EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000020941 (Gene tree)
Gene ID: 107094162
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 44698 bases
Position: chrKL652967.1:466127-510824
Accession: 107094162
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000017722	RNA_pol_Rpb1_5	PF04998.17	1.8e-99	1	1
ENSCVAP00000017722	RNA_pol_Rpb1_4	PF05000.17	3.1e-21	1	1
ENSCVAP00000017722	RNA_pol_Rpb1_2	PF00623.20	1.3e-68	1	1
ENSCVAP00000017722	RNA_pol_Rpb1_3	PF04983.18	1.3e-36	1	1
ENSCVAP00000017722	RNA_pol_Rpb1_1	PF04997.12	1.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000026470	-	5001	XM_015389604	ENSCVAP00000017722	1666 (aa)	XP_015245090	-

Gene Model

Click here to download ENSCVAG00000020941's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000020941's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000020941	polr1a	74	31.440	ENSCVAG00000005156	polr2a	60	31.068
ENSCVAG00000020941	polr1a	64	32.516	ENSCVAG00000023049	polr3a	71	32.836

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000020941	polr1a	100	64.764	ENSG00000068654	POLR1A	100	64.713	Homo_sapiens
ENSCVAG00000020941	polr1a	69	83.802	ENSAPOG00000017945	polr1a	99	83.802	Acanthochromis_polyacanthus
ENSCVAG00000020941	polr1a	100	64.401	ENSAMEG00000005807	POLR1A	100	69.663	Ailuropoda_melanoleuca
ENSCVAG00000020941	polr1a	100	76.450	ENSACIG00000022147	polr1a	100	76.036	Amphilophus_citrinellus
ENSCVAG00000020941	polr1a	100	82.181	ENSAOCG00000017336	polr1a	100	83.000	Amphiprion_ocellaris
ENSCVAG00000020941	polr1a	100	82.298	ENSAPEG00000016105	polr1a	100	82.422	Amphiprion_percula
ENSCVAG00000020941	polr1a	100	82.547	ENSATEG00000016773	polr1a	100	82.429	Anabas_testudineus
ENSCVAG00000020941	polr1a	86	65.353	ENSAPLG00000013871	POLR1A	99	64.453	Anas_platyrhynchos
ENSCVAG00000020941	polr1a	99	63.668	ENSACAG00000012141	POLR1A	99	63.070	Anolis_carolinensis
ENSCVAG00000020941	polr1a	100	64.315	ENSANAG00000033927	POLR1A	100	63.709	Aotus_nancymaae
ENSCVAG00000020941	polr1a	100	78.149	ENSACLG00000020541	polr1a	100	77.585	Astatotilapia_calliptera
ENSCVAG00000020941	polr1a	100	64.290	ENSBTAG00000006481	POLR1A	100	63.993	Bos_taurus
ENSCVAG00000020941	polr1a	99	38.739	WBGene00012999	rpoa-1	77	59.783	Caenorhabditis_elegans
ENSCVAG00000020941	polr1a	100	64.682	ENSCJAG00000019547	POLR1A	100	64.852	Callithrix_jacchus
ENSCVAG00000020941	polr1a	100	64.055	ENSCAFG00000007613	POLR1A	100	64.021	Canis_familiaris
ENSCVAG00000020941	polr1a	100	64.643	ENSCAFG00020014752	POLR1A	95	69.937	Canis_lupus_dingo
ENSCVAG00000020941	polr1a	100	64.220	ENSCHIG00000018204	POLR1A	100	63.910	Capra_hircus
ENSCVAG00000020941	polr1a	100	64.372	ENSTSYG00000002761	POLR1A	100	64.315	Carlito_syrichta
ENSCVAG00000020941	polr1a	97	61.065	ENSCAPG00000010132	POLR1A	99	61.561	Cavia_aperea
