EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000021145 (Gene tree)
Gene ID: -
Gene Symbol: si:ch211-153b23.4
Alias: fj08f03|fj10b02|im:7041150|wu:fj08f03|wu:fj10b02
Full Name: uncharacterized LOC107089023
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 3060 bases
Position: chrKL652736.1:972015-975074
Accession: 107089023
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000031692	Sua5_yciO_yrdC	PF01300.18	6.1e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000026779	-	2414	XM_015381540	ENSCVAP00000031692	804 (aa)	XP_015237026	-

Gene Model

Click here to download ENSCVAG00000021145's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000021145's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000021145	si:ch211-153b23.4	80	30.236	ENSCVAG00000021124	si:ch211-153b23.3	74	30.088

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000021145	si:ch211-153b23.4	97	83.376	ENSAPOG00000006144	si:ch211-153b23.4	91	83.376	Acanthochromis_polyacanthus
ENSCVAG00000021145	si:ch211-153b23.4	96	84.000	ENSAPOG00000006178	si:ch211-153b23.4	90	84.000	Acanthochromis_polyacanthus
ENSCVAG00000021145	si:ch211-153b23.4	99	84.065	ENSACIG00000006997	si:ch211-153b23.4	93	84.065	Amphilophus_citrinellus
ENSCVAG00000021145	si:ch211-153b23.4	64	33.019	ENSAOCG00000010974	si:ch211-153b23.3	59	33.019	Amphiprion_ocellaris
ENSCVAG00000021145	si:ch211-153b23.4	99	78.027	ENSAOCG00000010999	si:ch211-153b23.4	97	78.027	Amphiprion_ocellaris
ENSCVAG00000021145	si:ch211-153b23.4	99	80.199	ENSAPEG00000014665	si:ch211-153b23.4	94	80.199	Amphiprion_percula
ENSCVAG00000021145	si:ch211-153b23.4	64	32.472	ENSAPEG00000014700	si:ch211-153b23.3	59	32.472	Amphiprion_percula
ENSCVAG00000021145	si:ch211-153b23.4	100	82.695	ENSATEG00000004948	si:ch211-153b23.4	92	82.695	Anabas_testudineus
ENSCVAG00000021145	si:ch211-153b23.4	99	60.323	ENSAPLG00000013596	-	97	60.323	Anas_platyrhynchos
ENSCVAG00000021145	si:ch211-153b23.4	100	81.088	ENSACLG00000005471	si:ch211-153b23.4	92	81.088	Astatotilapia_calliptera
ENSCVAG00000021145	si:ch211-153b23.4	64	33.333	ENSACLG00000005894	si:ch211-153b23.3	57	33.143	Astatotilapia_calliptera
ENSCVAG00000021145	si:ch211-153b23.4	80	31.579	ENSAMXG00000038564	si:ch211-153b23.3	74	31.579	Astyanax_mexicanus
ENSCVAG00000021145	si:ch211-153b23.4	100	73.821	ENSAMXG00000013879	si:ch211-153b23.4	95	73.821	Astyanax_mexicanus
ENSCVAG00000021145	si:ch211-153b23.4	64	33.840	ENSCSEG00000014853	si:ch211-153b23.3	58	33.840	Cynoglossus_semilaevis
ENSCVAG00000021145	si:ch211-153b23.4	100	78.986	ENSCSEG00000014838	si:ch211-153b23.4	96	78.986	Cynoglossus_semilaevis
