EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000022398 (Gene tree)
Gene ID: 107082257
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valyl-tRNA synthetase 2%2C mitochondrial
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Plus strand
Length: 20497 bases
Position: chrKL652548.1:1592798-1613294
Accession: 107082257
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000019036	Val_tRNA-synt_C	PF10458.9	6.6e-06	1	1
ENSCVAP00000019036	tRNA-synt_1g	PF09334.11	1.4e-12	1	1
ENSCVAP00000019036	Anticodon_1	PF08264.13	9.7e-36	1	1
ENSCVAP00000019036	tRNA-synt_1	PF00133.22	1.7e-205	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000032973	-	4039	XM_015370840	ENSCVAP00000019036	1276 (aa)	XP_015226326	UPI000742B1D0

Gene Model

Click here to download ENSCVAG00000022398's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000022398's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000022398	vars	55	48.034	ENSCVAG00000017765	vars2	98	48.034

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000022398	vars	100	65.035	ENSG00000204394	VARS	99	72.393	Homo_sapiens
ENSCVAG00000022398	vars	94	90.199	ENSAPOG00000020691	vars	96	90.199	Acanthochromis_polyacanthus
ENSCVAG00000022398	vars	94	90.199	ENSAPOG00000020921	vars	96	90.199	Acanthochromis_polyacanthus
ENSCVAG00000022398	vars	100	65.295	ENSAMEG00000006417	VARS	100	65.352	Ailuropoda_melanoleuca
ENSCVAG00000022398	vars	100	90.376	ENSACIG00000013752	vars	100	90.376	Amphilophus_citrinellus
ENSCVAG00000022398	vars	100	90.987	ENSAOCG00000002447	vars	99	90.987	Amphiprion_ocellaris
ENSCVAG00000022398	vars	100	90.831	ENSAPEG00000010638	vars	99	90.831	Amphiprion_percula
ENSCVAG00000022398	vars	100	86.396	ENSATEG00000020219	vars	100	86.005	Anabas_testudineus
ENSCVAG00000022398	vars	90	72.049	ENSACAG00000029133	-	99	72.049	Anolis_carolinensis
ENSCVAG00000022398	vars	100	65.113	ENSANAG00000015453	VARS	100	65.113	Aotus_nancymaae
ENSCVAG00000022398	vars	100	91.928	ENSACLG00000025699	vars	97	91.928	Astatotilapia_calliptera
ENSCVAG00000022398	vars	96	80.163	ENSAMXG00000017716	vars	96	80.082	Astyanax_mexicanus
ENSCVAG00000022398	vars	100	65.579	ENSBTAG00000005631	VARS	100	65.579	Bos_taurus
ENSCVAG00000022398	vars	100	64.957	ENSCJAG00000002604	VARS	100	64.957	Callithrix_jacchus
ENSCVAG00000022398	vars	100	64.802	ENSCAFG00000000636	VARS	100	64.861	Canis_familiaris
ENSCVAG00000022398	vars	94	65.949	ENSCAFG00020020790	VARS	96	65.949	Canis_lupus_dingo
ENSCVAG00000022398	vars	100	65.657	ENSCHIG00000011008	VARS	100	65.657	Capra_hircus
ENSCVAG00000022398	vars	100	64.957	ENSTSYG00000001567	VARS	100	64.957	Carlito_syrichta
ENSCVAG00000022398	vars	91	68.322	ENSCAPG00000013736	VARS	98	67.897	Cavia_aperea
ENSCVAG00000022398	vars	100	64.842	ENSCPOG00000000870	VARS	100	64.451	Cavia_porcellus
ENSCVAG00000022398	vars	100	65.167	ENSCCAG00000035656	VARS	100	65.035	Cebus_capucinus
ENSCVAG00000022398	vars	100	65.194	ENSCATG00000022394	VARS	100	65.346	Cercocebus_atys
ENSCVAG00000022398	vars	93	64.634	ENSCLAG00000009470	VARS	97	64.222	Chinchilla_lanigera
ENSCVAG00000022398	vars	100	64.961	ENSCSAG00000008784	VARS	100	65.113	Chlorocebus_sabaeus
