EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCVAG00000021872 (Gene tree)
Gene ID
107103981
Gene Symbol
pabpc1a
Alias
-
Full Name
polyadenylate-binding protein 1-like
Gene Type
protein_coding
Species
Cyprinodon_variegatus
Status
putative
Strand
Minus strand
Length
6628 bases
Position
chrKL654082.1:20933-27560
Accession
107103981
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCVAP00000032098PABPPF00658.186.2e-3211
ENSCVAP00000032098RRM_5PF13893.63.6e-0812
ENSCVAP00000032098RRM_5PF13893.63.6e-0822
ENSCVAP00000032098RRM_1PF00076.224.2e-9314
ENSCVAP00000032098RRM_1PF00076.224.2e-9324
ENSCVAP00000032098RRM_1PF00076.224.2e-9334
ENSCVAP00000032098RRM_1PF00076.224.2e-9344
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCVAT00000027571-3390XM_015403858ENSCVAP00000032098635 (aa)XP_015259344UPI000742C50C
Gene Model
Click here to download ENSCVAG00000021872's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000021872's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCVAG00000021872pabpc1a9869.904ENSCVAG00000015943-8688.462
ENSCVAG00000021872pabpc1a9876.651ENSCVAG00000019246pabpc49877.134
ENSCVAG00000021872pabpc1a5936.145ENSCVAG00000019080elavl48631.410
ENSCVAG00000021872pabpc1a5933.684ENSCVAG00000001635rbms2a5733.684
ENSCVAG00000021872pabpc1a6130.035ENSCVAG00000005689tial17330.035
ENSCVAG00000021872pabpc1a5638.667ENSCVAG00000000300rbm197438.667
ENSCVAG00000021872pabpc1a6630.403ENSCVAG00000013609tia1l9030.403
ENSCVAG00000021872pabpc1a5837.349ENSCVAG00000013913ELAVL28637.349
ENSCVAG00000021872pabpc1a10087.950ENSCVAG00000005489pabpc1b10088.106
ENSCVAG00000021872pabpc1a5937.349ENSCVAG00000014060elavl39037.349
ENSCVAG00000021872pabpc1a5034.507ENSCVAG00000006051-8634.507
ENSCVAG00000021872pabpc1a5933.684ENSCVAG00000013006rbms2b5633.684
ENSCVAG00000021872pabpc1a5730.464ENSCVAG00000016617-9130.464
ENSCVAG00000021872pabpc1a5736.047ENSCVAG00000004383-5836.047
ENSCVAG00000021872pabpc1a5338.554ENSCVAG00000018670si:dkey-205h23.26638.554
ENSCVAG00000021872pabpc1a5932.632ENSCVAG00000022814-5538.806
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCVAG00000021872pabpc1a5880.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSCVAG00000021872pabpc1a5880.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSCVAG00000021872pabpc1a10090.125ENSAPOG00000017776pabpc1b10090.125Acanthochromis_polyacanthus
ENSCVAG00000021872pabpc1a10097.953ENSAPOG00000015105pabpc1a10097.953Acanthochromis_polyacanthus
ENSCVAG00000021872pabpc1a5880.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSCVAG00000021872pabpc1a10085.938ENSACIG00000018366pabpc1b10086.094Amphilophus_citrinellus
ENSCVAG00000021872pabpc1a10097.953ENSACIG00000004685pabpc1a10097.953Amphilophus_citrinellus
ENSCVAG00000021872pabpc1a10089.969ENSAOCG00000019839pabpc1b10089.812Amphiprion_ocellaris
ENSCVAG00000021872pabpc1a10098.268ENSAOCG00000011656pabpc1a10098.268Amphiprion_ocellaris
ENSCVAG00000021872pabpc1a10098.268ENSAPEG00000006963pabpc1a10098.268Amphiprion_percula
ENSCVAG00000021872pabpc1a10089.969ENSAPEG00000010435pabpc1b10089.812Amphiprion_percula
ENSCVAG00000021872pabpc1a10097.795ENSATEG00000024852pabpc1a10097.795Anabas_testudineus
ENSCVAG00000021872pabpc1a10089.045ENSATEG00000012917pabpc1b10089.671Anabas_testudineus