ENSCVAG00000020941	polr1a	100	64.097	ENSCPOG00000012350	POLR1A	100	64.600	Cavia_porcellus
ENSCVAG00000020941	polr1a	100	64.910	ENSCCAG00000019839	POLR1A	100	64.968	Cebus_capucinus
ENSCVAG00000020941	polr1a	100	64.994	ENSCATG00000029786	POLR1A	100	65.238	Cercocebus_atys
ENSCVAG00000020941	polr1a	100	63.972	ENSCLAG00000005187	POLR1A	100	64.240	Chinchilla_lanigera
ENSCVAG00000020941	polr1a	100	65.122	ENSCSAG00000016251	POLR1A	100	64.437	Chlorocebus_sabaeus
ENSCVAG00000020941	polr1a	99	65.101	ENSCPBG00000001115	POLR1A	99	64.855	Chrysemys_picta_bellii
ENSCVAG00000020941	polr1a	99	47.489	ENSCSAVG00000007184	-	99	47.167	Ciona_savignyi
ENSCVAG00000020941	polr1a	100	62.464	ENSCANG00000031785	POLR1A	100	61.943	Colobus_angolensis_palliatus
ENSCVAG00000020941	polr1a	100	59.701	ENSCGRG00001006651	Polr1a	100	60.162	Cricetulus_griseus_chok1gshd
ENSCVAG00000020941	polr1a	60	61.191	ENSCGRG00000010834	Polr1a	100	61.969	Cricetulus_griseus_crigri
ENSCVAG00000020941	polr1a	100	74.020	ENSCSEG00000020190	polr1a	100	74.195	Cynoglossus_semilaevis
ENSCVAG00000020941	polr1a	100	69.575	ENSDARG00000098375	polr1a	100	69.338	Danio_rerio
ENSCVAG00000020941	polr1a	100	62.168	ENSDNOG00000010829	POLR1A	100	61.902	Dasypus_novemcinctus
ENSCVAG00000020941	polr1a	100	63.831	ENSDORG00000008298	Polr1a	100	63.815	Dipodomys_ordii
ENSCVAG00000020941	polr1a	92	48.571	FBgn0019938	RpI1	99	43.709	Drosophila_melanogaster
ENSCVAG00000020941	polr1a	72	87.500	ENSETEG00000000412	-	71	87.500	Echinops_telfairi
ENSCVAG00000020941	polr1a	89	48.396	ENSEBUG00000005667	-	99	47.971	Eptatretus_burgeri
ENSCVAG00000020941	polr1a	100	65.067	ENSEASG00005001625	POLR1A	100	64.494	Equus_asinus_asinus
ENSCVAG00000020941	polr1a	95	70.643	ENSECAG00000036306	-	99	70.643	Equus_caballus
ENSCVAG00000020941	polr1a	95	70.643	ENSECAG00000010092	POLR1A	99	70.643	Equus_caballus
ENSCVAG00000020941	polr1a	95	70.643	ENSECAG00000030510	-	99	70.643	Equus_caballus
ENSCVAG00000020941	polr1a	81	81.102	ENSEEUG00000000676	POLR1A	79	81.102	Erinaceus_europaeus
ENSCVAG00000020941	polr1a	100	71.603	ENSELUG00000012769	polr1a	99	71.528	Esox_lucius
ENSCVAG00000020941	polr1a	100	64.948	ENSFCAG00000008966	POLR1A	100	64.167	Felis_catus
ENSCVAG00000020941	polr1a	99	63.398	ENSFALG00000010082	POLR1A	99	63.066	Ficedula_albicollis
ENSCVAG00000020941	polr1a	100	63.847	ENSFDAG00000013726	POLR1A	100	63.947	Fukomys_damarensis
ENSCVAG00000020941	polr1a	100	82.255	ENSFHEG00000005996	polr1a	100	81.652	Fundulus_heteroclitus
ENSCVAG00000020941	polr1a	100	67.342	ENSGMOG00000002230	polr1a	100	67.024	Gadus_morhua
ENSCVAG00000020941	polr1a	89	61.514	ENSGALG00000038160	-	98	61.036	Gallus_gallus
ENSCVAG00000020941	polr1a	100	84.245	ENSGAFG00000015266	polr1a	100	83.710	Gambusia_affinis
ENSCVAG00000020941	polr1a	100	75.719	ENSGACG00000018791	polr1a	100	75.898	Gasterosteus_aculeatus
