EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000021091 (Gene tree)
Gene ID: 107100655
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 4304 bases
Position: chrKL652530.1:1523536-1527839
Accession: 107100655
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000017915	LSM	PF01423.22	6.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000026723	-	1178	XM_015399229	ENSCVAP00000017915	108 (aa)	XP_015254715	UPI00074271BC

Gene Model

Click here to download ENSCVAG00000021091's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000021091's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000021091	lsm7	69	35.526	ENSCVAG00000020547	lsm8	73	35.526
ENSCVAG00000021091	lsm7	66	38.028	ENSCVAG00000012770	snrpg	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000021091	lsm7	94	96.040	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSCVAG00000021091	lsm7	88	97.895	ENSAPOG00000015573	lsm7	82	97.895	Acanthochromis_polyacanthus
ENSCVAG00000021091	lsm7	94	94.118	ENSAMEG00000005484	LSM7	99	94.118	Ailuropoda_melanoleuca
ENSCVAG00000021091	lsm7	90	97.938	ENSACIG00000006498	lsm7	77	97.938	Amphilophus_citrinellus
ENSCVAG00000021091	lsm7	94	98.039	ENSAOCG00000001077	lsm7	93	98.039	Amphiprion_ocellaris
ENSCVAG00000021091	lsm7	94	99.010	ENSAPEG00000000694	lsm7	98	99.010	Amphiprion_percula
ENSCVAG00000021091	lsm7	96	96.154	ENSAPEG00000024447	lsm7	93	98.039	Amphiprion_percula
ENSCVAG00000021091	lsm7	94	99.010	ENSATEG00000008557	lsm7	98	99.010	Anabas_testudineus
ENSCVAG00000021091	lsm7	94	87.129	ENSANAG00000022222	-	98	87.129	Aotus_nancymaae
ENSCVAG00000021091	lsm7	94	96.040	ENSANAG00000037196	-	98	96.040	Aotus_nancymaae
ENSCVAG00000021091	lsm7	94	98.020	ENSACLG00000021021	lsm7	98	98.020	Astatotilapia_calliptera
ENSCVAG00000021091	lsm7	94	97.030	ENSAMXG00000037622	lsm7	98	97.030	Astyanax_mexicanus
ENSCVAG00000021091	lsm7	94	96.040	ENSBTAG00000004521	LSM7	98	96.040	Bos_taurus
ENSCVAG00000021091	lsm7	94	57.843	WBGene00003081	lsm-7	98	57.843	Caenorhabditis_elegans
ENSCVAG00000021091	lsm7	50	96.296	ENSCJAG00000039713	-	66	96.296	Callithrix_jacchus
ENSCVAG00000021091	lsm7	94	94.118	ENSCAFG00000019409	LSM7	99	94.118	Canis_familiaris
ENSCVAG00000021091	lsm7	94	94.118	ENSCAFG00020018168	LSM7	75	94.118	Canis_lupus_dingo
ENSCVAG00000021091	lsm7	94	95.098	ENSCHIG00000023663	LSM7	99	95.098	Capra_hircus
ENSCVAG00000021091	lsm7	66	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSCVAG00000021091	lsm7	94	96.040	ENSCPOG00000014025	LSM7	100	96.040	Cavia_porcellus
ENSCVAG00000021091	lsm7	94	96.040	ENSCCAG00000035456	LSM7	99	96.040	Cebus_capucinus
ENSCVAG00000021091	lsm7	94	96.040	ENSCATG00000023543	LSM7	98	96.040	Cercocebus_atys
ENSCVAG00000021091	lsm7	94	96.040	ENSCLAG00000011635	LSM7	98	96.040	Chinchilla_lanigera
ENSCVAG00000021091	lsm7	94	96.040	ENSCSAG00000011599	LSM7	98	96.040	Chlorocebus_sabaeus
ENSCVAG00000021091	lsm7	67	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSCVAG00000021091	lsm7	89	79.167	ENSCING00000022134	-	97	79.167	Ciona_intestinalis
