EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000001244 (Gene tree)
Gene ID: 406751
Gene Symbol: srrm1
Alias: wu:fb34f04|wu:fb38b06|zgc:63802
Full Name: serine/arginine repetitive matrix 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 14254 bases
Position: chr17:25426091-25440344
Accession: ZDB-GENE-040426-2789
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000124762	PWI	PF01480.17	2.2e-30	1	1
ENSDARP00000111346	PWI	PF01480.17	2.2e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000149790	-	612	-	-	- (aa)	-	-
ENSDART00000149747	-	567	-	-	- (aa)	-	-
ENSDART00000148856	-	889	-	ENSDARP00000124575	79 (aa)	-	F8W2X4
ENSDART00000148483	-	834	-	-	- (aa)	-	-
ENSDART00000121848	-	3480	XM_005158502	ENSDARP00000111346	929 (aa)	XP_005158559	E7F1X7
ENSDART00000149557	-	803	-	ENSDARP00000124824	238 (aa)	-	F8W280
ENSDART00000150195	-	848	-	ENSDARP00000123976	283 (aa)	-	F8W467
ENSDART00000149241	-	3517	-	ENSDARP00000124762	896 (aa)	-	F8W2E1

Gene Model

Click here to download ENSDARG00000001244's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000001244's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000001244	srrm1	100	96.203	ENSAPOG00000001170	srrm1	100	96.203	Acanthochromis_polyacanthus
ENSDARG00000001244	srrm1	99	96.154	ENSAOCG00000021757	srrm1	58	50.741	Amphiprion_ocellaris
ENSDARG00000001244	srrm1	99	94.872	ENSAPEG00000018964	srrm1	58	50.906	Amphiprion_percula
ENSDARG00000001244	srrm1	99	97.436	ENSATEG00000007659	srrm1	58	49.010	Anabas_testudineus
ENSDARG00000001244	srrm1	84	66.667	ENSCANG00000026444	-	77	50.000	Colobus_angolensis_palliatus
ENSDARG00000001244	srrm1	100	98.734	ENSELUG00000003385	srrm1	100	98.734	Esox_lucius
ENSDARG00000001244	srrm1	99	96.154	ENSGACG00000007266	srrm1	70	88.889	Gasterosteus_aculeatus
ENSDARG00000001244	srrm1	64	62.637	ENSHBUG00000020364	srrm1	76	62.559	Haplochromis_burtoni
ENSDARG00000001244	srrm1	99	98.718	ENSIPUG00000016845	srrm1	56	45.484	Ictalurus_punctatus
ENSDARG00000001244	srrm1	99	96.154	ENSLBEG00000013936	srrm1	75	73.077	Labrus_bergylta
ENSDARG00000001244	srrm1	99	97.436	ENSMAMG00000010305	srrm1	58	50.660	Mastacembelus_armatus
ENSDARG00000001244	srrm1	99	96.154	ENSONIG00000008206	srrm1	54	47.273	Oreochromis_niloticus
ENSDARG00000001244	srrm1	99	96.154	ENSORLG00015014743	srrm1	56	47.716	Oryzias_latipes_hsok
ENSDARG00000001244	srrm1	99	96.154	ENSOMEG00000014110	srrm1	74	96.154	Oryzias_melastigma
ENSDARG00000001244	srrm1	100	96.203	ENSPLAG00000006807	srrm1	100	96.203	Poecilia_latipinna
ENSDARG00000001244	srrm1	99	96.154	ENSPLAG00000002058	srrm1	77	96.154	Poecilia_latipinna
ENSDARG00000001244	srrm1	99	96.154	ENSPREG00000002652	srrm1	86	86.486	Poecilia_reticulata
ENSDARG00000001244	srrm1	63	84.564	ENSPNAG00000024898	srrm1	89	78.756	Pygocentrus_nattereri
ENSDARG00000001244	srrm1	90	97.183	ENSSFOG00015024011	srrm1	88	73.571	Scleropages_formosus
ENSDARG00000001244	srrm1	99	97.436	ENSSDUG00000012967	srrm1	58	48.600	Seriola_dumerili
ENSDARG00000001244	srrm1	99	97.436	ENSSLDG00000012771	srrm1	58	49.175	Seriola_lalandi_dorsalis
ENSDARG00000001244	srrm1	99	96.154	ENSSPAG00000009507	srrm1	58	48.350	Stegastes_partitus
ENSDARG00000001244	srrm1	99	92.308	ENSTRUG00000002519	srrm1	58	48.662	Takifugu_rubripes
ENSDARG00000001244	srrm1	99	96.154	ENSXCOG00000011828	srrm1	99	78.059	Xiphophorus_couchianus
ENSDARG00000001244	srrm1	99	96.154	ENSXMAG00000018863	srrm1	58	47.712	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0006397	mRNA processing	-	IEA	Process