EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCVAG00000022687 (Gene tree)
Gene ID: 107090686
Gene Symbol: larp1
Alias: wu:fb92d03|wu:fd15e07
Full Name: La ribonucleoprotein domain family member 1
Gene Type: protein_coding
Species: Cyprinodon_variegatus
Status: putative
Strand: Minus strand
Length: 55893 bases
Position: chrKL652808.1:650589-706481
Accession: 107090686
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCVAP00000019337	La	PF05383.17	9.7e-21	1	1
ENSCVAP00000019343	La	PF05383.17	1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCVAT00000033099	-	6450	-	ENSCVAP00000019343	1100 (aa)	-	-
ENSCVAT00000033097	-	6378	XM_015384230	ENSCVAP00000019337	1076 (aa)	XP_015239716	UPI0007428DE2

Gene Model

Click here to download ENSCVAG00000022687's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCVAG00000022687's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCVAG00000022687	larp1	91	51.396	ENSCVAG00000005046	larp1b	92	52.290

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCVAG00000022687	larp1	88	65.923	ENSG00000155506	LARP1	90	81.818	Homo_sapiens
ENSCVAG00000022687	larp1	87	94.595	ENSAPOG00000020685	larp1	99	94.595	Acanthochromis_polyacanthus
ENSCVAG00000022687	larp1	84	68.632	ENSAMEG00000016673	LARP1	99	67.695	Ailuropoda_melanoleuca
ENSCVAG00000022687	larp1	100	77.493	ENSACIG00000012994	larp1	99	77.747	Amphilophus_citrinellus
ENSCVAG00000022687	larp1	79	90.421	ENSAOCG00000007792	larp1	97	92.910	Amphiprion_ocellaris
ENSCVAG00000022687	larp1	100	88.693	ENSAPEG00000022246	larp1	98	88.761	Amphiprion_percula
ENSCVAG00000022687	larp1	100	85.076	ENSATEG00000013523	larp1	100	85.714	Anabas_testudineus
ENSCVAG00000022687	larp1	81	72.967	ENSAPLG00000007559	LARP1	99	71.007	Anas_platyrhynchos
ENSCVAG00000022687	larp1	87	70.697	ENSACAG00000004071	LARP1	97	72.900	Anolis_carolinensis
ENSCVAG00000022687	larp1	88	66.024	ENSANAG00000029949	LARP1	99	66.427	Aotus_nancymaae
ENSCVAG00000022687	larp1	100	86.326	ENSACLG00000015256	larp1	98	88.302	Astatotilapia_calliptera
ENSCVAG00000022687	larp1	96	77.948	ENSAMXG00000000859	larp1	98	76.571	Astyanax_mexicanus
ENSCVAG00000022687	larp1	96	62.973	ENSBTAG00000008443	LARP1	99	63.191	Bos_taurus
ENSCVAG00000022687	larp1	96	63.645	ENSCJAG00000004454	LARP1	99	63.196	Callithrix_jacchus
ENSCVAG00000022687	larp1	84	68.842	ENSCAFG00000017639	LARP1	99	67.901	Canis_familiaris
ENSCVAG00000022687	larp1	79	70.387	ENSCAFG00020023860	LARP1	98	69.333	Canis_lupus_dingo
ENSCVAG00000022687	larp1	96	64.501	ENSCHIG00000014414	LARP1	99	63.201	Capra_hircus
ENSCVAG00000022687	larp1	87	67.864	ENSTSYG00000013732	LARP1	98	68.072	Carlito_syrichta