ENSCVAG00000021872pabpc1a5880.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSCVAG00000021872pabpc1a5880.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSCVAG00000021872pabpc1a10088.871ENSACLG00000014335pabpc1b10089.185Astatotilapia_calliptera
ENSCVAG00000021872pabpc1a10097.638ENSACLG00000009399pabpc1a10097.638Astatotilapia_calliptera
ENSCVAG00000021872pabpc1a10090.282ENSAMXG00000008599pabpc1b10090.282Astyanax_mexicanus
ENSCVAG00000021872pabpc1a5979.024ENSBTAG00000050902-9879.024Bos_taurus
ENSCVAG00000021872pabpc1a5977.033ENSBTAG00000052491-9877.033Bos_taurus
ENSCVAG00000021872pabpc1a5880.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSCVAG00000021872pabpc1a5979.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSCVAG00000021872pabpc1a5880.102ENSCHIG00000006283-9880.102Capra_hircus
ENSCVAG00000021872pabpc1a5880.102ENSCHIG00000011138-9880.102Capra_hircus
ENSCVAG00000021872pabpc1a5880.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSCVAG00000021872pabpc1a5880.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSCVAG00000021872pabpc1a5880.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSCVAG00000021872pabpc1a5880.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSCVAG00000021872pabpc1a5880.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSCVAG00000021872pabpc1a5878.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSCVAG00000021872pabpc1a5878.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSCVAG00000021872pabpc1a5880.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSCVAG00000021872pabpc1a5780.110ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSCVAG00000021872pabpc1a10088.558ENSCSEG00000015241-10088.558Cynoglossus_semilaevis
ENSCVAG00000021872pabpc1a9997.310ENSCSEG00000013324pabpc1a10097.310Cynoglossus_semilaevis
ENSCVAG00000021872pabpc1a10091.223ENSDARG00000017219pabpc1a10091.223Danio_rerio
ENSCVAG00000021872pabpc1a10089.028ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSCVAG00000021872pabpc1a5880.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSCVAG00000021872pabpc1a5877.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSCVAG00000021872pabpc1a5978.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSCVAG00000021872pabpc1a5978.641ENSECAG00000002620-9878.641Equus_caballus
ENSCVAG00000021872pabpc1a5976.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSCVAG00000021872pabpc1a9994.025ENSELUG00000003614pabpc1a10094.025Esox_lucius
ENSCVAG00000021872pabpc1a5958.621ENSELUG00000005389-9758.621Esox_lucius
ENSCVAG00000021872pabpc1a10088.438ENSELUG00000015062-10088.281Esox_lucius
ENSCVAG00000021872pabpc1a5880.102ENSFCAG00000039701-9880.102Felis_catus
ENSCVAG00000021872pabpc1a5880.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSCVAG00000021872pabpc1a10088.871ENSFHEG00000008186pabpc1b10089.028Fundulus_heteroclitus
ENSCVAG00000021872pabpc1a10098.110ENSFHEG00000018979pabpc1a10098.110Fundulus_heteroclitus
ENSCVAG00000021872pabpc1a9993.354ENSGMOG00000013448pabpc1a9993.818Gadus_morhua
ENSCVAG00000021872pabpc1a10080.620ENSGMOG00000002448-10080.465Gadus_morhua
ENSCVAG00000021872pabpc1a10098.110ENSGAFG00000019750pabpc1a10098.110Gambusia_affinis
ENSCVAG00000021872pabpc1a10089.969ENSGAFG00000010193pabpc1b10089.969Gambusia_affinis