ENSCVAG00000022398	vars	77	75.051	ENSCPBG00000007943	VARS	96	75.000	Chrysemys_picta_bellii
ENSCVAG00000022398	vars	100	65.116	ENSCANG00000033570	VARS	100	65.268	Colobus_angolensis_palliatus
ENSCVAG00000022398	vars	100	65.190	ENSCGRG00001005686	Vars	100	65.268	Cricetulus_griseus_chok1gshd
ENSCVAG00000022398	vars	93	63.435	ENSCGRG00000013352	Vars	78	63.517	Cricetulus_griseus_crigri
ENSCVAG00000022398	vars	100	83.177	ENSCSEG00000019652	vars	100	82.942	Cynoglossus_semilaevis
ENSCVAG00000022398	vars	100	84.730	ENSDARG00000044575	vars	100	84.808	Danio_rerio
ENSCVAG00000022398	vars	86	69.037	ENSDORG00000016433	Vars	99	69.127	Dipodomys_ordii
ENSCVAG00000022398	vars	68	74.322	ENSETEG00000003824	VARS	77	74.322	Echinops_telfairi
ENSCVAG00000022398	vars	57	64.979	ENSEBUG00000004637	vars	100	64.979	Eptatretus_burgeri
ENSCVAG00000022398	vars	52	72.444	ENSEBUG00000007086	vars	83	72.444	Eptatretus_burgeri
ENSCVAG00000022398	vars	100	65.657	ENSEASG00005015673	VARS	100	65.657	Equus_asinus_asinus
ENSCVAG00000022398	vars	100	65.606	ENSECAG00000014620	VARS	100	65.839	Equus_caballus
ENSCVAG00000022398	vars	72	71.429	ENSEEUG00000004116	VARS	73	71.429	Erinaceus_europaeus
ENSCVAG00000022398	vars	100	84.555	ENSELUG00000006550	vars	97	84.399	Esox_lucius
ENSCVAG00000022398	vars	100	65.501	ENSFCAG00000004510	VARS	100	65.657	Felis_catus
ENSCVAG00000022398	vars	83	70.949	ENSFDAG00000011401	VARS	100	70.594	Fukomys_damarensis
ENSCVAG00000022398	vars	100	94.279	ENSFHEG00000010672	vars	100	94.279	Fundulus_heteroclitus
ENSCVAG00000022398	vars	100	81.386	ENSGMOG00000014908	vars	100	81.698	Gadus_morhua
ENSCVAG00000022398	vars	100	95.455	ENSGAFG00000021630	vars	100	95.455	Gambusia_affinis
ENSCVAG00000022398	vars	93	89.001	ENSGACG00000009601	vars	100	84.898	Gasterosteus_aculeatus
ENSCVAG00000022398	vars	50	58.255	ENSGAGG00000006508	-	91	60.125	Gopherus_agassizii
ENSCVAG00000022398	vars	100	65.039	ENSGGOG00000011364	VARS	100	65.346	Gorilla_gorilla
ENSCVAG00000022398	vars	100	92.006	ENSHBUG00000017151	vars	97	92.006	Haplochromis_burtoni
ENSCVAG00000022398	vars	100	65.008	ENSHGLG00000011646	VARS	100	65.008	Heterocephalus_glaber_female
ENSCVAG00000022398	vars	94	61.620	ENSHGLG00100018062	VARS	99	61.375	Heterocephalus_glaber_male
ENSCVAG00000022398	vars	99	84.603	ENSHCOG00000012198	vars	99	85.121	Hippocampus_comes
ENSCVAG00000022398	vars	100	83.255	ENSIPUG00000005218	vars	100	83.333	Ictalurus_punctatus
ENSCVAG00000022398	vars	100	65.812	ENSSTOG00000013112	VARS	100	65.734	Ictidomys_tridecemlineatus
ENSCVAG00000022398	vars	100	65.012	ENSJJAG00000019749	-	100	64.591	Jaculus_jaculus
ENSCVAG00000022398	vars	100	53.042	ENSJJAG00000015343	-	98	54.902	Jaculus_jaculus
ENSCVAG00000022398	vars	100	88.871	ENSKMAG00000009455	vars	100	88.558	Kryptolebias_marmoratus
ENSCVAG00000022398	vars	100	86.966	ENSLBEG00000010341	vars	99	87.043	Labrus_bergylta
ENSCVAG00000022398	vars	94	66.803	ENSLACG00000015232	VARS	99	66.912	Latimeria_chalumnae
ENSCVAG00000022398	vars	100	74.863	ENSLOCG00000004240	vars	100	74.628	Lepisosteus_oculatus
ENSCVAG00000022398	vars	100	65.086	ENSLAFG00000023090	VARS	100	65.008	Loxodonta_africana
ENSCVAG00000022398	vars	100	65.039	ENSMFAG00000001032	VARS	100	65.190	Macaca_fascicularis