ENSCVAG00000022687	larp1	76	67.920	ENSCAPG00000013865	LARP1	85	67.807	Cavia_aperea
ENSCVAG00000022687	larp1	85	68.120	ENSCPOG00000003377	LARP1	99	67.699	Cavia_porcellus
ENSCVAG00000022687	larp1	96	63.462	ENSCCAG00000025201	LARP1	99	63.106	Cebus_capucinus
ENSCVAG00000022687	larp1	96	62.625	ENSCATG00000030675	LARP1	99	63.412	Cercocebus_atys
ENSCVAG00000022687	larp1	87	67.901	ENSCLAG00000012755	LARP1	99	67.699	Chinchilla_lanigera
ENSCVAG00000022687	larp1	78	69.240	ENSCSAG00000010800	LARP1	98	67.853	Chlorocebus_sabaeus
ENSCVAG00000022687	larp1	84	65.857	ENSCHOG00000012716	LARP1	91	65.857	Choloepus_hoffmanni
ENSCVAG00000022687	larp1	87	73.250	ENSCPBG00000002173	LARP1	91	72.322	Chrysemys_picta_bellii
ENSCVAG00000022687	larp1	88	65.763	ENSCANG00000037418	LARP1	96	65.377	Colobus_angolensis_palliatus
ENSCVAG00000022687	larp1	98	64.189	ENSCGRG00001016913	Larp1	99	63.661	Cricetulus_griseus_chok1gshd
ENSCVAG00000022687	larp1	84	66.774	ENSCGRG00000009916	Larp1	99	66.917	Cricetulus_griseus_crigri
ENSCVAG00000022687	larp1	100	85.727	ENSCSEG00000016431	larp1	99	85.005	Cynoglossus_semilaevis
ENSCVAG00000022687	larp1	91	71.633	ENSDARG00000101722	larp1	96	73.231	Danio_rerio
ENSCVAG00000022687	larp1	98	62.644	ENSDNOG00000012073	LARP1	99	62.745	Dasypus_novemcinctus
ENSCVAG00000022687	larp1	87	65.705	ENSDORG00000002897	Larp1	98	66.632	Dipodomys_ordii
ENSCVAG00000022687	larp1	81	68.992	ENSETEG00000020251	LARP1	100	68.889	Echinops_telfairi
ENSCVAG00000022687	larp1	96	63.470	ENSEASG00005001070	LARP1	99	63.026	Equus_asinus_asinus
ENSCVAG00000022687	larp1	96	63.470	ENSECAG00000017002	LARP1	79	63.026	Equus_caballus
ENSCVAG00000022687	larp1	82	66.993	ENSEEUG00000001065	LARP1	99	66.034	Erinaceus_europaeus
ENSCVAG00000022687	larp1	99	77.778	ENSELUG00000019403	larp1	99	76.525	Esox_lucius
ENSCVAG00000022687	larp1	87	67.923	ENSFCAG00000000592	LARP1	99	62.644	Felis_catus
ENSCVAG00000022687	larp1	77	74.405	ENSFALG00000008335	LARP1	96	75.030	Ficedula_albicollis
ENSCVAG00000022687	larp1	84	69.182	ENSFDAG00000021125	LARP1	99	67.839	Fukomys_damarensis
ENSCVAG00000022687	larp1	63	81.232	ENSFHEG00000020307	larp1	97	81.525	Fundulus_heteroclitus
ENSCVAG00000022687	larp1	96	69.376	ENSGALG00000040109	LARP1	95	73.145	Gallus_gallus
ENSCVAG00000022687	larp1	96	69.397	ENSGAGG00000025113	LARP1	95	73.672	Gopherus_agassizii
ENSCVAG00000022687	larp1	85	67.186	ENSGGOG00000006048	LARP1	99	64.175	Gorilla_gorilla
ENSCVAG00000022687	larp1	100	86.905	ENSHBUG00000020762	larp1	98	88.866	Haplochromis_burtoni
ENSCVAG00000022687	larp1	98	62.963	ENSHGLG00000006267	LARP1	99	63.043	Heterocephalus_glaber_female