ENSCVAG00000020941	polr1a	89	66.798	ENSGAGG00000004984	-	94	73.057	Gopherus_agassizii
ENSCVAG00000020941	polr1a	100	64.591	ENSGGOG00000001788	POLR1A	100	64.380	Gorilla_gorilla
ENSCVAG00000020941	polr1a	90	80.795	ENSHBUG00000020021	polr1a	98	81.266	Haplochromis_burtoni
ENSCVAG00000020941	polr1a	100	64.240	ENSHGLG00000006334	POLR1A	100	64.563	Heterocephalus_glaber_female
ENSCVAG00000020941	polr1a	100	64.014	ENSHGLG00100006614	POLR1A	100	64.376	Heterocephalus_glaber_male
ENSCVAG00000020941	polr1a	100	73.451	ENSHCOG00000003345	polr1a	100	73.215	Hippocampus_comes
ENSCVAG00000020941	polr1a	100	68.775	ENSIPUG00000013174	polr1a	100	68.321	Ictalurus_punctatus
ENSCVAG00000020941	polr1a	100	63.810	ENSSTOG00000012580	POLR1A	100	63.542	Ictidomys_tridecemlineatus
ENSCVAG00000020941	polr1a	100	64.203	ENSJJAG00000013113	Polr1a	100	64.468	Jaculus_jaculus
ENSCVAG00000020941	polr1a	100	83.617	ENSKMAG00000007399	polr1a	100	83.471	Kryptolebias_marmoratus
ENSCVAG00000020941	polr1a	94	81.081	ENSLBEG00000015401	polr1a	99	80.956	Labrus_bergylta
ENSCVAG00000020941	polr1a	53	70.326	ENSLACG00000003218	polr1a	100	70.326	Latimeria_chalumnae
ENSCVAG00000020941	polr1a	100	68.790	ENSLOCG00000010881	polr1a	100	67.527	Lepisosteus_oculatus
ENSCVAG00000020941	polr1a	100	64.492	ENSLAFG00000014948	POLR1A	100	63.922	Loxodonta_africana
ENSCVAG00000020941	polr1a	100	65.122	ENSMFAG00000046097	POLR1A	100	64.551	Macaca_fascicularis
ENSCVAG00000020941	polr1a	100	65.064	ENSMMUG00000015815	POLR1A	100	64.494	Macaca_mulatta
ENSCVAG00000020941	polr1a	100	65.122	ENSMNEG00000043313	POLR1A	100	64.551	Macaca_nemestrina
ENSCVAG00000020941	polr1a	100	64.757	ENSMLEG00000042428	POLR1A	100	64.078	Mandrillus_leucophaeus
ENSCVAG00000020941	polr1a	100	80.638	ENSMAMG00000016565	polr1a	100	80.342	Mastacembelus_armatus
ENSCVAG00000020941	polr1a	100	81.588	ENSMZEG00005004915	polr1a	100	81.294	Maylandia_zebra
ENSCVAG00000020941	polr1a	99	60.980	ENSMGAG00000013111	POLR1A	99	60.490	Meleagris_gallopavo
ENSCVAG00000020941	polr1a	91	63.711	ENSMAUG00000008497	Polr1a	99	63.300	Mesocricetus_auratus
ENSCVAG00000020941	polr1a	100	64.553	ENSMICG00000000757	POLR1A	100	64.286	Microcebus_murinus
ENSCVAG00000020941	polr1a	100	64.315	ENSMOCG00000000122	Polr1a	100	64.529	Microtus_ochrogaster
ENSCVAG00000020941	polr1a	100	78.478	ENSMMOG00000010216	polr1a	100	78.134	Mola_mola
ENSCVAG00000020941	polr1a	100	61.460	ENSMODG00000009335	POLR1A	100	61.222	Monodelphis_domestica
ENSCVAG00000020941	polr1a	100	80.271	ENSMALG00000013363	polr1a	100	80.283	Monopterus_albus
ENSCVAG00000020941	polr1a	100	63.820	MGP_CAROLIEiJ_G0028494	Polr1a	100	63.668	Mus_caroli
ENSCVAG00000020941	polr1a	100	63.647	ENSMUSG00000049553	Polr1a	100	63.642	Mus_musculus
ENSCVAG00000020941	polr1a	100	63.668	MGP_PahariEiJ_G0022230	Polr1a	100	63.621	Mus_pahari
