EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCVAG00000022333 (Gene tree)
Gene ID: 107091803
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 11554 bases
Position: chrKL652853.1:53113-64666
Accession: 107091803
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000019008	Smg4_UPF3	PF03467.15	2e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000032962	-	3064	XM_015385967	ENSCVAP00000019008	464 (aa)	XP_015241453	UPI000742C8B3

Gene Model

Click here to download ENSCVAG00000022333's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000022333's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000022333	upf3a	88	57.809	ENSG00000169062	UPF3A	90	57.809	Homo_sapiens
ENSCVAG00000022333	upf3a	100	88.362	ENSAPOG00000013484	upf3a	100	88.362	Acanthochromis_polyacanthus
ENSCVAG00000022333	upf3a	83	58.561	ENSAMEG00000004259	UPF3A	87	58.561	Ailuropoda_melanoleuca
ENSCVAG00000022333	upf3a	82	48.946	ENSACIG00000013582	upf3b	88	48.926	Amphilophus_citrinellus
ENSCVAG00000022333	upf3a	98	84.067	ENSACIG00000020468	upf3a	99	84.067	Amphilophus_citrinellus
ENSCVAG00000022333	upf3a	100	89.009	ENSAOCG00000020784	upf3a	100	89.009	Amphiprion_ocellaris
ENSCVAG00000022333	upf3a	65	58.917	ENSAOCG00000000706	upf3b	93	48.624	Amphiprion_ocellaris
ENSCVAG00000022333	upf3a	100	89.009	ENSAPEG00000003519	upf3a	100	89.009	Amphiprion_percula
ENSCVAG00000022333	upf3a	100	87.716	ENSATEG00000005843	upf3a	100	87.716	Anabas_testudineus
ENSCVAG00000022333	upf3a	82	65.316	ENSACAG00000001540	UPF3A	94	65.316	Anolis_carolinensis
ENSCVAG00000022333	upf3a	86	55.504	ENSANAG00000021713	UPF3A	88	55.504	Aotus_nancymaae
ENSCVAG00000022333	upf3a	82	46.929	ENSANAG00000025598	-	70	65.217	Aotus_nancymaae
ENSCVAG00000022333	upf3a	82	53.071	ENSANAG00000021894	-	77	69.091	Aotus_nancymaae
ENSCVAG00000022333	upf3a	100	85.062	ENSACLG00000026274	upf3a	100	85.062	Astatotilapia_calliptera
ENSCVAG00000022333	upf3a	98	80.000	ENSAMXG00000002608	upf3a	99	79.825	Astyanax_mexicanus
ENSCVAG00000022333	upf3a	50	30.364	WBGene00004882	smg-4	51	31.361	Caenorhabditis_elegans
ENSCVAG00000022333	upf3a	91	54.897	ENSCJAG00000019102	UPF3A	88	54.525	Callithrix_jacchus
ENSCVAG00000022333	upf3a	82	53.071	ENSCJAG00000004975	UPF3B	77	68.485	Callithrix_jacchus
ENSCVAG00000022333	upf3a	83	58.313	ENSCAFG00000006504	UPF3A	85	58.065	Canis_familiaris
ENSCVAG00000022333	upf3a	82	45.771	ENSCAFG00020004074	UPF3B	64	71.233	Canis_lupus_dingo
ENSCVAG00000022333	upf3a	81	58.838	ENSCAFG00020014268	UPF3A	81	58.586	Canis_lupus_dingo
ENSCVAG00000022333	upf3a	83	56.927	ENSCHIG00000008682	UPF3A	79	56.500	Capra_hircus