ENSCVAG00000022687	larp1	87	66.768	ENSHGLG00100014230	-	99	67.562	Heterocephalus_glaber_male
ENSCVAG00000022687	larp1	88	58.471	ENSHGLG00100003395	-	90	58.402	Heterocephalus_glaber_male
ENSCVAG00000022687	larp1	87	93.484	ENSHCOG00000010786	larp1	99	91.019	Hippocampus_comes
ENSCVAG00000022687	larp1	97	73.403	ENSIPUG00000019105	Larp1	96	77.113	Ictalurus_punctatus
ENSCVAG00000022687	larp1	84	68.410	ENSSTOG00000005678	LARP1	98	67.115	Ictidomys_tridecemlineatus
ENSCVAG00000022687	larp1	96	60.556	ENSJJAG00000016950	Larp1	99	60.109	Jaculus_jaculus
ENSCVAG00000022687	larp1	100	87.708	ENSKMAG00000018468	larp1	98	90.407	Kryptolebias_marmoratus
ENSCVAG00000022687	larp1	98	83.194	ENSLBEG00000027172	larp1	98	81.860	Labrus_bergylta
ENSCVAG00000022687	larp1	93	76.412	ENSLOCG00000012457	larp1	99	75.619	Lepisosteus_oculatus
ENSCVAG00000022687	larp1	98	63.148	ENSLAFG00000008991	LARP1	99	62.943	Loxodonta_africana
ENSCVAG00000022687	larp1	88	65.165	ENSMFAG00000031651	LARP1	96	64.980	Macaca_fascicularis
ENSCVAG00000022687	larp1	84	67.556	ENSMMUG00000009411	LARP1	99	66.322	Macaca_mulatta
ENSCVAG00000022687	larp1	79	69.300	ENSMNEG00000039294	LARP1	98	68.479	Macaca_nemestrina
ENSCVAG00000022687	larp1	88	65.365	ENSMLEG00000035142	LARP1	96	65.179	Mandrillus_leucophaeus
ENSCVAG00000022687	larp1	100	85.547	ENSMAMG00000021788	larp1	100	84.192	Mastacembelus_armatus
ENSCVAG00000022687	larp1	100	86.326	ENSMZEG00005009345	larp1	98	88.302	Maylandia_zebra
ENSCVAG00000022687	larp1	87	71.577	ENSMGAG00000005696	LARP1	98	72.421	Meleagris_gallopavo
ENSCVAG00000022687	larp1	98	63.735	ENSMAUG00000001385	Larp1	99	63.300	Mesocricetus_auratus
ENSCVAG00000022687	larp1	85	68.940	ENSMICG00000000837	LARP1	98	69.188	Microcebus_murinus
ENSCVAG00000022687	larp1	98	64.370	ENSMOCG00000008920	Larp1	99	63.841	Microtus_ochrogaster
ENSCVAG00000022687	larp1	94	64.008	ENSMMOG00000013364	larp1	99	64.415	Mola_mola
ENSCVAG00000022687	larp1	87	69.350	ENSMODG00000008663	LARP1	99	67.492	Monodelphis_domestica
ENSCVAG00000022687	larp1	100	86.285	ENSMALG00000017180	larp1	98	85.120	Monopterus_albus
ENSCVAG00000022687	larp1	98	64.007	MGP_CAROLIEiJ_G0016383	Larp1	99	63.481	Mus_caroli
ENSCVAG00000022687	larp1	98	64.098	ENSMUSG00000037331	Larp1	99	63.571	Mus_musculus
ENSCVAG00000022687	larp1	98	63.653	MGP_PahariEiJ_G0017518	Larp1	99	63.333	Mus_pahari
ENSCVAG00000022687	larp1	98	63.982	MGP_SPRETEiJ_G0017225	Larp1	99	63.751	Mus_spretus
ENSCVAG00000022687	larp1	81	60.064	ENSMPUG00000013564	LARP1	99	60.280	Mustela_putorius_furo
ENSCVAG00000022687	larp1	87	64.351	ENSMLUG00000002608	LARP1	99	64.549	Myotis_lucifugus