ENSCVAG00000021872pabpc1a10088.062ENSGACG00000003771pabpc1b10088.372Gasterosteus_aculeatus
ENSCVAG00000021872pabpc1a10097.795ENSGACG00000003572pabpc1a10097.795Gasterosteus_aculeatus
ENSCVAG00000021872pabpc1a5880.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSCVAG00000021872pabpc1a5880.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSCVAG00000021872pabpc1a10097.638ENSHBUG00000020487pabpc1a10097.638Haplochromis_burtoni
ENSCVAG00000021872pabpc1a10088.871ENSHBUG00000002075pabpc1b10089.185Haplochromis_burtoni
ENSCVAG00000021872pabpc1a5879.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSCVAG00000021872pabpc1a5879.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSCVAG00000021872pabpc1a5879.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSCVAG00000021872pabpc1a10097.480ENSHCOG00000013502pabpc1a10097.480Hippocampus_comes
ENSCVAG00000021872pabpc1a9868.038ENSHCOG00000003175pabpc1b9968.889Hippocampus_comes
ENSCVAG00000021872pabpc1a7555.717ENSIPUG00000021244-6355.769Ictalurus_punctatus
ENSCVAG00000021872pabpc1a10084.615ENSIPUG00000010791-10084.301Ictalurus_punctatus
ENSCVAG00000021872pabpc1a7458.209ENSIPUG00000018724-7558.209Ictalurus_punctatus
ENSCVAG00000021872pabpc1a10090.079ENSIPUG00000008848pabpc1a10089.921Ictalurus_punctatus
ENSCVAG00000021872pabpc1a5879.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSCVAG00000021872pabpc1a5879.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSCVAG00000021872pabpc1a5878.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSCVAG00000021872pabpc1a10098.268ENSKMAG00000000605pabpc1a10098.268Kryptolebias_marmoratus
ENSCVAG00000021872pabpc1a10088.365ENSKMAG00000008049pabpc1b10088.522Kryptolebias_marmoratus
ENSCVAG00000021872pabpc1a10088.871ENSLBEG00000026845pabpc1b10088.871Labrus_bergylta
ENSCVAG00000021872pabpc1a10097.008ENSLBEG00000024002-10097.008Labrus_bergylta
ENSCVAG00000021872pabpc1a5878.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSCVAG00000021872pabpc1a5879.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSCVAG00000021872pabpc1a5880.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSCVAG00000021872pabpc1a5880.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSCVAG00000021872pabpc1a5880.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSCVAG00000021872pabpc1a5880.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSCVAG00000021872pabpc1a5880.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSCVAG00000021872pabpc1a10089.185ENSMAMG00000014610pabpc1b10089.498Mastacembelus_armatus
ENSCVAG00000021872pabpc1a10098.110ENSMAMG00000004502-10098.110Mastacembelus_armatus
ENSCVAG00000021872pabpc1a10088.871ENSMZEG00005026745pabpc1b10089.185Maylandia_zebra
ENSCVAG00000021872pabpc1a10097.638ENSMZEG00005025416pabpc1a10097.638Maylandia_zebra
ENSCVAG00000021872pabpc1a5880.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSCVAG00000021872pabpc1a10095.781ENSMMOG00000018044pabpc1a10095.781Mola_mola
ENSCVAG00000021872pabpc1a10084.301ENSMMOG00000018009pabpc1b10084.301Mola_mola
ENSCVAG00000021872pabpc1a9872.973ENSMODG00000013156-9872.814Monodelphis_domestica
ENSCVAG00000021872pabpc1a9966.197ENSMODG00000015024-9966.041Monodelphis_domestica
ENSCVAG00000021872pabpc1a10097.323ENSMALG00000013020-10097.323Monopterus_albus
