EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000021809 (Gene tree)
Gene ID: 107094685
Gene Symbol: rtca
Alias: cb158|rtcd1|sb:cb158|wu:fc62c03
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 6566 bases
Position: chrKL653001.1:258741-265306
Accession: 107094685
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000018513	RTC	PF01137.21	2.6e-48	1	2
ENSCVAP00000018513	RTC	PF01137.21	2.6e-48	2	2
ENSCVAP00000018513	RTC_insert	PF05189.13	2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000027479	-	1038	XM_015390464	ENSCVAP00000018513	345 (aa)	XP_015245950	-

Gene Model

Click here to download ENSCVAG00000021809's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000021809's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000021809	rtca	100	58.470	ENSG00000137996	RTCA	100	69.388	Homo_sapiens
ENSCVAG00000021809	rtca	100	72.951	ENSAPOG00000001345	rtca	99	72.951	Acanthochromis_polyacanthus
ENSCVAG00000021809	rtca	72	68.045	ENSAMEG00000008855	RTCA	99	68.045	Ailuropoda_melanoleuca
ENSCVAG00000021809	rtca	100	74.044	ENSACIG00000019643	rtca	100	74.044	Amphilophus_citrinellus
ENSCVAG00000021809	rtca	100	73.770	ENSAOCG00000014979	rtca	99	73.770	Amphiprion_ocellaris
ENSCVAG00000021809	rtca	100	73.770	ENSAPEG00000006945	rtca	99	73.770	Amphiprion_percula
ENSCVAG00000021809	rtca	96	73.164	ENSATEG00000006315	rtca	96	73.164	Anabas_testudineus
ENSCVAG00000021809	rtca	96	54.775	ENSAPLG00000015430	RTCA	100	54.775	Anas_platyrhynchos
ENSCVAG00000021809	rtca	100	59.290	ENSANAG00000025446	RTCA	100	59.290	Aotus_nancymaae
ENSCVAG00000021809	rtca	100	72.404	ENSACLG00000020770	rtca	99	72.404	Astatotilapia_calliptera
ENSCVAG00000021809	rtca	100	64.754	ENSAMXG00000043271	rtca	100	64.754	Astyanax_mexicanus
ENSCVAG00000021809	rtca	100	60.109	ENSBTAG00000006321	RTCA	100	60.109	Bos_taurus
ENSCVAG00000021809	rtca	100	59.290	ENSCJAG00000003398	RTCA	100	59.290	Callithrix_jacchus
ENSCVAG00000021809	rtca	100	59.563	ENSCAFG00000020010	RTCA	68	59.563	Canis_familiaris
ENSCVAG00000021809	rtca	100	59.563	ENSCAFG00020011528	RTCA	57	59.563	Canis_lupus_dingo
ENSCVAG00000021809	rtca	100	59.836	ENSCHIG00000018937	RTCA	100	59.836	Capra_hircus
ENSCVAG00000021809	rtca	100	59.290	ENSTSYG00000011305	RTCA	100	59.290	Carlito_syrichta
ENSCVAG00000021809	rtca	100	58.470	ENSCCAG00000021844	RTCA	100	58.470	Cebus_capucinus
ENSCVAG00000021809	rtca	100	57.256	ENSCATG00000019364	RTCA	100	57.256	Cercocebus_atys
ENSCVAG00000021809	rtca	66	75.771	ENSCLAG00000006125	RTCA	72	75.771	Chinchilla_lanigera
ENSCVAG00000021809	rtca	100	59.290	ENSCSAG00000001509	RTCA	100	59.290	Chlorocebus_sabaeus