ENSCVAG00000022333	upf3a	82	46.244	ENSCHIG00000018011	-	53	69.512	Capra_hircus
ENSCVAG00000022333	upf3a	75	52.815	ENSTSYG00000001918	UPF3A	99	52.688	Carlito_syrichta
ENSCVAG00000022333	upf3a	82	51.699	ENSTSYG00000014690	UPF3B	76	64.118	Carlito_syrichta
ENSCVAG00000022333	upf3a	69	59.451	ENSCPOG00000006824	UPF3A	76	59.451	Cavia_porcellus
ENSCVAG00000022333	upf3a	81	38.817	ENSCCAG00000029813	-	56	56.805	Cebus_capucinus
ENSCVAG00000022333	upf3a	92	55.257	ENSCCAG00000018406	UPF3A	93	55.257	Cebus_capucinus
ENSCVAG00000022333	upf3a	92	56.621	ENSCATG00000029733	UPF3A	93	56.621	Cercocebus_atys
ENSCVAG00000022333	upf3a	92	55.782	ENSCSAG00000017388	UPF3A	93	55.782	Chlorocebus_sabaeus
ENSCVAG00000022333	upf3a	80	59.517	ENSCGRG00001017387	Upf3a	87	57.373	Cricetulus_griseus_chok1gshd
ENSCVAG00000022333	upf3a	80	59.517	ENSCGRG00000001468	Upf3a	87	57.373	Cricetulus_griseus_crigri
ENSCVAG00000022333	upf3a	99	84.449	ENSCSEG00000005106	upf3a	99	84.449	Cynoglossus_semilaevis
ENSCVAG00000022333	upf3a	99	78.834	ENSDARG00000069297	upf3a	99	79.167	Danio_rerio
ENSCVAG00000022333	upf3a	77	62.943	ENSDNOG00000034391	UPF3A	83	62.432	Dasypus_novemcinctus
ENSCVAG00000022333	upf3a	83	55.000	ENSETEG00000010110	UPF3A	83	54.591	Echinops_telfairi
ENSCVAG00000022333	upf3a	82	47.880	ENSEASG00005012919	UPF3B	62	68.116	Equus_asinus_asinus
ENSCVAG00000022333	upf3a	83	60.050	ENSEASG00005021884	UPF3A	82	60.050	Equus_asinus_asinus
ENSCVAG00000022333	upf3a	83	60.050	ENSECAG00000017141	UPF3A	82	60.050	Equus_caballus
ENSCVAG00000022333	upf3a	82	47.880	ENSECAG00000016947	UPF3B	62	61.429	Equus_caballus
ENSCVAG00000022333	upf3a	98	79.004	ENSELUG00000011050	upf3a	99	78.834	Esox_lucius
ENSCVAG00000022333	upf3a	85	57.995	ENSFCAG00000014602	UPF3A	92	55.730	Felis_catus
ENSCVAG00000022333	upf3a	50	55.602	ENSFHEG00000017895	upf3b	91	47.897	Fundulus_heteroclitus
ENSCVAG00000022333	upf3a	69	77.812	ENSGMOG00000019615	upf3a	100	76.807	Gadus_morhua
ENSCVAG00000022333	upf3a	100	90.517	ENSGAFG00000021170	upf3a	100	90.517	Gambusia_affinis
ENSCVAG00000022333	upf3a	69	81.620	ENSGACG00000001972	upf3a	100	81.620	Gasterosteus_aculeatus
ENSCVAG00000022333	upf3a	80	53.000	ENSGACG00000017435	upf3b	61	69.412	Gasterosteus_aculeatus
ENSCVAG00000022333	upf3a	82	48.346	ENSGGOG00000043074	-	82	47.074	Gorilla_gorilla
ENSCVAG00000022333	upf3a	85	47.666	ENSGGOG00000041219	-	87	47.315	Gorilla_gorilla
ENSCVAG00000022333	upf3a	88	57.720	ENSGGOG00000015428	UPF3A	90	57.576	Gorilla_gorilla
ENSCVAG00000022333	upf3a	100	88.147	ENSHBUG00000011325	upf3a	99	88.337	Haplochromis_burtoni
ENSCVAG00000022333	upf3a	80	54.068	ENSHGLG00000001544	UPF3A	90	54.331	Heterocephalus_glaber_female