ENSCVAG00000021091	lsm7	94	96.040	ENSCANG00000035525	LSM7	98	96.040	Colobus_angolensis_palliatus
ENSCVAG00000021091	lsm7	83	85.556	ENSCGRG00001016005	-	92	85.556	Cricetulus_griseus_chok1gshd
ENSCVAG00000021091	lsm7	94	95.050	ENSCGRG00001000807	-	98	95.050	Cricetulus_griseus_chok1gshd
ENSCVAG00000021091	lsm7	83	85.556	ENSCGRG00000006821	-	92	85.556	Cricetulus_griseus_crigri
ENSCVAG00000021091	lsm7	94	95.050	ENSCGRG00000014355	-	99	93.204	Cricetulus_griseus_crigri
ENSCVAG00000021091	lsm7	100	94.444	ENSCSEG00000014900	lsm7	90	95.283	Cynoglossus_semilaevis
ENSCVAG00000021091	lsm7	94	97.030	ENSDARG00000058328	lsm7	98	97.030	Danio_rerio
ENSCVAG00000021091	lsm7	94	94.059	ENSDORG00000024460	Lsm7	99	94.059	Dipodomys_ordii
ENSCVAG00000021091	lsm7	96	71.698	FBgn0261068	LSm7	96	71.698	Drosophila_melanogaster
ENSCVAG00000021091	lsm7	94	93.069	ENSETEG00000012788	LSM7	99	93.069	Echinops_telfairi
ENSCVAG00000021091	lsm7	94	84.314	ENSEBUG00000016992	lsm7	98	84.314	Eptatretus_burgeri
ENSCVAG00000021091	lsm7	77	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSCVAG00000021091	lsm7	97	89.524	ENSECAG00000001440	LSM7	69	87.850	Equus_caballus
ENSCVAG00000021091	lsm7	94	95.050	ENSFCAG00000003445	LSM7	98	95.050	Felis_catus
ENSCVAG00000021091	lsm7	94	98.020	ENSFALG00000011912	LSM7	100	98.020	Ficedula_albicollis
ENSCVAG00000021091	lsm7	89	95.833	ENSFDAG00000007661	LSM7	100	95.833	Fukomys_damarensis
ENSCVAG00000021091	lsm7	100	99.074	ENSFHEG00000006349	lsm7	96	99.074	Fundulus_heteroclitus
ENSCVAG00000021091	lsm7	94	96.078	ENSGMOG00000013320	lsm7	99	96.078	Gadus_morhua
ENSCVAG00000021091	lsm7	94	100.000	ENSGAFG00000013902	lsm7	98	100.000	Gambusia_affinis
ENSCVAG00000021091	lsm7	94	97.059	ENSGACG00000010390	lsm7	99	97.059	Gasterosteus_aculeatus
ENSCVAG00000021091	lsm7	94	96.040	ENSGGOG00000010172	LSM7	98	96.040	Gorilla_gorilla
ENSCVAG00000021091	lsm7	94	98.020	ENSHBUG00000004616	lsm7	98	98.020	Haplochromis_burtoni
ENSCVAG00000021091	lsm7	94	96.040	ENSHGLG00000010587	LSM7	98	96.040	Heterocephalus_glaber_female
ENSCVAG00000021091	lsm7	94	96.040	ENSHGLG00100000852	LSM7	98	96.040	Heterocephalus_glaber_male
ENSCVAG00000021091	lsm7	94	98.020	ENSHCOG00000020252	lsm7	100	98.020	Hippocampus_comes
ENSCVAG00000021091	lsm7	94	97.030	ENSIPUG00000024724	lsm7	98	97.030	Ictalurus_punctatus
ENSCVAG00000021091	lsm7	94	96.040	ENSSTOG00000028372	LSM7	99	96.040	Ictidomys_tridecemlineatus
ENSCVAG00000021091	lsm7	93	96.000	ENSJJAG00000001936	Lsm7	97	96.000	Jaculus_jaculus
ENSCVAG00000021091	lsm7	94	100.000	ENSKMAG00000022151	lsm7	98	100.000	Kryptolebias_marmoratus
ENSCVAG00000021091	lsm7	94	98.039	ENSLBEG00000005203	lsm7	99	98.039	Labrus_bergylta
ENSCVAG00000021091	lsm7	94	97.030	ENSLACG00000015700	LSM7	98	97.030	Latimeria_chalumnae
ENSCVAG00000021091	lsm7	94	97.059	ENSLOCG00000004356	lsm7	99	97.059	Lepisosteus_oculatus
ENSCVAG00000021091	lsm7	95	95.146	ENSLAFG00000029302	LSM7	100	95.146	Loxodonta_africana
ENSCVAG00000021091	lsm7	94	96.040	ENSMFAG00000044572	LSM7	98	96.040	Macaca_fascicularis
ENSCVAG00000021091	lsm7	94	96.040	ENSMMUG00000000452	LSM7	99	96.040	Macaca_mulatta