ENSCVAG00000021809	rtca	100	57.609	ENSCHOG00000005211	RTCA	100	57.609	Choloepus_hoffmanni
ENSCVAG00000021809	rtca	100	55.200	ENSCPBG00000026658	RTCA	100	55.200	Chrysemys_picta_bellii
ENSCVAG00000021809	rtca	98	45.000	ENSCING00000007875	-	98	45.000	Ciona_intestinalis
ENSCVAG00000021809	rtca	98	45.429	ENSCSAVG00000007269	-	98	45.429	Ciona_savignyi
ENSCVAG00000021809	rtca	100	59.290	ENSCANG00000040106	RTCA	100	59.290	Colobus_angolensis_palliatus
ENSCVAG00000021809	rtca	66	74.123	ENSCGRG00001013163	Rtca	72	74.123	Cricetulus_griseus_chok1gshd
ENSCVAG00000021809	rtca	98	69.863	ENSCSEG00000000530	rtca	96	69.863	Cynoglossus_semilaevis
ENSCVAG00000021809	rtca	100	65.659	ENSDARG00000002215	rtca	100	65.659	Danio_rerio
ENSCVAG00000021809	rtca	100	58.743	ENSDNOG00000000456	RTCA	100	58.743	Dasypus_novemcinctus
ENSCVAG00000021809	rtca	100	59.016	ENSDORG00000005448	Rtca	100	59.016	Dipodomys_ordii
ENSCVAG00000021809	rtca	98	35.278	FBgn0025630	Rtca	98	35.278	Drosophila_melanogaster
ENSCVAG00000021809	rtca	94	41.040	ENSEBUG00000008556	rtca	95	41.040	Eptatretus_burgeri
ENSCVAG00000021809	rtca	100	60.109	ENSEASG00005015926	RTCA	100	60.109	Equus_asinus_asinus
ENSCVAG00000021809	rtca	100	60.109	ENSECAG00000019831	RTCA	100	60.109	Equus_caballus
ENSCVAG00000021809	rtca	91	52.023	ENSEEUG00000001165	RTCA	100	52.023	Erinaceus_europaeus
ENSCVAG00000021809	rtca	99	63.661	ENSELUG00000003741	rtca	99	63.661	Esox_lucius
ENSCVAG00000021809	rtca	100	59.836	ENSFCAG00000024460	RTCA	100	59.836	Felis_catus
ENSCVAG00000021809	rtca	93	53.913	ENSFALG00000002443	RTCA	91	53.913	Ficedula_albicollis
ENSCVAG00000021809	rtca	100	57.923	ENSFDAG00000012070	-	100	57.923	Fukomys_damarensis
ENSCVAG00000021809	rtca	97	47.911	ENSFDAG00000016084	-	98	47.911	Fukomys_damarensis
ENSCVAG00000021809	rtca	63	92.166	ENSFHEG00000002868	rtca	93	88.426	Fundulus_heteroclitus
ENSCVAG00000021809	rtca	100	66.940	ENSGMOG00000013264	rtca	100	66.940	Gadus_morhua
ENSCVAG00000021809	rtca	100	55.707	ENSGALG00000005277	RTCA	100	55.707	Gallus_gallus
ENSCVAG00000021809	rtca	100	74.044	ENSGAFG00000011853	rtca	99	74.044	Gambusia_affinis
ENSCVAG00000021809	rtca	100	70.219	ENSGACG00000013497	rtca	100	70.219	Gasterosteus_aculeatus
ENSCVAG00000021809	rtca	79	52.365	ENSGAGG00000023306	RTCA	100	52.365	Gopherus_agassizii
ENSCVAG00000021809	rtca	100	58.470	ENSGGOG00000009546	-	100	58.470	Gorilla_gorilla
ENSCVAG00000021809	rtca	100	58.197	ENSGGOG00000044018	-	100	58.197	Gorilla_gorilla
ENSCVAG00000021809	rtca	100	72.404	ENSHBUG00000002114	rtca	99	72.404	Haplochromis_burtoni