ENSCVAG00000022333	upf3a	80	54.068	ENSHGLG00100013244	UPF3A	90	54.331	Heterocephalus_glaber_male
ENSCVAG00000022333	upf3a	94	80.227	ENSHCOG00000013985	upf3a	94	80.682	Hippocampus_comes
ENSCVAG00000022333	upf3a	98	78.901	ENSIPUG00000023450	upf3a	99	78.728	Ictalurus_punctatus
ENSCVAG00000022333	upf3a	100	88.172	ENSKMAG00000004381	upf3a	100	88.172	Kryptolebias_marmoratus
ENSCVAG00000022333	upf3a	98	82.018	ENSLBEG00000021570	upf3a	100	81.441	Labrus_bergylta
ENSCVAG00000022333	upf3a	60	43.402	ENSLACG00000006645	UPF3A	65	85.185	Latimeria_chalumnae
ENSCVAG00000022333	upf3a	98	72.473	ENSLOCG00000002665	upf3a	99	72.473	Lepisosteus_oculatus
ENSCVAG00000022333	upf3a	87	56.174	ENSMFAG00000045016	UPF3A	85	57.250	Macaca_fascicularis
ENSCVAG00000022333	upf3a	82	51.225	ENSMFAG00000045414	UPF3B	77	69.091	Macaca_fascicularis
ENSCVAG00000022333	upf3a	82	51.225	ENSMMUG00000020222	UPF3B	77	69.091	Macaca_mulatta
ENSCVAG00000022333	upf3a	79	60.647	ENSMMUG00000007449	UPF3A	88	58.647	Macaca_mulatta
ENSCVAG00000022333	upf3a	85	58.500	ENSMNEG00000036402	UPF3A	83	58.500	Macaca_nemestrina
ENSCVAG00000022333	upf3a	82	51.225	ENSMNEG00000039794	UPF3B	77	69.091	Macaca_nemestrina
ENSCVAG00000022333	upf3a	85	58.000	ENSMLEG00000014726	UPF3A	94	58.000	Mandrillus_leucophaeus
ENSCVAG00000022333	upf3a	100	84.167	ENSMAMG00000018364	upf3a	100	84.167	Mastacembelus_armatus
ENSCVAG00000022333	upf3a	100	85.062	ENSMZEG00005021571	upf3a	100	85.062	Maylandia_zebra
ENSCVAG00000022333	upf3a	84	63.793	ENSMGAG00000014837	UPF3A	99	63.570	Meleagris_gallopavo
ENSCVAG00000022333	upf3a	55	70.703	ENSMOCG00000000550	Upf3a	50	73.446	Microtus_ochrogaster
ENSCVAG00000022333	upf3a	100	82.744	ENSMMOG00000019751	upf3a	100	82.744	Mola_mola
ENSCVAG00000022333	upf3a	85	65.037	ENSMODG00000003159	UPF3A	95	65.686	Monodelphis_domestica
ENSCVAG00000022333	upf3a	80	59.467	ENSMUSG00000038398	Upf3a	87	59.467	Mus_musculus
ENSCVAG00000022333	upf3a	80	60.533	MGP_PahariEiJ_G0021311	Upf3a	87	60.533	Mus_pahari
ENSCVAG00000022333	upf3a	80	58.933	MGP_SPRETEiJ_G0031958	Upf3a	87	58.933	Mus_spretus
ENSCVAG00000022333	upf3a	83	58.897	ENSMPUG00000009139	UPF3A	82	58.647	Mustela_putorius_furo
ENSCVAG00000022333	upf3a	80	60.358	ENSMLUG00000015905	UPF3A	92	60.358	Myotis_lucifugus
ENSCVAG00000022333	upf3a	80	57.181	ENSNGAG00000019314	Upf3a	87	57.105	Nannospalax_galili
ENSCVAG00000022333	upf3a	100	88.362	ENSNBRG00000000828	upf3a	100	88.362	Neolamprologus_brichardi
ENSCVAG00000022333	upf3a	88	58.637	ENSNLEG00000007563	UPF3A	91	57.078	Nomascus_leucogenys
