395	Stegastes_partitus
ENSCVAG00000020432	smndc1	100	76.471	ENSSSCG00000030507	SMNDC1	100	76.471	Sus_scrofa
ENSCVAG00000020432	smndc1	100	78.151	ENSTGUG00000010599	SMNDC1	100	78.151	Taeniopygia_guttata
ENSCVAG00000020432	smndc1	100	82.773	ENSTRUG00000023281	smndc1	100	82.773	Takifugu_rubripes
ENSCVAG00000020432	smndc1	100	83.193	ENSTNIG00000013331	smndc1	100	83.193	Tetraodon_nigroviridis
ENSCVAG00000020432	smndc1	100	76.471	ENSTBEG00000014337	SMNDC1	100	76.471	Tupaia_belangeri
ENSCVAG00000020432	smndc1	100	76.471	ENSUAMG00000008142	SMNDC1	100	76.471	Ursus_americanus
ENSCVAG00000020432	smndc1	100	76.471	ENSUMAG00000023722	SMNDC1	100	76.471	Ursus_maritimus
ENSCVAG00000020432	smndc1	83	76.263	ENSVPAG00000003402	SMNDC1	100	76.263	Vicugna_pacos
ENSCVAG00000020432	smndc1	100	76.471	ENSVVUG00000007820	SMNDC1	100	76.471	Vulpes_vulpes
ENSCVAG00000020432	smndc1	60	61.972	ENSXETG00000015415	SMNDC1	100	61.972	Xenopus_tropicalis
ENSCVAG00000020432	smndc1	100	92.017	ENSXCOG00000009159	smndc1	100	92.017	Xiphophorus_couchianus
ENSCVAG00000020432	smndc1	100	92.857	ENSXMAG00000012755	smndc1	100	92.857	Xiphophorus_maculatus