ENSCVAG00000022687	larp1	87	67.579	ENSNGAG00000001098	Larp1	98	66.907	Nannospalax_galili
ENSCVAG00000022687	larp1	90	85.421	ENSNBRG00000008963	larp1	98	85.318	Neolamprologus_brichardi
ENSCVAG00000022687	larp1	88	66.667	ENSNLEG00000016588	LARP1	98	66.946	Nomascus_leucogenys
ENSCVAG00000022687	larp1	87	63.109	ENSMEUG00000002957	LARP1	99	63.903	Notamacropus_eugenii
ENSCVAG00000022687	larp1	85	67.601	ENSOPRG00000013014	LARP1	99	67.632	Ochotona_princeps
ENSCVAG00000022687	larp1	86	67.742	ENSODEG00000010824	LARP1	99	67.492	Octodon_degus
ENSCVAG00000022687	larp1	99	83.816	ENSONIG00000017308	larp1	99	82.724	Oreochromis_niloticus
ENSCVAG00000022687	larp1	88	71.195	ENSOANG00000005096	LARP1	98	69.703	Ornithorhynchus_anatinus
ENSCVAG00000022687	larp1	98	63.743	ENSOCUG00000013066	LARP1	99	63.826	Oryctolagus_cuniculus
ENSCVAG00000022687	larp1	100	83.164	ENSORLG00000000824	larp1	97	84.428	Oryzias_latipes
ENSCVAG00000022687	larp1	100	83.041	ENSORLG00020022241	larp1	98	82.999	Oryzias_latipes_hni
ENSCVAG00000022687	larp1	100	83.641	ENSORLG00015007538	larp1	98	85.057	Oryzias_latipes_hsok
ENSCVAG00000022687	larp1	100	84.308	ENSOMEG00000003134	larp1	99	84.434	Oryzias_melastigma
ENSCVAG00000022687	larp1	87	67.695	ENSOGAG00000016750	LARP1	99	67.595	Otolemur_garnettii
ENSCVAG00000022687	larp1	84	69.264	ENSOARG00000009893	LARP1	99	67.975	Ovis_aries
ENSCVAG00000022687	larp1	85	67.895	ENSPPAG00000042993	LARP1	93	66.975	Pan_paniscus
ENSCVAG00000022687	larp1	88	67.139	ENSPPRG00000009780	LARP1	96	65.582	Panthera_pardus
ENSCVAG00000022687	larp1	88	67.308	ENSPTIG00000007013	LARP1	96	66.535	Panthera_tigris_altaica
ENSCVAG00000022687	larp1	96	62.741	ENSPTRG00000017447	LARP1	99	63.047	Pan_troglodytes
ENSCVAG00000022687	larp1	96	62.625	ENSPANG00000008080	LARP1	99	63.412	Papio_anubis
ENSCVAG00000022687	larp1	99	77.881	ENSPKIG00000010096	larp1	99	75.345	Paramormyrops_kingsleyae
ENSCVAG00000022687	larp1	99	66.327	ENSPKIG00000017153	-	99	67.685	Paramormyrops_kingsleyae
ENSCVAG00000022687	larp1	94	79.088	ENSPMGG00000011599	larp1	97	80.377	Periophthalmus_magnuspinnatus
ENSCVAG00000022687	larp1	87	67.542	ENSPEMG00000022523	Larp1	99	67.542	Peromyscus_maniculatus_bairdii
ENSCVAG00000022687	larp1	97	66.636	ENSPCIG00000019242	LARP1	91	65.201	Phascolarctos_cinereus
ENSCVAG00000022687	larp1	100	88.778	ENSPFOG00000005836	larp1	99	87.879	Poecilia_formosa
ENSCVAG00000022687	larp1	100	87.685	ENSPLAG00000008936	larp1	99	89.568	Poecilia_latipinna
ENSCVAG00000022687	larp1	100	88.507	ENSPMEG00000013656	larp1	99	87.603	Poecilia_mexicana
ENSCVAG00000022687	larp1	89	89.458	ENSPREG00000005726	larp1	98	88.669	Poecilia_reticulata