ENSCVAG00000022398	vars	100	65.039	ENSMMUG00000006828	VARS	100	65.190	Macaca_mulatta
ENSCVAG00000022398	vars	100	65.039	ENSMNEG00000042072	VARS	100	65.190	Macaca_nemestrina
ENSCVAG00000022398	vars	100	65.116	ENSMLEG00000039307	VARS	100	65.268	Mandrillus_leucophaeus
ENSCVAG00000022398	vars	100	89.577	ENSMAMG00000003949	vars	100	89.577	Mastacembelus_armatus
ENSCVAG00000022398	vars	100	92.006	ENSMZEG00005018327	vars	97	92.006	Maylandia_zebra
ENSCVAG00000022398	vars	100	64.880	ENSMAUG00000006715	Vars	100	64.957	Mesocricetus_auratus
ENSCVAG00000022398	vars	100	65.271	ENSMICG00000003548	VARS	100	65.190	Microcebus_murinus
ENSCVAG00000022398	vars	100	64.075	ENSMOCG00000015404	Vars	100	64.075	Microtus_ochrogaster
ENSCVAG00000022398	vars	100	86.599	ENSMMOG00000015801	vars	100	86.520	Mola_mola
ENSCVAG00000022398	vars	100	65.659	ENSMODG00000015204	-	100	65.501	Monodelphis_domestica
ENSCVAG00000022398	vars	99	89.742	ENSMALG00000022532	vars	99	89.742	Monopterus_albus
ENSCVAG00000022398	vars	100	65.785	MGP_CAROLIEiJ_G0021491	Vars	100	65.785	Mus_caroli
ENSCVAG00000022398	vars	100	65.630	ENSMUSG00000007029	Vars	100	65.630	Mus_musculus
ENSCVAG00000022398	vars	100	65.552	MGP_PahariEiJ_G0020486	Vars	100	65.552	Mus_pahari
ENSCVAG00000022398	vars	100	65.708	MGP_SPRETEiJ_G0022396	Vars	100	65.708	Mus_spretus
ENSCVAG00000022398	vars	100	65.113	ENSMPUG00000010821	VARS	100	65.170	Mustela_putorius_furo
ENSCVAG00000022398	vars	78	67.925	ENSMLUG00000013126	VARS	100	68.060	Myotis_lucifugus
ENSCVAG00000022398	vars	100	65.163	ENSNGAG00000012151	Vars	100	65.163	Nannospalax_galili
ENSCVAG00000022398	vars	100	91.693	ENSNBRG00000020520	vars	100	91.693	Neolamprologus_brichardi
ENSCVAG00000022398	vars	100	65.035	ENSNLEG00000006351	VARS	100	65.035	Nomascus_leucogenys
ENSCVAG00000022398	vars	94	73.046	ENSMEUG00000011378	VARS	100	64.230	Notamacropus_eugenii
ENSCVAG00000022398	vars	100	65.346	ENSOPRG00000003607	VARS	100	65.423	Ochotona_princeps
ENSCVAG00000022398	vars	100	64.541	ENSODEG00000017681	VARS	100	64.463	Octodon_degus
ENSCVAG00000022398	vars	100	91.186	ENSONIG00000013064	vars	100	92.247	Oreochromis_niloticus
ENSCVAG00000022398	vars	77	67.878	ENSOANG00000005400	VARS	98	67.568	Ornithorhynchus_anatinus
ENSCVAG00000022398	vars	100	64.308	ENSOCUG00000022463	VARS	100	64.065	Oryctolagus_cuniculus
ENSCVAG00000022398	vars	100	89.261	ENSORLG00000013063	vars	100	89.339	Oryzias_latipes
ENSCVAG00000022398	vars	100	89.601	ENSORLG00020003504	vars	100	89.758	Oryzias_latipes_hni
ENSCVAG00000022398	vars	100	90.063	ENSORLG00015009001	vars	100	90.063	Oryzias_latipes_hsok
ENSCVAG00000022398	vars	100	90.219	ENSOMEG00000015016	vars	100	90.219	Oryzias_melastigma
ENSCVAG00000022398	vars	100	64.880	ENSOGAG00000007515	VARS	100	64.760	Otolemur_garnettii
ENSCVAG00000022398	vars	100	65.035	ENSPPAG00000034012	VARS	100	65.035	Pan_paniscus
ENSCVAG00000022398	vars	100	65.501	ENSPPRG00000014855	VARS	100	65.657	Panthera_pardus
ENSCVAG00000022398	vars	86	69.189	ENSPTIG00000010462	VARS	93	69.371	Panthera_tigris_altaica
ENSCVAG00000022398	vars	100	64.957	ENSPTRG00000017985	VARS	100	64.957	Pan_troglodytes