ENSCVAG00000021809	rtca	100	58.197	ENSHGLG00000002617	RTCA	100	58.197	Heterocephalus_glaber_female
ENSCVAG00000021809	rtca	100	58.197	ENSHGLG00100006056	RTCA	100	58.197	Heterocephalus_glaber_male
ENSCVAG00000021809	rtca	100	60.548	ENSHCOG00000020628	rtca	89	60.548	Hippocampus_comes
ENSCVAG00000021809	rtca	100	65.574	ENSIPUG00000024803	rtca	100	65.574	Ictalurus_punctatus
ENSCVAG00000021809	rtca	100	51.771	ENSSTOG00000033099	-	100	51.771	Ictidomys_tridecemlineatus
ENSCVAG00000021809	rtca	66	76.754	ENSSTOG00000013528	-	67	76.754	Ictidomys_tridecemlineatus
ENSCVAG00000021809	rtca	100	49.422	ENSJJAG00000016178	Rtca	100	49.422	Jaculus_jaculus
ENSCVAG00000021809	rtca	100	72.900	ENSKMAG00000006651	rtca	99	72.900	Kryptolebias_marmoratus
ENSCVAG00000021809	rtca	66	87.225	ENSLBEG00000002448	-	71	87.225	Labrus_bergylta
ENSCVAG00000021809	rtca	99	70.799	ENSLBEG00000028971	rtca	99	70.799	Labrus_bergylta
ENSCVAG00000021809	rtca	100	56.403	ENSLACG00000013666	RTCA	100	56.403	Latimeria_chalumnae
ENSCVAG00000021809	rtca	100	61.622	ENSLOCG00000000093	rtca	99	61.622	Lepisosteus_oculatus
ENSCVAG00000021809	rtca	99	58.424	ENSLAFG00000001473	RTCA	99	58.424	Loxodonta_africana
ENSCVAG00000021809	rtca	100	59.290	ENSMFAG00000034132	RTCA	100	59.290	Macaca_fascicularis
ENSCVAG00000021809	rtca	100	59.290	ENSMMUG00000019105	RTCA	100	59.290	Macaca_mulatta
ENSCVAG00000021809	rtca	66	75.439	ENSMNEG00000037163	RTCA	74	75.439	Macaca_nemestrina
ENSCVAG00000021809	rtca	100	53.824	ENSMLEG00000042151	RTCA	100	53.824	Mandrillus_leucophaeus
ENSCVAG00000021809	rtca	100	74.863	ENSMAMG00000016536	rtca	100	74.863	Mastacembelus_armatus
ENSCVAG00000021809	rtca	100	72.404	ENSMZEG00005017945	rtca	99	72.404	Maylandia_zebra
ENSCVAG00000021809	rtca	66	70.044	ENSMGAG00000006892	RTCA	71	70.044	Meleagris_gallopavo
ENSCVAG00000021809	rtca	100	59.290	ENSMAUG00000008488	Rtca	100	59.290	Mesocricetus_auratus
ENSCVAG00000021809	rtca	66	76.316	ENSMICG00000008643	RTCA	74	76.316	Microcebus_murinus
ENSCVAG00000021809	rtca	100	58.197	ENSMOCG00000016660	Rtca	100	58.197	Microtus_ochrogaster
ENSCVAG00000021809	rtca	66	90.708	ENSMMOG00000007750	rtca	74	90.708	Mola_mola
ENSCVAG00000021809	rtca	100	59.016	ENSMODG00000003557	RTCA	100	59.016	Monodelphis_domestica
ENSCVAG00000021809	rtca	100	74.863	ENSMALG00000020844	rtca	100	74.863	Monopterus_albus
ENSCVAG00000021809	rtca	100	58.197	MGP_CAROLIEiJ_G0025565	Rtca	92	66.667	Mus_caroli
ENSCVAG00000021809	rtca	100	57.923	ENSMUSG00000000339	Rtca	92	66.667	Mus_musculus
ENSCVAG00000021809	rtca	100	58.197	MGP_PahariEiJ_G0027011	Rtca	92	66.667	Mus_pahari
ENSCVAG00000021809	rtca	100	57.880	MGP_SPRETEiJ_G0026515	Rtca	92	66.667	Mus_spretus
