EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000021124 (Gene tree)
Gene ID: -
Gene Symbol: si:ch211-153b23.3
Alias: -
Full Name: uncharacterized LOC107089033
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 4520 bases
Position: chrKL652736.1:993935-998454
Accession: 107089033
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000017930	Sua5_yciO_yrdC	PF01300.18	1.5e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000026744	-	2631	XM_015381551	ENSCVAP00000017930	877 (aa)	XP_015237037	-

Gene Model

Click here to download ENSCVAG00000021124's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000021124's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000021124	si:ch211-153b23.3	74	30.088	ENSCVAG00000021145	si:ch211-153b23.4	80	30.236

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000021124	si:ch211-153b23.3	58	31.214	ENSAPOG00000006144	si:ch211-153b23.4	60	31.214	Acanthochromis_polyacanthus
ENSCVAG00000021124	si:ch211-153b23.3	58	31.214	ENSAPOG00000006178	si:ch211-153b23.4	59	31.214	Acanthochromis_polyacanthus
ENSCVAG00000021124	si:ch211-153b23.3	93	89.697	ENSACIG00000006968	si:ch211-153b23.3	100	89.697	Amphilophus_citrinellus
ENSCVAG00000021124	si:ch211-153b23.3	100	84.485	ENSAOCG00000010974	si:ch211-153b23.3	100	84.485	Amphiprion_ocellaris
ENSCVAG00000021124	si:ch211-153b23.3	100	84.258	ENSAPEG00000014700	si:ch211-153b23.3	100	84.258	Amphiprion_percula
ENSCVAG00000021124	si:ch211-153b23.3	100	80.159	ENSATEG00000004956	si:ch211-153b23.3	99	80.159	Anabas_testudineus
ENSCVAG00000021124	si:ch211-153b23.3	100	79.796	ENSACLG00000005894	si:ch211-153b23.3	100	79.796	Astatotilapia_calliptera
ENSCVAG00000021124	si:ch211-153b23.3	100	71.950	ENSAMXG00000038564	si:ch211-153b23.3	99	71.982	Astyanax_mexicanus
ENSCVAG00000021124	si:ch211-153b23.3	77	30.117	ENSAMXG00000013879	si:ch211-153b23.4	76	30.236	Astyanax_mexicanus
ENSCVAG00000021124	si:ch211-153b23.3	99	77.412	ENSCSEG00000014853	si:ch211-153b23.3	100	77.412	Cynoglossus_semilaevis
ENSCVAG00000021124	si:ch211-153b23.3	100	70.462	ENSDARG00000104919	si:ch211-153b23.3	99	70.462	Danio_rerio
ENSCVAG00000021124	si:ch211-153b23.3	58	31.992	ENSDARG00000077169	si:ch211-153b23.4	58	31.992	Danio_rerio
ENSCVAG00000021124	si:ch211-153b23.3	81	82.569	ENSELUG00000004912	si:ch211-153b23.3	99	82.569	Esox_lucius
ENSCVAG00000021124	si:ch211-153b23.3	100	92.588	ENSFHEG00000010030	si:ch211-153b23.3	99	92.588	Fundulus_heteroclitus
ENSCVAG00000021124	si:ch211-153b23.3	100	91.002	ENSGAFG00000007455	si:ch211-153b23.3	99	91.002	Gambusia_affinis
ENSCVAG00000021124	si:ch211-153b23.3	100	79.909	ENSHBUG00000001760	si:ch211-153b23.3	100	79.909	Haplochromis_burtoni
ENSCVAG00000021124	si:ch211-153b23.3	55	32.934	ENSHBUG00000000013	si:ch211-153b23.4	64	32.934	Haplochromis_burtoni
ENSCVAG00000021124	si:ch211-153b23.3	100	71.331	ENSIPUG00000015213	si:ch211-153b23.3	99	71.445	Ictalurus_punctatus
ENSCVAG00000021124	si:ch211-153b23.3	99	85.046	ENSKMAG00000006792	si:ch211-153b23.3	99	85.046	Kryptolebias_marmoratus
ENSCVAG00000021124	si:ch211-153b23.3	100	80.181	ENSLBEG00000026324	si:ch211-153b23.3	99	80.181	Labrus_bergylta
ENSCVAG00000021124	si:ch211-153b23.3	94	57.770	ENSLACG00000005800	-	99	57.788	Latimeria_chalumnae