ENSCVAG00000020941	polr1a	100	62.984	MGP_SPRETEiJ_G0029499	Polr1a	100	56.614	Mus_spretus
ENSCVAG00000020941	polr1a	100	65.029	ENSMPUG00000009135	POLR1A	100	65.356	Mustela_putorius_furo
ENSCVAG00000020941	polr1a	100	64.524	ENSMLUG00000015723	POLR1A	100	64.723	Myotis_lucifugus
ENSCVAG00000020941	polr1a	100	64.282	ENSNGAG00000017907	Polr1a	100	63.908	Nannospalax_galili
ENSCVAG00000020941	polr1a	100	81.059	ENSNBRG00000000519	polr1a	100	81.235	Neolamprologus_brichardi
ENSCVAG00000020941	polr1a	100	63.264	ENSNLEG00000002264	POLR1A	100	62.721	Nomascus_leucogenys
ENSCVAG00000020941	polr1a	75	81.890	ENSMEUG00000011665	-	75	81.890	Notamacropus_eugenii
ENSCVAG00000020941	polr1a	99	59.353	ENSOPRG00000008269	POLR1A	100	58.926	Ochotona_princeps
ENSCVAG00000020941	polr1a	100	64.702	ENSODEG00000003542	POLR1A	100	64.873	Octodon_degus
ENSCVAG00000020941	polr1a	100	80.549	ENSONIG00000015895	polr1a	100	80.491	Oreochromis_niloticus
ENSCVAG00000020941	polr1a	100	64.537	ENSOCUG00000010138	POLR1A	100	65.142	Oryctolagus_cuniculus
ENSCVAG00000020941	polr1a	100	80.270	ENSORLG00000008753	polr1a	99	79.894	Oryzias_latipes
ENSCVAG00000020941	polr1a	100	77.345	ENSORLG00020020726	polr1a	99	76.937	Oryzias_latipes_hni
ENSCVAG00000020941	polr1a	95	86.170	ENSORLG00015016071	polr1a	98	86.170	Oryzias_latipes_hsok
ENSCVAG00000020941	polr1a	100	64.122	ENSOGAG00000004031	POLR1A	100	63.808	Otolemur_garnettii
ENSCVAG00000020941	polr1a	100	64.129	ENSOARG00000020601	POLR1A	100	64.273	Ovis_aries
ENSCVAG00000020941	polr1a	100	64.475	ENSPPAG00000042450	POLR1A	100	64.265	Pan_paniscus
ENSCVAG00000020941	polr1a	100	65.180	ENSPPRG00000006702	POLR1A	100	64.396	Panthera_pardus
ENSCVAG00000020941	polr1a	100	64.686	ENSPTIG00000018783	POLR1A	100	63.911	Panthera_tigris_altaica
ENSCVAG00000020941	polr1a	100	65.006	ENSPTRG00000012147	POLR1A	100	64.380	Pan_troglodytes
ENSCVAG00000020941	polr1a	100	64.879	ENSPANG00000025908	POLR1A	100	65.122	Papio_anubis
ENSCVAG00000020941	polr1a	100	68.743	ENSPKIG00000005468	polr1a	98	72.222	Paramormyrops_kingsleyae
ENSCVAG00000020941	polr1a	63	62.659	ENSPSIG00000009321	-	99	62.878	Pelodiscus_sinensis
ENSCVAG00000020941	polr1a	55	80.263	ENSPMGG00000009718	polr1a	95	80.263	Periophthalmus_magnuspinnatus
ENSCVAG00000020941	polr1a	100	63.940	ENSPEMG00000022224	Polr1a	100	64.092	Peromyscus_maniculatus_bairdii
ENSCVAG00000020941	polr1a	95	63.289	ENSPCIG00000004222	POLR1A	99	62.983	Phascolarctos_cinereus
ENSCVAG00000020941	polr1a	100	84.818	ENSPFOG00000005025	polr1a	100	84.760	Poecilia_formosa
ENSCVAG00000020941	polr1a	100	84.900	ENSPLAG00000021389	polr1a	100	84.665	Poecilia_latipinna
ENSCVAG00000020941	polr1a	100	81.148	ENSPMEG00000006463	polr1a	100	81.462	Poecilia_mexicana
ENSCVAG00000020941	polr1a	100	84.368	ENSPREG00000002389	polr1a	100	84.075	Poecilia_reticulata