ENSCVAG00000021872pabpc1a10083.516ENSMALG00000006066pabpc1b10085.086Monopterus_albus
ENSCVAG00000021872pabpc1a5881.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSCVAG00000021872pabpc1a10097.480ENSNBRG00000003068-10097.480Neolamprologus_brichardi
ENSCVAG00000021872pabpc1a10088.871ENSNBRG00000013737pabpc1b10089.185Neolamprologus_brichardi
ENSCVAG00000021872pabpc1a5880.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSCVAG00000021872pabpc1a5879.592ENSODEG00000018540-9879.592Octodon_degus
ENSCVAG00000021872pabpc1a10097.165ENSONIG00000006871-10097.165Oreochromis_niloticus
ENSCVAG00000021872pabpc1a10089.185ENSONIG00000002717pabpc1b10089.498Oreochromis_niloticus
ENSCVAG00000021872pabpc1a5880.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSCVAG00000021872pabpc1a10084.615ENSORLG00000003008-10084.615Oryzias_latipes
ENSCVAG00000021872pabpc1a9998.571ENSORLG00000002691pabpc1a10096.535Oryzias_latipes
ENSCVAG00000021872pabpc1a10096.693ENSORLG00020022398pabpc1a10096.693Oryzias_latipes_hni
ENSCVAG00000021872pabpc1a10084.615ENSORLG00020022259-10084.615Oryzias_latipes_hni
ENSCVAG00000021872pabpc1a10096.535ENSORLG00015013633pabpc110096.535Oryzias_latipes_hsok
ENSCVAG00000021872pabpc1a10084.929ENSORLG00015010932-10084.929Oryzias_latipes_hsok
ENSCVAG00000021872pabpc1a10097.480ENSOMEG00000020219pabpc1a10097.480Oryzias_melastigma
ENSCVAG00000021872pabpc1a9482.151ENSOMEG00000013627pabpc1b10082.151Oryzias_melastigma
ENSCVAG00000021872pabpc1a5880.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSCVAG00000021872pabpc1a5880.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSCVAG00000021872pabpc1a5880.102ENSOARG00000005943-9880.102Ovis_aries
ENSCVAG00000021872pabpc1a5880.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSCVAG00000021872pabpc1a5880.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSCVAG00000021872pabpc1a5880.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSCVAG00000021872pabpc1a5880.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSCVAG00000021872pabpc1a5880.102ENSPANG00000011549-9880.102Papio_anubis
ENSCVAG00000021872pabpc1a10089.812ENSPKIG00000005676pabpc1b10089.812Paramormyrops_kingsleyae
ENSCVAG00000021872pabpc1a7091.928ENSPMGG00000023134-9791.928Periophthalmus_magnuspinnatus
ENSCVAG00000021872pabpc1a7098.202ENSPMGG00000022487pabpc1a9298.202Periophthalmus_magnuspinnatus
ENSCVAG00000021872pabpc1a9971.474ENSPCIG00000016995-5571.474Phascolarctos_cinereus
ENSCVAG00000021872pabpc1a10088.715ENSPFOG00000005917pabpc1b10089.812Poecilia_formosa
ENSCVAG00000021872pabpc1a10096.754ENSPFOG00000010815pabpc1a10096.754Poecilia_formosa
ENSCVAG00000021872pabpc1a10098.740ENSPLAG00000004114pabpc1a10098.740Poecilia_latipinna
ENSCVAG00000021872pabpc1a10089.028ENSPLAG00000001388pabpc1b10090.125Poecilia_latipinna
ENSCVAG00000021872pabpc1a10088.715ENSPMEG00000014399pabpc1b10089.812Poecilia_mexicana
ENSCVAG00000021872pabpc1a10098.740ENSPMEG00000001334pabpc1a10098.740Poecilia_mexicana
ENSCVAG00000021872pabpc1a10095.788ENSPREG00000019595pabpc1a10096.330Poecilia_reticulata
ENSCVAG00000021872pabpc1a10089.028ENSPREG00000010911pabpc1b10090.125Poecilia_reticulata