ENSCVAG00000022333	upf3a	100	88.412	ENSONIG00000006817	upf3a	100	88.412	Oreochromis_niloticus
ENSCVAG00000022333	upf3a	79	55.409	ENSOANG00000006985	-	98	55.673	Ornithorhynchus_anatinus
ENSCVAG00000022333	upf3a	100	81.197	ENSORLG00000010911	upf3a	100	81.197	Oryzias_latipes
ENSCVAG00000022333	upf3a	100	80.819	ENSORLG00020014317	upf3a	100	80.819	Oryzias_latipes_hni
ENSCVAG00000022333	upf3a	82	41.727	ENSORLG00020003758	upf3b	56	60.819	Oryzias_latipes_hni
ENSCVAG00000022333	upf3a	100	81.681	ENSORLG00015017339	upf3a	58	81.681	Oryzias_latipes_hsok
ENSCVAG00000022333	upf3a	100	82.328	ENSOMEG00000014425	upf3a	100	82.328	Oryzias_melastigma
ENSCVAG00000022333	upf3a	74	59.615	ENSOGAG00000004788	UPF3A	87	59.615	Otolemur_garnettii
ENSCVAG00000022333	upf3a	86	56.532	ENSOARG00000009004	UPF3A	88	56.532	Ovis_aries
ENSCVAG00000022333	upf3a	88	57.576	ENSPPAG00000042267	UPF3A	90	57.576	Pan_paniscus
ENSCVAG00000022333	upf3a	84	58.519	ENSPPRG00000025062	UPF3A	85	57.908	Panthera_pardus
ENSCVAG00000022333	upf3a	60	60.000	ENSPTIG00000015264	UPF3B	52	69.512	Panthera_tigris_altaica
ENSCVAG00000022333	upf3a	88	57.576	ENSPTRG00000006073	UPF3A	90	57.576	Pan_troglodytes
ENSCVAG00000022333	upf3a	82	47.258	ENSPTRG00000041835	-	87	44.386	Pan_troglodytes
ENSCVAG00000022333	upf3a	82	48.082	ENSPTRG00000041187	-	87	45.269	Pan_troglodytes
ENSCVAG00000022333	upf3a	82	45.013	ENSPTRG00000051640	-	87	43.734	Pan_troglodytes
ENSCVAG00000022333	upf3a	92	56.393	ENSPANG00000004346	UPF3A	93	56.393	Papio_anubis
ENSCVAG00000022333	upf3a	91	48.451	ENSPKIG00000019226	upf3b	93	63.816	Paramormyrops_kingsleyae
ENSCVAG00000022333	upf3a	88	73.253	ENSPKIG00000004422	upf3a	93	70.983	Paramormyrops_kingsleyae
ENSCVAG00000022333	upf3a	83	66.919	ENSPSIG00000007468	UPF3A	96	67.254	Pelodiscus_sinensis
ENSCVAG00000022333	upf3a	100	79.794	ENSPMGG00000012696	upf3a	100	79.794	Periophthalmus_magnuspinnatus
ENSCVAG00000022333	upf3a	81	59.221	ENSPEMG00000019968	-	87	59.946	Peromyscus_maniculatus_bairdii
ENSCVAG00000022333	upf3a	70	72.864	ENSPCIG00000019590	-	90	64.563	Phascolarctos_cinereus
ENSCVAG00000022333	upf3a	100	90.948	ENSPFOG00000013222	upf3a	100	90.948	Poecilia_formosa
ENSCVAG00000022333	upf3a	98	90.372	ENSPLAG00000011960	upf3a	100	90.372	Poecilia_latipinna
ENSCVAG00000022333	upf3a	100	87.578	ENSPMEG00000000836	upf3a	100	87.578	Poecilia_mexicana
ENSCVAG00000022333	upf3a	88	58.333	ENSPPYG00000005536	UPF3A	93	56.152	Pongo_abelii
ENSCVAG00000022333	upf3a	55	61.868	ENSPCAG00000013124	UPF3A	58	59.567	Procavia_capensis
ENSCVAG00000022333	upf3a	85	51.773	ENSPCOG00000021960	UPF3B	51	69.512	Propithecus_coquereli