ENSCVAG00000021145	si:ch211-153b23.4	100	69.420	ENSDARG00000077169	si:ch211-153b23.4	92	69.420	Danio_rerio
ENSCVAG00000021145	si:ch211-153b23.4	80	31.899	ENSDARG00000104919	si:ch211-153b23.3	74	31.899	Danio_rerio
ENSCVAG00000021145	si:ch211-153b23.4	100	71.305	ENSELUG00000004961	si:ch211-153b23.4	91	71.305	Esox_lucius
ENSCVAG00000021145	si:ch211-153b23.4	99	57.481	ENSFALG00000011343	-	92	57.481	Ficedula_albicollis
ENSCVAG00000021145	si:ch211-153b23.4	80	30.088	ENSFHEG00000010030	si:ch211-153b23.3	74	30.088	Fundulus_heteroclitus
ENSCVAG00000021145	si:ch211-153b23.4	99	92.095	ENSFHEG00000010001	si:ch211-153b23.4	100	92.095	Fundulus_heteroclitus
ENSCVAG00000021145	si:ch211-153b23.4	85	95.455	ENSFHEG00000009888	si:ch211-153b23.4	76	95.455	Fundulus_heteroclitus
ENSCVAG00000021145	si:ch211-153b23.4	80	31.231	ENSGAFG00000007455	si:ch211-153b23.3	74	31.231	Gambusia_affinis
ENSCVAG00000021145	si:ch211-153b23.4	93	90.909	ENSGAFG00000007442	si:ch211-153b23.4	90	90.969	Gambusia_affinis
ENSCVAG00000021145	si:ch211-153b23.4	100	82.324	ENSGACG00000018253	si:ch211-153b23.4	95	82.324	Gasterosteus_aculeatus
ENSCVAG00000021145	si:ch211-153b23.4	86	64.040	ENSGAGG00000024601	-	93	64.040	Gopherus_agassizii
ENSCVAG00000021145	si:ch211-153b23.4	64	33.333	ENSHBUG00000001760	si:ch211-153b23.3	57	33.143	Haplochromis_burtoni
ENSCVAG00000021145	si:ch211-153b23.4	83	81.157	ENSHBUG00000000013	si:ch211-153b23.4	89	81.157	Haplochromis_burtoni
ENSCVAG00000021145	si:ch211-153b23.4	77	30.696	ENSIPUG00000015213	si:ch211-153b23.3	72	30.696	Ictalurus_punctatus
ENSCVAG00000021145	si:ch211-153b23.4	100	70.900	ENSIPUG00000015205	si:ch211-153b23.4	96	70.900	Ictalurus_punctatus
ENSCVAG00000021145	si:ch211-153b23.4	98	88.510	ENSKMAG00000006829	si:ch211-153b23.4	98	88.510	Kryptolebias_marmoratus
ENSCVAG00000021145	si:ch211-153b23.4	100	87.639	ENSKMAG00000006919	-	92	87.639	Kryptolebias_marmoratus
ENSCVAG00000021145	si:ch211-153b23.4	80	31.009	ENSKMAG00000006792	si:ch211-153b23.3	74	31.009	Kryptolebias_marmoratus
ENSCVAG00000021145	si:ch211-153b23.4	64	32.129	ENSLBEG00000026324	si:ch211-153b23.3	56	32.129	Labrus_bergylta
ENSCVAG00000021145	si:ch211-153b23.4	100	82.942	ENSLBEG00000026309	si:ch211-153b23.4	93	82.942	Labrus_bergylta
ENSCVAG00000021145	si:ch211-153b23.4	80	30.655	ENSLACG00000005800	-	79	30.655	Latimeria_chalumnae
ENSCVAG00000021145	si:ch211-153b23.4	99	63.896	ENSLACG00000017592	si:ch211-153b23.4	96	63.896	Latimeria_chalumnae
ENSCVAG00000021145	si:ch211-153b23.4	100	85.963	ENSMAMG00000009358	si:ch211-153b23.4	99	85.963	Mastacembelus_armatus
ENSCVAG00000021145	si:ch211-153b23.4	64	32.510	ENSMAMG00000009328	si:ch211-153b23.3	58	32.510	Mastacembelus_armatus