ENSCVAG00000022687	larp1	85	65.699	ENSPCAG00000006407	LARP1	97	66.525	Procavia_capensis
ENSCVAG00000022687	larp1	85	60.540	ENSPCOG00000016949	LARP1	99	63.158	Propithecus_coquereli
ENSCVAG00000022687	larp1	87	68.126	ENSPVAG00000002262	LARP1	99	63.181	Pteropus_vampyrus
ENSCVAG00000022687	larp1	100	86.418	ENSPNYG00000007938	larp1	98	88.406	Pundamilia_nyererei
ENSCVAG00000022687	larp1	97	76.727	ENSPNAG00000021427	larp1	99	76.420	Pygocentrus_nattereri
ENSCVAG00000022687	larp1	87	67.789	ENSRNOG00000031544	Larp1	98	67.045	Rattus_norvegicus
ENSCVAG00000022687	larp1	88	65.365	ENSRBIG00000038005	LARP1	96	65.179	Rhinopithecus_bieti
ENSCVAG00000022687	larp1	88	65.925	ENSRROG00000034073	LARP1	98	68.597	Rhinopithecus_roxellana
ENSCVAG00000022687	larp1	87	66.667	ENSSBOG00000019816	LARP1	99	66.632	Saimiri_boliviensis_boliviensis
ENSCVAG00000022687	larp1	87	70.582	ENSSHAG00000011115	LARP1	99	68.711	Sarcophilus_harrisii
ENSCVAG00000022687	larp1	97	73.649	ENSSFOG00015018058	-	98	71.657	Scleropages_formosus
ENSCVAG00000022687	larp1	88	77.245	ENSSFOG00015020304	larp1	95	77.273	Scleropages_formosus
ENSCVAG00000022687	larp1	93	84.289	ENSSMAG00000007468	larp1	98	84.486	Scophthalmus_maximus
ENSCVAG00000022687	larp1	100	86.953	ENSSDUG00000000268	larp1	98	85.962	Seriola_dumerili
ENSCVAG00000022687	larp1	83	84.099	ENSSLDG00000016505	larp1	98	83.867	Seriola_lalandi_dorsalis
ENSCVAG00000022687	larp1	54	84.739	ENSSARG00000013907	-	87	79.643	Sorex_araneus
ENSCVAG00000022687	larp1	98	64.911	ENSSPUG00000012179	-	99	65.742	Sphenodon_punctatus
ENSCVAG00000022687	larp1	100	87.158	ENSSPAG00000003910	larp1	98	86.098	Stegastes_partitus
ENSCVAG00000022687	larp1	87	67.890	ENSSSCG00000017069	LARP1	99	68.282	Sus_scrofa
ENSCVAG00000022687	larp1	83	72.805	ENSTGUG00000000704	LARP1	100	71.092	Taeniopygia_guttata
ENSCVAG00000022687	larp1	99	82.768	ENSTRUG00000009470	larp1	99	82.106	Takifugu_rubripes
ENSCVAG00000022687	larp1	81	67.034	ENSTBEG00000003381	LARP1	99	66.925	Tupaia_belangeri
ENSCVAG00000022687	larp1	85	67.466	ENSTTRG00000015934	LARP1	99	67.699	Tursiops_truncatus
ENSCVAG00000022687	larp1	88	67.034	ENSUAMG00000019334	LARP1	99	62.900	Ursus_americanus
ENSCVAG00000022687	larp1	84	68.593	ENSUMAG00000002934	LARP1	96	70.090	Ursus_maritimus
ENSCVAG00000022687	larp1	79	70.387	ENSVVUG00000004644	LARP1	98	69.333	Vulpes_vulpes
ENSCVAG00000022687	larp1	90	69.939	ENSXETG00000008413	larp1	99	66.511	Xenopus_tropicalis
ENSCVAG00000022687	larp1	88	84.319	ENSXCOG00000004022	larp1	98	86.461	Xiphophorus_couchianus
ENSCVAG00000022687	larp1	100	88.406	ENSXMAG00000018780	larp1	99	87.592	Xiphophorus_maculatus