ENSCVAG00000022333	upf3a	82	57.653	ENSPVAG00000005656	UPF3A	82	57.215	Pteropus_vampyrus
ENSCVAG00000022333	upf3a	100	85.062	ENSPNYG00000011289	upf3a	100	85.062	Pundamilia_nyererei
ENSCVAG00000022333	upf3a	85	51.049	ENSPNAG00000021528	upf3b	58	67.429	Pygocentrus_nattereri
ENSCVAG00000022333	upf3a	98	79.121	ENSPNAG00000019532	upf3a	99	78.947	Pygocentrus_nattereri
ENSCVAG00000022333	upf3a	71	63.333	ENSRNOG00000017397	Upf3a	81	63.333	Rattus_norvegicus
ENSCVAG00000022333	upf3a	88	57.421	ENSRBIG00000034007	UPF3A	93	57.005	Rhinopithecus_bieti
ENSCVAG00000022333	upf3a	85	58.145	ENSRROG00000012212	UPF3A	85	58.145	Rhinopithecus_roxellana
ENSCVAG00000022333	upf3a	82	52.812	ENSSBOG00000019740	UPF3B	78	69.939	Saimiri_boliviensis_boliviensis
ENSCVAG00000022333	upf3a	77	55.026	ENSSBOG00000029989	UPF3A	84	55.026	Saimiri_boliviensis_boliviensis
ENSCVAG00000022333	upf3a	84	65.432	ENSSHAG00000009895	UPF3A	96	66.256	Sarcophilus_harrisii
ENSCVAG00000022333	upf3a	98	69.518	ENSSFOG00015021851	upf3a	99	68.928	Scleropages_formosus
ENSCVAG00000022333	upf3a	52	66.932	ENSSMAG00000012913	upf3b	54	70.000	Scophthalmus_maximus
ENSCVAG00000022333	upf3a	100	79.472	ENSSMAG00000003858	upf3a	100	79.675	Scophthalmus_maximus
ENSCVAG00000022333	upf3a	100	85.417	ENSSDUG00000009680	upf3a	100	85.417	Seriola_dumerili
ENSCVAG00000022333	upf3a	100	88.362	ENSSLDG00000009700	upf3a	100	88.362	Seriola_lalandi_dorsalis
ENSCVAG00000022333	upf3a	79	49.740	ENSSARG00000007262	UPF3A	92	48.021	Sorex_araneus
ENSCVAG00000022333	upf3a	100	88.362	ENSSPAG00000007938	upf3a	100	88.362	Stegastes_partitus
ENSCVAG00000022333	upf3a	82	57.801	ENSSSCG00000024679	UPF3A	85	55.634	Sus_scrofa
ENSCVAG00000022333	upf3a	83	67.424	ENSTGUG00000009493	UPF3A	100	67.424	Taeniopygia_guttata
ENSCVAG00000022333	upf3a	100	80.603	ENSTRUG00000012730	upf3a	100	80.603	Takifugu_rubripes
ENSCVAG00000022333	upf3a	83	75.381	ENSTNIG00000014973	upf3a	100	75.127	Tetraodon_nigroviridis
ENSCVAG00000022333	upf3a	73	55.085	ENSTTRG00000015414	UPF3A	74	55.085	Tursiops_truncatus
ENSCVAG00000022333	upf3a	82	46.229	ENSUAMG00000024565	UPF3B	70	66.667	Ursus_americanus
ENSCVAG00000022333	upf3a	80	58.225	ENSVPAG00000003525	UPF3A	94	58.225	Vicugna_pacos
ENSCVAG00000022333	upf3a	81	57.576	ENSVVUG00000013538	UPF3A	80	57.072	Vulpes_vulpes
ENSCVAG00000022333	upf3a	82	45.771	ENSVVUG00000011594	UPF3B	77	69.091	Vulpes_vulpes
ENSCVAG00000022333	upf3a	84	58.376	ENSXETG00000002572	upf3a	93	58.376	Xenopus_tropicalis
ENSCVAG00000022333	upf3a	82	46.914	ENSXETG00000007440	upf3b	80	68.108	Xenopus_tropicalis
ENSCVAG00000022333	upf3a	100	91.810	ENSXMAG00000013452	upf3a	100	91.810	Xiphophorus_maculatus