ENSCVAG00000021124	si:ch211-153b23.3	84	53.061	ENSLOCG00000015063	si:ch211-153b23.3	98	53.061	Lepisosteus_oculatus
ENSCVAG00000021124	si:ch211-153b23.3	100	81.612	ENSMAMG00000009328	si:ch211-153b23.3	100	81.612	Mastacembelus_armatus
ENSCVAG00000021124	si:ch211-153b23.3	100	79.796	ENSMZEG00005011450	si:ch211-153b23.3	100	79.796	Maylandia_zebra
ENSCVAG00000021124	si:ch211-153b23.3	100	80.135	ENSMMOG00000004436	si:ch211-153b23.3	99	80.135	Mola_mola
ENSCVAG00000021124	si:ch211-153b23.3	100	80.023	ENSNBRG00000013370	si:ch211-153b23.3	100	80.023	Neolamprologus_brichardi
ENSCVAG00000021124	si:ch211-153b23.3	100	79.279	ENSORLG00000006161	si:ch211-153b23.3	99	79.279	Oryzias_latipes
ENSCVAG00000021124	si:ch211-153b23.3	58	31.963	ENSORLG00000006169	si:ch211-153b23.4	58	31.963	Oryzias_latipes
ENSCVAG00000021124	si:ch211-153b23.3	97	80.445	ENSORLG00020000910	si:ch211-153b23.3	100	80.445	Oryzias_latipes_hni
ENSCVAG00000021124	si:ch211-153b23.3	97	79.907	ENSORLG00015003698	si:ch211-153b23.3	100	79.907	Oryzias_latipes_hsok
ENSCVAG00000021124	si:ch211-153b23.3	100	80.496	ENSOMEG00000007661	si:ch211-153b23.3	99	80.496	Oryzias_melastigma
ENSCVAG00000021124	si:ch211-153b23.3	97	72.410	ENSPKIG00000022450	si:ch211-153b23.3	100	72.410	Paramormyrops_kingsleyae
ENSCVAG00000021124	si:ch211-153b23.3	58	32.325	ENSPKIG00000025681	si:ch211-153b23.4	59	32.325	Paramormyrops_kingsleyae
ENSCVAG00000021124	si:ch211-153b23.3	67	32.060	ENSPKIG00000014429	si:ch211-153b23.4	74	30.631	Paramormyrops_kingsleyae
ENSCVAG00000021124	si:ch211-153b23.3	99	50.111	ENSPKIG00000021029	-	99	49.889	Paramormyrops_kingsleyae
ENSCVAG00000021124	si:ch211-153b23.3	82	77.551	ENSPMGG00000001311	si:ch211-153b23.3	99	80.851	Periophthalmus_magnuspinnatus
ENSCVAG00000021124	si:ch211-153b23.3	100	91.299	ENSPFOG00000012289	si:ch211-153b23.3	99	91.299	Poecilia_formosa
ENSCVAG00000021124	si:ch211-153b23.3	99	92.360	ENSPLAG00000016320	si:ch211-153b23.3	100	92.360	Poecilia_latipinna
ENSCVAG00000021124	si:ch211-153b23.3	100	92.027	ENSPMEG00000008884	si:ch211-153b23.3	99	92.027	Poecilia_mexicana
ENSCVAG00000021124	si:ch211-153b23.3	100	79.682	ENSPNYG00000000251	si:ch211-153b23.3	100	79.682	Pundamilia_nyererei
ENSCVAG00000021124	si:ch211-153b23.3	58	33.141	ENSPNAG00000019554	si:ch211-153b23.4	58	33.141	Pygocentrus_nattereri
ENSCVAG00000021124	si:ch211-153b23.3	100	73.409	ENSPNAG00000019592	si:ch211-153b23.3	99	73.409	Pygocentrus_nattereri
ENSCVAG00000021124	si:ch211-153b23.3	100	72.809	ENSSFOG00015010910	si:ch211-153b23.3	99	72.809	Scleropages_formosus
ENSCVAG00000021124	si:ch211-153b23.3	68	51.208	ENSSFOG00015009030	-	96	51.208	Scleropages_formosus
ENSCVAG00000021124	si:ch211-153b23.3	99	82.460	ENSSMAG00000005446	si:ch211-153b23.3	100	82.460	Scophthalmus_maximus
ENSCVAG00000021124	si:ch211-153b23.3	100	83.126	ENSSLDG00000008629	si:ch211-153b23.3	100	83.126	Seriola_lalandi_dorsalis
ENSCVAG00000021124	si:ch211-153b23.3	99	76.147	ENSTRUG00000020530	si:ch211-153b23.3	100	76.376	Takifugu_rubripes
ENSCVAG00000021124	si:ch211-153b23.3	93	80.827	ENSTNIG00000008962	si:ch211-153b23.3	99	80.827	Tetraodon_nigroviridis
ENSCVAG00000021124	si:ch211-153b23.3	100	90.888	ENSXMAG00000029318	si:ch211-153b23.3	99	90.888	Xiphophorus_maculatus