ENSCVAG00000022398	vars	100	63.580	ENSPANG00000014565	VARS	100	63.728	Papio_anubis
ENSCVAG00000022398	vars	100	81.167	ENSPKIG00000016304	vars	100	81.167	Paramormyrops_kingsleyae
ENSCVAG00000022398	vars	100	84.718	ENSPMGG00000023909	vars	100	84.483	Periophthalmus_magnuspinnatus
ENSCVAG00000022398	vars	100	64.802	ENSPEMG00000006639	Vars	100	64.880	Peromyscus_maniculatus_bairdii
ENSCVAG00000022398	vars	100	65.581	ENSPCIG00000018553	VARS	100	65.423	Phascolarctos_cinereus
ENSCVAG00000022398	vars	100	95.298	ENSPFOG00000015690	vars	100	95.298	Poecilia_formosa
ENSCVAG00000022398	vars	100	95.063	ENSPLAG00000009590	vars	100	95.063	Poecilia_latipinna
ENSCVAG00000022398	vars	100	95.219	ENSPMEG00000004708	vars	100	95.219	Poecilia_mexicana
ENSCVAG00000022398	vars	95	96.304	ENSPREG00000013264	vars	99	96.304	Poecilia_reticulata
ENSCVAG00000022398	vars	100	63.792	ENSPPYG00000016460	VARS	100	63.792	Pongo_abelii
ENSCVAG00000022398	vars	86	66.430	ENSPCAG00000013565	VARS	86	66.430	Procavia_capensis
ENSCVAG00000022398	vars	100	64.984	ENSPCOG00000010942	VARS	100	65.217	Propithecus_coquereli
ENSCVAG00000022398	vars	100	62.529	ENSPVAG00000012403	VARS	100	62.782	Pteropus_vampyrus
ENSCVAG00000022398	vars	100	92.085	ENSPNYG00000022511	vars	100	92.085	Pundamilia_nyererei
ENSCVAG00000022398	vars	100	83.919	ENSPNAG00000020962	vars	100	84.543	Pygocentrus_nattereri
ENSCVAG00000022398	vars	100	65.346	ENSRNOG00000000867	Vars	100	65.190	Rattus_norvegicus
ENSCVAG00000022398	vars	100	65.039	ENSRBIG00000041669	VARS	100	65.190	Rhinopithecus_bieti
ENSCVAG00000022398	vars	100	65.039	ENSRROG00000045490	VARS	100	65.190	Rhinopithecus_roxellana
ENSCVAG00000022398	vars	100	65.035	ENSSBOG00000035402	VARS	100	65.035	Saimiri_boliviensis_boliviensis
ENSCVAG00000022398	vars	100	64.665	ENSSHAG00000006937	VARS	100	64.692	Sarcophilus_harrisii
ENSCVAG00000022398	vars	100	80.715	ENSSFOG00015014272	vars	100	80.715	Scleropages_formosus
ENSCVAG00000022398	vars	100	88.498	ENSSMAG00000009596	vars	99	88.498	Scophthalmus_maximus
ENSCVAG00000022398	vars	100	91.315	ENSSDUG00000014177	vars	100	91.393	Seriola_dumerili
ENSCVAG00000022398	vars	100	90.923	ENSSLDG00000025316	vars	100	91.002	Seriola_lalandi_dorsalis
ENSCVAG00000022398	vars	100	90.674	ENSSPAG00000017068	vars	100	90.674	Stegastes_partitus
ENSCVAG00000022398	vars	100	64.907	ENSSSCG00000038950	VARS	100	65.140	Sus_scrofa
ENSCVAG00000022398	vars	82	81.202	ENSTRUG00000012307	vars	98	81.048	Takifugu_rubripes
ENSCVAG00000022398	vars	100	85.681	ENSTNIG00000008011	vars	100	85.681	Tetraodon_nigroviridis
ENSCVAG00000022398	vars	100	59.642	ENSTTRG00000014128	VARS	100	59.642	Tursiops_truncatus
ENSCVAG00000022398	vars	100	63.636	ENSUAMG00000010424	VARS	100	63.764	Ursus_americanus
ENSCVAG00000022398	vars	100	60.125	ENSUMAG00000013486	VARS	98	64.195	Ursus_maritimus
ENSCVAG00000022398	vars	100	65.167	ENSVVUG00000021323	VARS	100	64.984	Vulpes_vulpes
ENSCVAG00000022398	vars	100	64.469	ENSXETG00000024076	vars	100	64.192	Xenopus_tropicalis
ENSCVAG00000022398	vars	100	92.320	ENSXCOG00000019172	vars	100	92.320	Xiphophorus_couchianus
ENSCVAG00000022398	vars	100	95.219	ENSXMAG00000010927	vars	100	95.219	Xiphophorus_maculatus