EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000021828 (Gene tree)
Gene ID: 107098670
Gene Symbol: lsm4 (1 of many)
Alias: zgc:73057|zgc:77848
Full Name: U6 snRNA-associated Sm-like protein LSm4
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 2105 bases
Position: chrKL653299.1:10600-12704
Accession: 107098670
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000018552	LSM	PF01423.22	2.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000032770	-	396	XM_015396454	ENSCVAP00000018552	131 (aa)	XP_015251940	-

Gene Model

Click here to download ENSCVAG00000021828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000021828's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000021828	lsm4	98	100.000	ENSCVAG00000010601	lsm4	90	100.000
ENSCVAG00000021828	lsm4	63	32.558	ENSCVAG00000015394	si:ch73-14h10.2	59	36.923

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000021828	lsm4	56	97.260	ENSG00000130520	LSM4	98	74.797	Homo_sapiens
ENSCVAG00000021828	lsm4	98	88.235	ENSAPOG00000005643	lsm4	90	88.235	Acanthochromis_polyacanthus
ENSCVAG00000021828	lsm4	56	97.260	ENSAMEG00000011162	LSM4	84	74.797	Ailuropoda_melanoleuca
ENSCVAG00000021828	lsm4	98	90.226	ENSAOCG00000006414	lsm4	90	90.226	Amphiprion_ocellaris
ENSCVAG00000021828	lsm4	98	89.552	ENSAPEG00000006238	lsm4	90	89.552	Amphiprion_percula
ENSCVAG00000021828	lsm4	98	88.321	ENSATEG00000016559	lsm4	90	88.321	Anabas_testudineus
ENSCVAG00000021828	lsm4	56	97.260	ENSANAG00000034659	LSM4	98	76.423	Aotus_nancymaae
ENSCVAG00000021828	lsm4	98	90.909	ENSACLG00000022738	lsm4	90	90.909	Astatotilapia_calliptera
ENSCVAG00000021828	lsm4	98	89.922	ENSAMXG00000016932	lsm4	89	89.147	Astyanax_mexicanus
ENSCVAG00000021828	lsm4	56	97.260	ENSBTAG00000008578	LSM4	88	74.797	Bos_taurus
ENSCVAG00000021828	lsm4	53	71.014	WBGene00003078	lsm-4	71	62.069	Caenorhabditis_elegans
ENSCVAG00000021828	lsm4	56	97.260	ENSCJAG00000014171	LSM4	98	74.797	Callithrix_jacchus
ENSCVAG00000021828	lsm4	56	97.260	ENSCAFG00000014900	LSM4	80	74.797	Canis_familiaris
ENSCVAG00000021828	lsm4	56	97.260	ENSCAFG00020012137	LSM4	88	74.797	Canis_lupus_dingo
ENSCVAG00000021828	lsm4	56	97.260	ENSCHIG00000010928	LSM4	81	74.797	Capra_hircus
ENSCVAG00000021828	lsm4	56	95.890	ENSTSYG00000030906	LSM4	98	73.984	Carlito_syrichta
ENSCVAG00000021828	lsm4	56	95.890	ENSCAPG00000014140	LSM4	86	75.000	Cavia_aperea
ENSCVAG00000021828	lsm4	56	95.890	ENSCPOG00000024117	LSM4	86	75.000	Cavia_porcellus
ENSCVAG00000021828	lsm4	56	97.260	ENSCCAG00000036308	LSM4	98	74.797	Cebus_capucinus
ENSCVAG00000021828	lsm4	56	97.260	ENSCATG00000029311	LSM4	98	76.423	Cercocebus_atys
ENSCVAG00000021828	lsm4	94	73.984	ENSCLAG00000010828	LSM4	88	73.984	Chinchilla_lanigera
ENSCVAG00000021828	lsm4	56	97.260	ENSCSAG00000005370	LSM4	88	74.797	Chlorocebus_sabaeus
ENSCVAG00000021828	lsm4	56	98.630	ENSCPBG00000012925	LSM4	86	81.818	Chrysemys_picta_bellii
ENSCVAG00000021828	lsm4	55	93.056	ENSCING00000007519	-	61	93.506	Ciona_intestinalis