ENSCVAG00000021809	rtca	100	59.836	ENSMPUG00000012119	RTCA	100	59.836	Mustela_putorius_furo
ENSCVAG00000021809	rtca	100	55.858	ENSMLUG00000009922	RTCA	100	55.858	Myotis_lucifugus
ENSCVAG00000021809	rtca	100	58.743	ENSNGAG00000011540	Rtca	99	58.743	Nannospalax_galili
ENSCVAG00000021809	rtca	100	72.131	ENSNBRG00000003062	rtca	99	72.131	Neolamprologus_brichardi
ENSCVAG00000021809	rtca	100	58.743	ENSNLEG00000031426	RTCA	100	58.743	Nomascus_leucogenys
ENSCVAG00000021809	rtca	66	71.053	ENSOPRG00000012092	RTCA	60	71.053	Ochotona_princeps
ENSCVAG00000021809	rtca	95	58.333	ENSODEG00000006990	RTCA	96	58.689	Octodon_degus
ENSCVAG00000021809	rtca	100	72.131	ENSONIG00000007753	rtca	99	72.131	Oreochromis_niloticus
ENSCVAG00000021809	rtca	66	75.000	ENSOANG00000012055	RTCA	70	75.000	Ornithorhynchus_anatinus
ENSCVAG00000021809	rtca	100	59.290	ENSOCUG00000014247	RTCA	100	59.290	Oryctolagus_cuniculus
ENSCVAG00000021809	rtca	100	73.098	ENSORLG00000013605	rtca	100	73.098	Oryzias_latipes
ENSCVAG00000021809	rtca	100	73.370	ENSORLG00020001904	rtca	100	73.370	Oryzias_latipes_hni
ENSCVAG00000021809	rtca	100	73.098	ENSORLG00015021064	rtca	100	73.098	Oryzias_latipes_hsok
ENSCVAG00000021809	rtca	100	73.770	ENSOMEG00000000756	rtca	100	73.770	Oryzias_melastigma
ENSCVAG00000021809	rtca	100	59.946	ENSOGAG00000005627	RTCA	100	59.946	Otolemur_garnettii
ENSCVAG00000021809	rtca	67	74.569	ENSOARG00000018122	RTCA	73	74.569	Ovis_aries
ENSCVAG00000021809	rtca	100	55.937	ENSPPAG00000035119	RTCA	100	55.937	Pan_paniscus
ENSCVAG00000021809	rtca	100	59.563	ENSPPRG00000000350	RTCA	100	59.563	Panthera_pardus
ENSCVAG00000021809	rtca	100	59.563	ENSPTIG00000012816	RTCA	100	59.563	Panthera_tigris_altaica
ENSCVAG00000021809	rtca	100	55.937	ENSPTRG00000001004	RTCA	100	55.937	Pan_troglodytes
ENSCVAG00000021809	rtca	100	59.563	ENSPANG00000000346	RTCA	100	59.563	Papio_anubis
ENSCVAG00000021809	rtca	100	65.405	ENSPKIG00000001653	rtca	100	65.405	Paramormyrops_kingsleyae
ENSCVAG00000021809	rtca	100	55.978	ENSPSIG00000011408	RTCA	100	55.978	Pelodiscus_sinensis
ENSCVAG00000021809	rtca	100	58.470	ENSPEMG00000018582	Rtca	100	58.470	Peromyscus_maniculatus_bairdii
ENSCVAG00000021809	rtca	99	45.455	ENSPMAG00000009110	rtca	98	45.455	Petromyzon_marinus
ENSCVAG00000021809	rtca	100	59.290	ENSPCIG00000007684	RTCA	100	59.290	Phascolarctos_cinereus
ENSCVAG00000021809	rtca	100	74.932	ENSPFOG00000004824	rtca	100	74.932	Poecilia_formosa
ENSCVAG00000021809	rtca	100	74.863	ENSPLAG00000011753	rtca	99	74.863	Poecilia_latipinna
ENSCVAG00000021809	rtca	100	74.863	ENSPMEG00000020469	rtca	99	74.863	Poecilia_mexicana
