EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDARG00000000394 (Gene tree)
Gene ID: 556290
Gene Symbol: matr3l1.1
Alias: matr3l|si:bz1d10.2|wu:fb78d04|wu:fc09f04|wu:fe36a04
Full Name: matrin 3-like 1.1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 20207
Position: chr14: 25079782-25099988
Accession: ZDB-GENE-030616-40
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000184244	-	3468	-	ENSDARP00000151559	1155 (aa)	-	Q800H6
ENSDART00000144168	-	3991	XM_005173122	ENSDARP00000117572	1155 (aa)	XP_005173179	Q800H6
ENSDART00000136630	-	1261	-	ENSDARP00000122692	420 (aa)	-	F1QTW8

Gene Model

Click here to download ENSDARG00000000394's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000000394's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000000394	matr3l1.1	85	30.664	ENSDARG00000101808	si:ch211-271b14.1	86	41.667	Danio_rerio