ENSCVAG00000021828	lsm4	55	93.056	ENSCSAVG00000008596	-	66	87.805	Ciona_savignyi
ENSCVAG00000021828	lsm4	56	97.260	ENSCANG00000043686	LSM4	98	76.423	Colobus_angolensis_palliatus
ENSCVAG00000021828	lsm4	56	94.521	ENSCGRG00001014436	Lsm4	88	72.358	Cricetulus_griseus_chok1gshd
ENSCVAG00000021828	lsm4	56	94.521	ENSCGRG00000009398	Lsm4	88	72.358	Cricetulus_griseus_crigri
ENSCVAG00000021828	lsm4	98	82.812	ENSCSEG00000016127	lsm4	89	94.531	Cynoglossus_semilaevis
ENSCVAG00000021828	lsm4	93	85.271	ENSDARG00000023852	lsm4	98	79.528	Danio_rerio
ENSCVAG00000021828	lsm4	56	97.260	ENSDORG00000024225	Lsm4	88	74.797	Dipodomys_ordii
ENSCVAG00000021828	lsm4	65	78.824	FBgn0032240	CG17768	53	79.268	Drosophila_melanogaster
ENSCVAG00000021828	lsm4	56	95.890	ENSETEG00000007762	-	98	74.400	Echinops_telfairi
ENSCVAG00000021828	lsm4	56	97.260	ENSECAG00000010141	LSM4	50	74.797	Equus_caballus
ENSCVAG00000021828	lsm4	91	90.756	ENSELUG00000012821	lsm4	89	90.756	Esox_lucius
ENSCVAG00000021828	lsm4	56	97.260	ENSFCAG00000040580	LSM4	98	74.797	Felis_catus
ENSCVAG00000021828	lsm4	56	98.630	ENSFALG00000009478	LSM4	86	80.992	Ficedula_albicollis
ENSCVAG00000021828	lsm4	56	97.260	ENSFDAG00000010124	LSM4	88	74.797	Fukomys_damarensis
ENSCVAG00000021828	lsm4	98	80.451	ENSGMOG00000007729	lsm4	90	78.358	Gadus_morhua
ENSCVAG00000021828	lsm4	56	98.630	ENSGALG00000003385	LSM4	86	80.992	Gallus_gallus
ENSCVAG00000021828	lsm4	98	95.312	ENSGAFG00000004903	lsm4	97	93.750	Gambusia_affinis
ENSCVAG00000021828	lsm4	98	82.963	ENSGACG00000008140	lsm4	90	84.444	Gasterosteus_aculeatus
ENSCVAG00000021828	lsm4	56	98.630	ENSGAGG00000017812	LSM4	86	81.818	Gopherus_agassizii
ENSCVAG00000021828	lsm4	56	97.260	ENSGGOG00000012914	-	98	76.423	Gorilla_gorilla
ENSCVAG00000021828	lsm4	98	91.603	ENSHBUG00000008858	lsm4	72	91.603	Haplochromis_burtoni
ENSCVAG00000021828	lsm4	94	74.797	ENSHGLG00000006568	LSM4	88	74.797	Heterocephalus_glaber_female
ENSCVAG00000021828	lsm4	60	96.154	ENSHGLG00100007894	LSM4	84	96.154	Heterocephalus_glaber_male
ENSCVAG00000021828	lsm4	98	94.531	ENSHCOG00000008819	lsm4	89	94.531	Hippocampus_comes
ENSCVAG00000021828	lsm4	98	89.147	ENSIPUG00000005368	Lsm4	89	88.372	Ictalurus_punctatus
ENSCVAG00000021828	lsm4	56	97.260	ENSSTOG00000016494	LSM4	88	74.797	Ictidomys_tridecemlineatus
ENSCVAG00000021828	lsm4	56	94.521	ENSJJAG00000017420	Lsm4	88	73.171	Jaculus_jaculus
ENSCVAG00000021828	lsm4	98	94.574	ENSKMAG00000005073	lsm4	90	94.574	Kryptolebias_marmoratus
ENSCVAG00000021828	lsm4	98	89.552	ENSLBEG00000027930	lsm4	90	89.552	Labrus_bergylta
ENSCVAG00000021828	lsm4	94	80.800	ENSLACG00000015861	LSM4	89	81.890	Latimeria_chalumnae
ENSCVAG00000021828	lsm4	85	91.150	ENSLOCG00000002025	lsm4	89	86.047	Lepisosteus_oculatus
ENSCVAG00000021828	lsm4	56	95.890	ENSLAFG00000017459	LSM4	88	74.400	Loxodonta_africana
ENSCVAG00000021828	lsm4	56	97.260	ENSMFAG00000031194	LSM4	98	76.423	Macaca_fascicularis