ENSCVAG00000020941	polr1a	100	64.774	ENSPPYG00000012217	POLR1A	100	64.208	Pongo_abelii
ENSCVAG00000020941	polr1a	87	66.047	ENSPCAG00000011582	POLR1A	87	66.047	Procavia_capensis
ENSCVAG00000020941	polr1a	100	64.542	ENSPCOG00000026987	POLR1A	100	64.600	Propithecus_coquereli
ENSCVAG00000020941	polr1a	95	64.391	ENSPVAG00000012674	POLR1A	95	63.425	Pteropus_vampyrus
ENSCVAG00000020941	polr1a	100	81.529	ENSPNYG00000000026	polr1a	100	81.235	Pundamilia_nyererei
ENSCVAG00000020941	polr1a	100	69.240	ENSPNAG00000019223	polr1a	100	68.448	Pygocentrus_nattereri
ENSCVAG00000020941	polr1a	100	63.458	ENSRNOG00000009545	Polr1a	100	63.841	Rattus_norvegicus
ENSCVAG00000020941	polr1a	100	64.948	ENSRBIG00000028335	POLR1A	100	64.380	Rhinopithecus_bieti
ENSCVAG00000020941	polr1a	100	64.948	ENSRROG00000031473	POLR1A	100	64.380	Rhinopithecus_roxellana
ENSCVAG00000020941	polr1a	99	36.546	YOR341W	RPA190	99	36.353	Saccharomyces_cerevisiae
ENSCVAG00000020941	polr1a	100	64.600	ENSSBOG00000030262	POLR1A	100	64.658	Saimiri_boliviensis_boliviensis
ENSCVAG00000020941	polr1a	100	59.264	ENSSHAG00000014739	POLR1A	100	59.206	Sarcophilus_harrisii
ENSCVAG00000020941	polr1a	82	70.563	ENSSFOG00015019716	polr1a	100	68.206	Scleropages_formosus
ENSCVAG00000020941	polr1a	100	81.291	ENSSMAG00000014342	polr1a	100	81.102	Scophthalmus_maximus
ENSCVAG00000020941	polr1a	100	82.384	ENSSDUG00000014631	polr1a	100	82.678	Seriola_dumerili
ENSCVAG00000020941	polr1a	100	79.400	ENSSLDG00000024095	polr1a	100	79.517	Seriola_lalandi_dorsalis
ENSCVAG00000020941	polr1a	69	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSCVAG00000020941	polr1a	94	70.833	ENSSPUG00000004215	POLR1A	98	70.833	Sphenodon_punctatus
ENSCVAG00000020941	polr1a	63	83.750	ENSSPAG00000016341	polr1a	95	83.750	Stegastes_partitus
ENSCVAG00000020941	polr1a	82	66.480	ENSSSCG00000008226	POLR1A	99	66.480	Sus_scrofa
ENSCVAG00000020941	polr1a	99	63.652	ENSTGUG00000010704	POLR1A	100	62.595	Taeniopygia_guttata
ENSCVAG00000020941	polr1a	100	75.866	ENSTRUG00000002210	polr1a	99	75.749	Takifugu_rubripes
ENSCVAG00000020941	polr1a	100	70.064	ENSTNIG00000010116	polr1a	100	70.012	Tetraodon_nigroviridis
ENSCVAG00000020941	polr1a	69	83.186	ENSTBEG00000008646	POLR1A	70	83.186	Tupaia_belangeri
ENSCVAG00000020941	polr1a	100	61.166	ENSTTRG00000008597	POLR1A	100	61.006	Tursiops_truncatus
ENSCVAG00000020941	polr1a	69	64.603	ENSUAMG00000012158	-	94	65.063	Ursus_americanus
ENSCVAG00000020941	polr1a	100	64.327	ENSUMAG00000006700	POLR1A	97	69.329	Ursus_maritimus
ENSCVAG00000020941	polr1a	100	63.945	ENSVVUG00000001245	POLR1A	100	63.886	Vulpes_vulpes
ENSCVAG00000020941	polr1a	100	60.977	ENSXETG00000001952	polr1a	99	62.937	Xenopus_tropicalis
ENSCVAG00000020941	polr1a	100	86.407	ENSXMAG00000004032	polr1a	100	85.757	Xiphophorus_maculatus