ENSCVAG00000021091	lsm7	94	96.040	ENSMNEG00000004393	LSM7	98	96.040	Macaca_nemestrina
ENSCVAG00000021091	lsm7	94	96.040	ENSMLEG00000030852	LSM7	100	96.040	Mandrillus_leucophaeus
ENSCVAG00000021091	lsm7	94	98.020	ENSMAMG00000005410	lsm7	98	98.020	Mastacembelus_armatus
ENSCVAG00000021091	lsm7	94	98.020	ENSMZEG00005028055	lsm7	98	98.020	Maylandia_zebra
ENSCVAG00000021091	lsm7	94	98.020	ENSMGAG00000000750	LSM7	91	95.238	Meleagris_gallopavo
ENSCVAG00000021091	lsm7	94	95.050	ENSMAUG00000009276	Lsm7	99	94.118	Mesocricetus_auratus
ENSCVAG00000021091	lsm7	94	96.040	ENSMICG00000028619	-	98	96.040	Microcebus_murinus
ENSCVAG00000021091	lsm7	94	96.040	ENSMICG00000009988	-	98	96.040	Microcebus_murinus
ENSCVAG00000021091	lsm7	94	95.050	ENSMOCG00000016925	Lsm7	98	95.050	Microtus_ochrogaster
ENSCVAG00000021091	lsm7	94	99.010	ENSMMOG00000019645	lsm7	96	99.010	Mola_mola
ENSCVAG00000021091	lsm7	94	97.030	ENSMODG00000004722	LSM7	98	97.030	Monodelphis_domestica
ENSCVAG00000021091	lsm7	94	98.020	ENSMALG00000014511	lsm7	78	98.020	Monopterus_albus
ENSCVAG00000021091	lsm7	93	95.000	MGP_CAROLIEiJ_G0015607	Lsm7	97	95.000	Mus_caroli
ENSCVAG00000021091	lsm7	93	95.000	ENSMUSG00000035215	Lsm7	97	95.000	Mus_musculus
ENSCVAG00000021091	lsm7	93	95.000	MGP_PahariEiJ_G0031020	Lsm7	97	95.000	Mus_pahari
ENSCVAG00000021091	lsm7	93	95.000	MGP_SPRETEiJ_G0016425	Lsm7	97	95.000	Mus_spretus
ENSCVAG00000021091	lsm7	98	85.849	ENSMLUG00000024002	-	97	85.849	Myotis_lucifugus
ENSCVAG00000021091	lsm7	94	94.118	ENSMLUG00000013097	-	99	94.118	Myotis_lucifugus
ENSCVAG00000021091	lsm7	94	94.059	ENSNGAG00000021637	Lsm7	98	94.059	Nannospalax_galili
ENSCVAG00000021091	lsm7	94	98.020	ENSNBRG00000001237	-	81	98.020	Neolamprologus_brichardi
ENSCVAG00000021091	lsm7	95	96.117	ENSNBRG00000015770	lsm7	89	96.117	Neolamprologus_brichardi
ENSCVAG00000021091	lsm7	94	96.040	ENSNLEG00000002265	LSM7	98	96.040	Nomascus_leucogenys
ENSCVAG00000021091	lsm7	94	75.248	ENSODEG00000008190	-	98	75.248	Octodon_degus
ENSCVAG00000021091	lsm7	94	96.040	ENSODEG00000013590	-	98	96.040	Octodon_degus
ENSCVAG00000021091	lsm7	94	89.109	ENSODEG00000018769	-	98	89.109	Octodon_degus
ENSCVAG00000021091	lsm7	94	98.020	ENSONIG00000001801	lsm7	87	98.020	Oreochromis_niloticus
ENSCVAG00000021091	lsm7	94	99.010	ENSORLG00000023951	lsm7	98	99.010	Oryzias_latipes
ENSCVAG00000021091	lsm7	94	99.010	ENSORLG00020022226	lsm7	98	99.010	Oryzias_latipes_hni
ENSCVAG00000021091	lsm7	95	98.058	ENSORLG00015020044	lsm7	95	98.058	Oryzias_latipes_hsok
ENSCVAG00000021091	lsm7	95	98.058	ENSOMEG00000012806	lsm7	98	99.010	Oryzias_melastigma
ENSCVAG00000021091	lsm7	94	93.137	ENSOGAG00000000144	-	100	93.137	Otolemur_garnettii
ENSCVAG00000021091	lsm7	94	84.158	ENSOGAG00000024373	-	98	84.158	Otolemur_garnettii
ENSCVAG00000021091	lsm7	94	95.098	ENSOARG00000014013	LSM7	99	95.098	Ovis_aries
ENSCVAG00000021091	lsm7	94	96.040	ENSPPAG00000026500	LSM7	98	96.040	Pan_paniscus
ENSCVAG00000021091	lsm7	94	95.050	ENSPPRG00000008624	LSM7	98	95.050	Panthera_pardus
ENSCVAG00000021091	lsm7	94	95.050	ENSPTIG00000016252	LSM7	98	95.050	Panthera_tigris_altaica