ENSCVAG00000021828	lsm4	56	97.260	ENSMMUG00000004405	LSM4	98	74.797	Macaca_mulatta
ENSCVAG00000021828	lsm4	56	97.260	ENSMNEG00000042899	LSM4	98	76.423	Macaca_nemestrina
ENSCVAG00000021828	lsm4	56	97.260	ENSMLEG00000027948	LSM4	98	76.423	Mandrillus_leucophaeus
ENSCVAG00000021828	lsm4	98	92.969	ENSMAMG00000006190	lsm4	89	92.969	Mastacembelus_armatus
ENSCVAG00000021828	lsm4	98	91.603	ENSMZEG00005016420	lsm4	90	91.603	Maylandia_zebra
ENSCVAG00000021828	lsm4	92	76.230	ENSMGAG00000004976	LSM4	86	79.508	Meleagris_gallopavo
ENSCVAG00000021828	lsm4	64	94.048	ENSMICG00000000222	LSM4	98	73.984	Microcebus_murinus
ENSCVAG00000021828	lsm4	56	94.521	ENSMOCG00000020861	Lsm4	88	73.171	Microtus_ochrogaster
ENSCVAG00000021828	lsm4	56	98.630	ENSMODG00000015044	-	98	76.000	Monodelphis_domestica
ENSCVAG00000021828	lsm4	98	92.969	ENSMALG00000018159	lsm4	90	92.969	Monopterus_albus
ENSCVAG00000021828	lsm4	56	94.521	MGP_CAROLIEiJ_G0031158	Lsm4	88	73.171	Mus_caroli
ENSCVAG00000021828	lsm4	56	94.521	ENSMUSG00000031848	Lsm4	80	85.714	Mus_musculus
ENSCVAG00000021828	lsm4	56	94.521	MGP_PahariEiJ_G0021623	Lsm4	88	73.171	Mus_pahari
ENSCVAG00000021828	lsm4	56	94.521	MGP_SPRETEiJ_G0032276	Lsm4	88	73.171	Mus_spretus
ENSCVAG00000021828	lsm4	56	97.260	ENSMPUG00000015589	LSM4	88	74.797	Mustela_putorius_furo
ENSCVAG00000021828	lsm4	56	97.260	ENSMLUG00000004010	LSM4	88	74.797	Myotis_lucifugus
ENSCVAG00000021828	lsm4	56	94.521	ENSNGAG00000008644	Lsm4	92	73.171	Nannospalax_galili
ENSCVAG00000021828	lsm4	64	97.619	ENSNBRG00000022150	lsm4	52	97.619	Neolamprologus_brichardi
ENSCVAG00000021828	lsm4	56	94.521	ENSMEUG00000013229	LSM4	98	72.000	Notamacropus_eugenii
ENSCVAG00000021828	lsm4	59	97.403	ENSOPRG00000005575	LSM4	98	74.797	Ochotona_princeps
ENSCVAG00000021828	lsm4	94	74.797	ENSODEG00000020549	-	88	74.797	Octodon_degus
ENSCVAG00000021828	lsm4	56	86.301	ENSODEG00000004519	-	87	66.667	Octodon_degus
ENSCVAG00000021828	lsm4	98	90.909	ENSONIG00000012724	lsm4	90	90.909	Oreochromis_niloticus
ENSCVAG00000021828	lsm4	57	97.333	ENSOANG00000007434	LSM4	74	95.349	Ornithorhynchus_anatinus
ENSCVAG00000021828	lsm4	98	92.248	ENSORLG00000008391	lsm4	90	92.248	Oryzias_latipes
ENSCVAG00000021828	lsm4	98	92.248	ENSORLG00020014829	lsm4	90	92.248	Oryzias_latipes_hni
ENSCVAG00000021828	lsm4	98	91.473	ENSORLG00015010205	lsm4	90	91.473	Oryzias_latipes_hsok
ENSCVAG00000021828	lsm4	98	92.248	ENSOMEG00000003606	lsm4	90	92.248	Oryzias_melastigma
ENSCVAG00000021828	lsm4	64	94.048	ENSOGAG00000027992	LSM4	90	69.466	Otolemur_garnettii
ENSCVAG00000021828	lsm4	56	97.260	ENSOARG00000012553	LSM4	94	76.033	Ovis_aries
ENSCVAG00000021828	lsm4	56	97.260	ENSPPAG00000044045	-	98	76.423	Pan_paniscus
ENSCVAG00000021828	lsm4	56	97.260	ENSPPRG00000018264	LSM4	98	74.797	Panthera_pardus
ENSCVAG00000021828	lsm4	56	97.260	ENSPTIG00000006306	LSM4	88	74.797	Panthera_tigris_altaica
ENSCVAG00000021828	lsm4	56	97.260	ENSPTRG00000031470	LSM4	98	76.423	Pan_troglodytes