ENSCVAG00000021809	rtca	100	74.590	ENSPREG00000001365	rtca	99	74.590	Poecilia_reticulata
ENSCVAG00000021809	rtca	100	59.016	ENSPPYG00000001115	RTCA	100	59.016	Pongo_abelii
ENSCVAG00000021809	rtca	100	56.284	ENSPCAG00000005076	RTCA	100	56.284	Procavia_capensis
ENSCVAG00000021809	rtca	100	59.836	ENSPCOG00000005603	RTCA	100	59.836	Propithecus_coquereli
ENSCVAG00000021809	rtca	100	56.992	ENSPVAG00000009478	RTCA	100	56.992	Pteropus_vampyrus
ENSCVAG00000021809	rtca	100	72.404	ENSPNYG00000004722	rtca	99	72.404	Pundamilia_nyererei
ENSCVAG00000021809	rtca	100	65.385	ENSPNAG00000022270	rtca	100	65.385	Pygocentrus_nattereri
ENSCVAG00000021809	rtca	100	57.923	ENSRNOG00000014575	Rtca	100	57.923	Rattus_norvegicus
ENSCVAG00000021809	rtca	100	56.464	ENSRBIG00000041180	RTCA	100	56.464	Rhinopithecus_bieti
ENSCVAG00000021809	rtca	100	59.016	ENSRROG00000024929	RTCA	100	59.016	Rhinopithecus_roxellana
ENSCVAG00000021809	rtca	100	58.470	ENSSBOG00000028626	RTCA	100	58.470	Saimiri_boliviensis_boliviensis
ENSCVAG00000021809	rtca	100	59.290	ENSSHAG00000001758	RTCA	100	59.290	Sarcophilus_harrisii
ENSCVAG00000021809	rtca	99	69.146	ENSSMAG00000014680	rtca	98	69.146	Scophthalmus_maximus
ENSCVAG00000021809	rtca	98	73.056	ENSSDUG00000015585	rtca	98	72.802	Seriola_dumerili
ENSCVAG00000021809	rtca	96	72.650	ENSSLDG00000018985	rtca	95	72.650	Seriola_lalandi_dorsalis
ENSCVAG00000021809	rtca	66	69.697	ENSSARG00000013993	RTCA	73	69.697	Sorex_araneus
ENSCVAG00000021809	rtca	100	72.951	ENSSPAG00000011938	rtca	99	72.951	Stegastes_partitus
ENSCVAG00000021809	rtca	100	59.563	ENSSSCG00000006865	RTCA	100	59.563	Sus_scrofa
ENSCVAG00000021809	rtca	100	56.522	ENSTGUG00000005154	RTCA	100	56.522	Taeniopygia_guttata
ENSCVAG00000021809	rtca	100	72.131	ENSTRUG00000008799	rtca	100	72.131	Takifugu_rubripes
ENSCVAG00000021809	rtca	100	71.585	ENSTNIG00000004725	rtca	100	71.585	Tetraodon_nigroviridis
ENSCVAG00000021809	rtca	100	57.784	ENSTTRG00000015327	RTCA	100	57.784	Tursiops_truncatus
ENSCVAG00000021809	rtca	94	57.726	ENSUAMG00000017265	RTCA	96	57.726	Ursus_americanus
ENSCVAG00000021809	rtca	100	59.290	ENSUMAG00000007881	RTCA	100	59.290	Ursus_maritimus
ENSCVAG00000021809	rtca	67	63.793	ENSVPAG00000001039	RTCA	61	63.793	Vicugna_pacos
ENSCVAG00000021809	rtca	100	59.563	ENSVVUG00000022041	RTCA	68	59.563	Vulpes_vulpes
ENSCVAG00000021809	rtca	99	44.565	ENSXETG00000031661	RTCA	99	44.565	Xenopus_tropicalis
ENSCVAG00000021809	rtca	100	62.842	ENSXCOG00000008002	rtca	100	62.842	Xiphophorus_couchianus
ENSCVAG00000021809	rtca	100	74.590	ENSXMAG00000005482	rtca	99	74.590	Xiphophorus_maculatus