ENSCVAG00000021091	lsm7	94	96.040	ENSPTRG00000010233	LSM7	98	96.040	Pan_troglodytes
ENSCVAG00000021091	lsm7	94	96.040	ENSPANG00000020668	LSM7	98	96.040	Papio_anubis
ENSCVAG00000021091	lsm7	95	98.058	ENSPKIG00000011325	lsm7	98	99.010	Paramormyrops_kingsleyae
ENSCVAG00000021091	lsm7	94	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSCVAG00000021091	lsm7	94	99.010	ENSPMGG00000006498	lsm7	98	99.010	Periophthalmus_magnuspinnatus
ENSCVAG00000021091	lsm7	94	97.030	ENSPCIG00000030454	LSM7	99	97.030	Phascolarctos_cinereus
ENSCVAG00000021091	lsm7	99	94.393	ENSPFOG00000012467	lsm7	95	94.393	Poecilia_formosa
ENSCVAG00000021091	lsm7	100	97.222	ENSPLAG00000000252	lsm7	100	97.222	Poecilia_latipinna
ENSCVAG00000021091	lsm7	100	97.222	ENSPMEG00000000587	lsm7	100	97.222	Poecilia_mexicana
ENSCVAG00000021091	lsm7	79	79.070	ENSPREG00000016718	lsm7	66	79.070	Poecilia_reticulata
ENSCVAG00000021091	lsm7	68	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSCVAG00000021091	lsm7	94	96.040	ENSPCOG00000017177	LSM7	99	96.040	Propithecus_coquereli
ENSCVAG00000021091	lsm7	94	98.020	ENSPNYG00000006938	lsm7	98	98.020	Pundamilia_nyererei
ENSCVAG00000021091	lsm7	94	97.030	ENSPNAG00000010141	lsm7	99	97.030	Pygocentrus_nattereri
ENSCVAG00000021091	lsm7	93	96.000	ENSRNOG00000019552	Lsm7	97	96.000	Rattus_norvegicus
ENSCVAG00000021091	lsm7	94	96.040	ENSRBIG00000035978	LSM7	98	96.040	Rhinopithecus_bieti
ENSCVAG00000021091	lsm7	94	96.040	ENSRROG00000034044	LSM7	98	96.040	Rhinopithecus_roxellana
ENSCVAG00000021091	lsm7	82	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSCVAG00000021091	lsm7	94	96.040	ENSSBOG00000034899	LSM7	98	96.040	Saimiri_boliviensis_boliviensis
ENSCVAG00000021091	lsm7	94	97.030	ENSSFOG00015006728	lsm7	98	97.030	Scleropages_formosus
ENSCVAG00000021091	lsm7	94	99.010	ENSSMAG00000004195	lsm7	93	99.010	Scophthalmus_maximus
ENSCVAG00000021091	lsm7	94	99.010	ENSSDUG00000001863	lsm7	98	99.010	Seriola_dumerili
ENSCVAG00000021091	lsm7	94	99.010	ENSSLDG00000016339	lsm7	98	99.010	Seriola_lalandi_dorsalis
ENSCVAG00000021091	lsm7	98	95.283	ENSSPAG00000015221	lsm7	98	99.010	Stegastes_partitus
ENSCVAG00000021091	lsm7	94	96.040	ENSSSCG00000013463	LSM7	99	96.040	Sus_scrofa
ENSCVAG00000021091	lsm7	94	98.020	ENSTGUG00000000067	LSM7	100	98.020	Taeniopygia_guttata
ENSCVAG00000021091	lsm7	94	98.020	ENSTRUG00000022913	lsm7	98	98.020	Takifugu_rubripes
ENSCVAG00000021091	lsm7	94	98.020	ENSTNIG00000015525	lsm7	98	98.020	Tetraodon_nigroviridis
ENSCVAG00000021091	lsm7	65	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSCVAG00000021091	lsm7	94	94.118	ENSUAMG00000000912	LSM7	85	94.118	Ursus_americanus
ENSCVAG00000021091	lsm7	97	92.381	ENSUMAG00000006556	LSM7	81	93.269	Ursus_maritimus
ENSCVAG00000021091	lsm7	66	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSCVAG00000021091	lsm7	94	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSCVAG00000021091	lsm7	94	99.020	ENSXCOG00000002572	lsm7	100	99.020	Xiphophorus_couchianus
ENSCVAG00000021091	lsm7	94	100.000	ENSXMAG00000018630	lsm7	98	100.000	Xiphophorus_maculatus