ENSCVAG00000021828	lsm4	56	97.260	ENSPANG00000014399	LSM4	98	74.797	Papio_anubis
ENSCVAG00000021828	lsm4	100	87.121	ENSPKIG00000006154	lsm4	100	87.121	Paramormyrops_kingsleyae
ENSCVAG00000021828	lsm4	56	98.630	ENSPSIG00000012358	LSM4	86	80.992	Pelodiscus_sinensis
ENSCVAG00000021828	lsm4	56	94.521	ENSPEMG00000001358	Lsm4	88	73.171	Peromyscus_maniculatus_bairdii
ENSCVAG00000021828	lsm4	98	94.531	ENSPFOG00000000570	lsm4	68	94.531	Poecilia_formosa
ENSCVAG00000021828	lsm4	98	94.531	ENSPLAG00000016267	lsm4	90	94.531	Poecilia_latipinna
ENSCVAG00000021828	lsm4	98	94.531	ENSPMEG00000016378	lsm4	90	94.531	Poecilia_mexicana
ENSCVAG00000021828	lsm4	98	95.312	ENSPREG00000011290	lsm4	68	95.312	Poecilia_reticulata
ENSCVAG00000021828	lsm4	56	97.260	ENSPPYG00000009736	LSM4	88	74.797	Pongo_abelii
ENSCVAG00000021828	lsm4	56	95.890	ENSPCAG00000008513	LSM4	98	74.400	Procavia_capensis
ENSCVAG00000021828	lsm4	64	94.048	ENSPCOG00000019837	LSM4	98	73.984	Propithecus_coquereli
ENSCVAG00000021828	lsm4	56	97.260	ENSPVAG00000015383	LSM4	88	74.797	Pteropus_vampyrus
ENSCVAG00000021828	lsm4	98	91.603	ENSPNYG00000016794	lsm4	90	91.603	Pundamilia_nyererei
ENSCVAG00000021828	lsm4	93	91.803	ENSPNAG00000016598	lsm4	90	91.803	Pygocentrus_nattereri
ENSCVAG00000021828	lsm4	56	94.521	ENSRNOG00000019572	Lsm4	88	73.171	Rattus_norvegicus
ENSCVAG00000021828	lsm4	56	97.260	ENSRBIG00000024717	LSM4	98	76.423	Rhinopithecus_bieti
ENSCVAG00000021828	lsm4	56	97.260	ENSRROG00000045706	LSM4	98	76.423	Rhinopithecus_roxellana
ENSCVAG00000021828	lsm4	56	97.260	ENSSBOG00000022455	LSM4	98	74.797	Saimiri_boliviensis_boliviensis
ENSCVAG00000021828	lsm4	56	98.630	ENSSHAG00000011559	LSM4	88	76.000	Sarcophilus_harrisii
ENSCVAG00000021828	lsm4	98	89.922	ENSSFOG00015021067	lsm4	89	89.922	Scleropages_formosus
ENSCVAG00000021828	lsm4	98	73.333	ENSSMAG00000021020	lsm4	90	84.444	Scophthalmus_maximus
ENSCVAG00000021828	lsm4	98	79.605	ENSSDUG00000009588	lsm4	91	79.605	Seriola_dumerili
ENSCVAG00000021828	lsm4	98	79.085	ENSSLDG00000006827	lsm4	91	79.085	Seriola_lalandi_dorsalis
ENSCVAG00000021828	lsm4	56	98.630	ENSSPUG00000010166	LSM4	54	96.429	Sphenodon_punctatus
ENSCVAG00000021828	lsm4	98	88.235	ENSSPAG00000011615	lsm4	90	88.235	Stegastes_partitus
ENSCVAG00000021828	lsm4	56	97.260	ENSSSCG00000034314	LSM4	88	74.797	Sus_scrofa
ENSCVAG00000021828	lsm4	98	92.188	ENSTRUG00000021737	lsm4	90	92.188	Takifugu_rubripes
ENSCVAG00000021828	lsm4	98	86.822	ENSTNIG00000010191	lsm4	90	89.922	Tetraodon_nigroviridis
ENSCVAG00000021828	lsm4	56	97.260	ENSUAMG00000000665	LSM4	69	95.238	Ursus_americanus
ENSCVAG00000021828	lsm4	56	97.260	ENSUMAG00000009013	LSM4	88	74.797	Ursus_maritimus
ENSCVAG00000021828	lsm4	56	97.260	ENSVVUG00000008136	LSM4	63	74.797	Vulpes_vulpes
ENSCVAG00000021828	lsm4	63	97.590	ENSXETG00000024933	lsm4	88	87.097	Xenopus_tropicalis
ENSCVAG00000021828	lsm4	98	96.094	ENSXMAG00000026672	lsm4	68	96.094	Xiphophorus_maculatus