ENSCVAG00000021872pabpc1a5880.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSCVAG00000021872pabpc1a5980.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSCVAG00000021872pabpc1a5879.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSCVAG00000021872pabpc1a5980.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSCVAG00000021872pabpc1a10097.638ENSPNYG00000005192pabpc1a10097.638Pundamilia_nyererei
ENSCVAG00000021872pabpc1a10088.871ENSPNYG00000012578pabpc1b10089.185Pundamilia_nyererei
ENSCVAG00000021872pabpc1a10090.738ENSPNAG00000028408pabpc1a10090.738Pygocentrus_nattereri
ENSCVAG00000021872pabpc1a10089.655ENSPNAG00000024626pabpc1b10089.655Pygocentrus_nattereri
ENSCVAG00000021872pabpc1a5880.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSCVAG00000021872pabpc1a9989.437ENSRBIG00000028738-9589.437Rhinopithecus_bieti
ENSCVAG00000021872pabpc1a5880.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSCVAG00000021872pabpc1a9863.622ENSSHAG00000000511-10063.622Sarcophilus_harrisii
ENSCVAG00000021872pabpc1a6978.613ENSSFOG00015019668-8878.613Scleropages_formosus
ENSCVAG00000021872pabpc1a10089.482ENSSFOG00015006662pabpc1a10089.639Scleropages_formosus
ENSCVAG00000021872pabpc1a10089.953ENSSFOG00015002752-10090.110Scleropages_formosus
ENSCVAG00000021872pabpc1a10097.323ENSSMAG00000010803pabpc1a10097.323Scophthalmus_maximus
ENSCVAG00000021872pabpc1a10088.401ENSSMAG00000006869pabpc1b10088.558Scophthalmus_maximus
ENSCVAG00000021872pabpc1a10097.795ENSSDUG00000006675pabpc1a10097.795Seriola_dumerili
ENSCVAG00000021872pabpc1a10087.931ENSSDUG00000011965pabpc1b10088.245Seriola_dumerili
ENSCVAG00000021872pabpc1a10097.795ENSSLDG00000011661pabpc1a10097.795Seriola_lalandi_dorsalis
ENSCVAG00000021872pabpc1a10089.580ENSSLDG00000014156pabpc1b10089.891Seriola_lalandi_dorsalis
ENSCVAG00000021872pabpc1a10090.125ENSSPAG00000019265pabpc1b10090.439Stegastes_partitus
ENSCVAG00000021872pabpc1a10098.110ENSSPAG00000014453-10098.110Stegastes_partitus
ENSCVAG00000021872pabpc1a5880.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSCVAG00000021872pabpc1a5880.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSCVAG00000021872pabpc1a10085.915ENSTRUG00000003767-10086.385Takifugu_rubripes
ENSCVAG00000021872pabpc1a10094.654ENSTRUG00000011577-10095.440Takifugu_rubripes
ENSCVAG00000021872pabpc1a10086.449ENSTNIG00000009153pabpc1b10086.449Tetraodon_nigroviridis
ENSCVAG00000021872pabpc1a10091.938ENSTNIG00000013307pabpc1a10092.713Tetraodon_nigroviridis
ENSCVAG00000021872pabpc1a5880.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSCVAG00000021872pabpc1a5880.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSCVAG00000021872pabpc1a5880.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSCVAG00000021872pabpc1a9754.313ENSUMAG00000023926-8969.890Ursus_maritimus
ENSCVAG00000021872pabpc1a5879.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSCVAG00000021872pabpc1a9745.221ENSXETG00000015439-9745.057Xenopus_tropicalis
ENSCVAG00000021872pabpc1a10086.520ENSXCOG00000019901pabpc1b10086.364Xiphophorus_couchianus
ENSCVAG00000021872pabpc1a10092.441ENSXCOG00000017066pabpc1a10092.441Xiphophorus_couchianus
ENSCVAG00000021872pabpc1a10089.185ENSXMAG00000003753pabpc1b10090.125Xiphophorus_maculatus
ENSCVAG00000021872pabpc1a10098.583ENSXMAG00000002555pabpc1a10098.583Xiphophorus_maculatus

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