EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000020820 (Gene tree)
Gene ID: 107094159
Gene Symbol: ptcd3
Alias: fa08d08|wu:fa08d08|zgc:123014
Full Name: pentatricopeptide repeat domain 3
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 14930 bases
Position: chrKL652967.1:511148-526077
Accession: 107094159
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000017693	PPR	PF01535.20	4e-06	1	1
ENSCVAP00000017685	PPR	PF01535.20	7.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000026429	-	2193	-	ENSCVAP00000017693	610 (aa)	-	-
ENSCVAT00000026419	-	2113	XM_015389599	ENSCVAP00000017685	664 (aa)	XP_015245085	UPI0007425369

Gene Model

Click here to download ENSCVAG00000020820's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000020820's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000020820	ptcd3	96	75.249	ENSACIG00000022263	ptcd3	100	75.163	Amphilophus_citrinellus
ENSCVAG00000020820	ptcd3	99	73.090	ENSAOCG00000017186	ptcd3	96	71.713	Amphiprion_ocellaris
ENSCVAG00000020820	ptcd3	99	73.422	ENSAPEG00000016069	ptcd3	96	71.865	Amphiprion_percula
ENSCVAG00000020820	ptcd3	96	46.880	ENSAPLG00000005086	PTCD3	96	46.453	Anas_platyrhynchos
ENSCVAG00000020820	ptcd3	98	80.366	ENSACLG00000020653	ptcd3	98	78.626	Astatotilapia_calliptera
ENSCVAG00000020820	ptcd3	98	59.967	ENSAMXG00000011570	ptcd3	98	58.537	Astyanax_mexicanus
ENSCVAG00000020820	ptcd3	92	74.296	ENSGAFG00000015291	ptcd3	94	74.824	Gambusia_affinis
ENSCVAG00000020820	ptcd3	99	80.431	ENSHBUG00000020056	ptcd3	98	78.931	Haplochromis_burtoni
ENSCVAG00000020820	ptcd3	99	70.376	ENSLBEG00000015349	ptcd3	98	70.776	Labrus_bergylta
ENSCVAG00000020820	ptcd3	98	80.532	ENSMZEG00005004980	ptcd3	98	78.779	Maylandia_zebra
ENSCVAG00000020820	ptcd3	98	43.212	ENSMGAG00000013124	PTCD3	97	44.444	Meleagris_gallopavo
ENSCVAG00000020820	ptcd3	98	71.664	ENSMALG00000013282	ptcd3	99	69.757	Monopterus_albus
ENSCVAG00000020820	ptcd3	96	74.024	ENSNBRG00000000447	ptcd3	100	73.993	Neolamprologus_brichardi
ENSCVAG00000020820	ptcd3	98	80.200	ENSONIG00000015886	ptcd3	98	78.626	Oreochromis_niloticus
ENSCVAG00000020820	ptcd3	98	77.500	ENSORLG00000008776	ptcd3	100	76.462	Oryzias_latipes
ENSCVAG00000020820	ptcd3	98	77.500	ENSORLG00020020676	ptcd3	97	76.300	Oryzias_latipes_hni
ENSCVAG00000020820	ptcd3	94	61.833	ENSORLG00015015978	ptcd3	99	62.604	Oryzias_latipes_hsok
ENSCVAG00000020820	ptcd3	97	79.526	ENSPFOG00000004442	ptcd3	100	76.982	Poecilia_formosa
ENSCVAG00000020820	ptcd3	90	76.960	ENSPLAG00000021401	ptcd3	100	76.960	Poecilia_latipinna
ENSCVAG00000020820	ptcd3	96	74.061	ENSPMEG00000007153	ptcd3	100	74.061	Poecilia_mexicana
ENSCVAG00000020820	ptcd3	99	55.161	ENSSFOG00015019643	ptcd3	96	55.829	Scleropages_formosus
ENSCVAG00000020820	ptcd3	85	50.282	ENSTGUG00000010760	PTCD3	100	49.815	Taeniopygia_guttata
ENSCVAG00000020820	ptcd3	98	65.894	ENSTRUG00000003939	ptcd3	98	63.526	Takifugu_rubripes