ENSCVAG00000021145	si:ch211-153b23.4	99	85.393	ENSMAMG00000009277	si:ch211-153b23.4	96	85.393	Mastacembelus_armatus
ENSCVAG00000021145	si:ch211-153b23.4	64	33.333	ENSMZEG00005011450	si:ch211-153b23.3	57	33.143	Maylandia_zebra
ENSCVAG00000021145	si:ch211-153b23.4	100	81.491	ENSMZEG00005011433	si:ch211-153b23.4	99	81.491	Maylandia_zebra
ENSCVAG00000021145	si:ch211-153b23.4	99	60.772	ENSMGAG00000005478	-	97	60.772	Meleagris_gallopavo
ENSCVAG00000021145	si:ch211-153b23.4	100	82.236	ENSMMOG00000004425	si:ch211-153b23.4	100	82.236	Mola_mola
ENSCVAG00000021145	si:ch211-153b23.4	99	81.211	ENSNBRG00000013392	si:ch211-153b23.4	100	81.211	Neolamprologus_brichardi
ENSCVAG00000021145	si:ch211-153b23.4	64	33.333	ENSNBRG00000013370	si:ch211-153b23.3	57	33.143	Neolamprologus_brichardi
ENSCVAG00000021145	si:ch211-153b23.4	100	81.335	ENSONIG00000017875	si:ch211-153b23.4	93	81.335	Oreochromis_niloticus
ENSCVAG00000021145	si:ch211-153b23.4	99	81.931	ENSORLG00000006169	si:ch211-153b23.4	92	81.931	Oryzias_latipes
ENSCVAG00000021145	si:ch211-153b23.4	80	31.587	ENSORLG00000006161	si:ch211-153b23.3	76	31.437	Oryzias_latipes
ENSCVAG00000021145	si:ch211-153b23.4	99	82.302	ENSORLG00020009905	si:ch211-153b23.4	92	82.302	Oryzias_latipes_hni
ENSCVAG00000021145	si:ch211-153b23.4	77	30.564	ENSORLG00020000910	si:ch211-153b23.3	75	30.408	Oryzias_latipes_hni
ENSCVAG00000021145	si:ch211-153b23.4	77	30.469	ENSORLG00015003698	si:ch211-153b23.3	75	30.312	Oryzias_latipes_hsok
ENSCVAG00000021145	si:ch211-153b23.4	99	82.302	ENSORLG00015003709	si:ch211-153b23.4	92	82.302	Oryzias_latipes_hsok
ENSCVAG00000021145	si:ch211-153b23.4	80	31.222	ENSOMEG00000007661	si:ch211-153b23.3	76	30.781	Oryzias_melastigma
ENSCVAG00000021145	si:ch211-153b23.4	100	82.447	ENSOMEG00000007682	si:ch211-153b23.4	92	82.447	Oryzias_melastigma
ENSCVAG00000021145	si:ch211-153b23.4	100	70.494	ENSPKIG00000025681	si:ch211-153b23.4	94	70.494	Paramormyrops_kingsleyae
ENSCVAG00000021145	si:ch211-153b23.4	100	67.901	ENSPKIG00000014429	si:ch211-153b23.4	96	67.742	Paramormyrops_kingsleyae
ENSCVAG00000021145	si:ch211-153b23.4	95	66.060	ENSPMGG00000001313	si:ch211-153b23.4	88	65.866	Periophthalmus_magnuspinnatus
ENSCVAG00000021145	si:ch211-153b23.4	84	91.777	ENSPFOG00000012164	si:ch211-153b23.4	95	91.777	Poecilia_formosa
ENSCVAG00000021145	si:ch211-153b23.4	64	34.725	ENSPFOG00000012289	si:ch211-153b23.3	59	34.725	Poecilia_formosa
ENSCVAG00000021145	si:ch211-153b23.4	99	91.635	ENSPLAG00000016295	si:ch211-153b23.4	99	91.635	Poecilia_latipinna
ENSCVAG00000021145	si:ch211-153b23.4	80	30.422	ENSPLAG00000016320	si:ch211-153b23.3	74	30.422	Poecilia_latipinna
ENSCVAG00000021145	si:ch211-153b23.4	64	34.216	ENSPMEG00000008884	si:ch211-153b23.3	59	34.216	Poecilia_mexicana
ENSCVAG00000021145	si:ch211-153b23.4	97	89.258	ENSPMEG00000007538	si:ch211-153b23.4	95	89.258	Poecilia_mexicana
ENSCVAG00000021145	si:ch211-153b23.4	64	33.333	ENSPNYG00000000251	si:ch211-153b23.3	57	33.143	Pundamilia_nyererei
ENSCVAG00000021145	si:ch211-153b23.4	100	81.242	ENSPNYG00000000250	si:ch211-153b23.4	99	81.242	Pundamilia_nyererei
ENSCVAG00000021145	si:ch211-153b23.4	100	72.750	ENSPNAG00000019554	si:ch211-153b23.4	92	72.750	Pygocentrus_nattereri
ENSCVAG00000021145	si:ch211-153b23.4	77	31.142	ENSPNAG00000019592	si:ch211-153b23.3	74	30.422	Pygocentrus_nattereri
ENSCVAG00000021145	si:ch211-153b23.4	100	71.941	ENSSFOG00015010891	si:ch211-153b23.4	93	71.941	Scleropages_formosus
ENSCVAG00000021145	si:ch211-153b23.4	51	37.321	ENSSFOG00015009030	-	65	37.081	Scleropages_formosus
ENSCVAG00000021145	si:ch211-153b23.4	100	68.088	ENSSFOG00015003920	-	93	68.088	Scleropages_formosus
ENSCVAG00000021145	si:ch211-153b23.4	100	81.953	ENSSMAG00000010067	si:ch211-153b23.4	94	81.953	Scophthalmus_maximus
ENSCVAG00000021145	si:ch211-153b23.4	54	34.658	ENSSMAG00000005446	si:ch211-153b23.3	51	34.513	Scophthalmus_maximus
ENSCVAG00000021145	si:ch211-153b23.4	83	82.712	ENSSDUG00000006931	si:ch211-153b23.4	92	82.712	Seriola_dumerili
ENSCVAG00000021145	si:ch211-153b23.4	86	83.774	ENSSDUG00000006842	si:ch211-153b23.4	88	81.887	Seriola_dumerili
ENSCVAG00000021145	si:ch211-153b23.4	100	84.224	ENSSDUG00000006671	si:ch211-153b23.4	100	84.224	Seriola_dumerili
ENSCVAG00000021145	si:ch211-153b23.4	54	35.294	ENSSLDG00000008629	si:ch211-153b23.3	52	35.294	Seriola_lalandi_dorsalis
ENSCVAG00000021145	si:ch211-153b23.4	99	59.776	ENSTGUG00000005499	-	98	59.776	Taeniopygia_guttata
ENSCVAG00000021145	si:ch211-153b23.4	99	79.404	ENSTRUG00000003247	si:ch211-153b23.4	100	79.404	Takifugu_rubripes
ENSCVAG00000021145	si:ch211-153b23.4	64	32.375	ENSTRUG00000020530	si:ch211-153b23.3	75	30.197	Takifugu_rubripes
ENSCVAG00000021145	si:ch211-153b23.4	64	31.619	ENSTNIG00000008962	si:ch211-153b23.3	56	31.166	Tetraodon_nigroviridis
ENSCVAG00000021145	si:ch211-153b23.4	100	77.778	ENSTNIG00000008958	si:ch211-153b23.4	97	77.778	Tetraodon_nigroviridis
ENSCVAG00000021145	si:ch211-153b23.4	100	55.795	ENSXETG00000004489	-	91	55.795	Xenopus_tropicalis
ENSCVAG00000021145	si:ch211-153b23.4	99	91.418	ENSXMAG00000009416	-	95	91.418	Xiphophorus_maculatus
ENSCVAG00000021145	si:ch211-153b23.4	99	91.294	ENSXMAG00000021388	si:ch211-153b23.4	97	91.347	Xiphophorus_maculatus