EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000002215 (Gene tree)
Gene ID: 321129
Gene Symbol: rtca
Alias: cb158|rtcd1|sb:cb158|wu:fc62c03
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 8898 bases
Position: chr22:16282144-16291041
Accession: ZDB-GENE-030131-9687
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000023892	RTC	PF01137.21	2.9e-88	1	1
ENSDARP00000023892	RTC_insert	PF05189.13	5.9e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000021666	-	2167	-	ENSDARP00000023892	363 (aa)	-	Q7ZUX5
ENSDART00000149071	-	787	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000002215's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000002215's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000002215	rtca	100	74.317	ENSG00000137996	RTCA	100	74.317	Homo_sapiens
ENSDARG00000002215	rtca	100	79.670	ENSAPOG00000001345	rtca	99	79.670	Acanthochromis_polyacanthus
ENSDARG00000002215	rtca	73	74.349	ENSAMEG00000008855	RTCA	100	74.349	Ailuropoda_melanoleuca
ENSDARG00000002215	rtca	100	80.220	ENSACIG00000019643	rtca	100	80.220	Amphilophus_citrinellus
ENSDARG00000002215	rtca	100	79.121	ENSAOCG00000014979	rtca	99	79.121	Amphiprion_ocellaris
ENSDARG00000002215	rtca	100	78.846	ENSAPEG00000006945	rtca	99	78.846	Amphiprion_percula
ENSDARG00000002215	rtca	96	80.516	ENSATEG00000006315	rtca	96	80.516	Anabas_testudineus
ENSDARG00000002215	rtca	96	69.688	ENSAPLG00000015430	RTCA	100	69.688	Anas_platyrhynchos
ENSDARG00000002215	rtca	100	73.224	ENSANAG00000025446	RTCA	100	73.224	Aotus_nancymaae
ENSDARG00000002215	rtca	100	79.670	ENSACLG00000020770	rtca	99	79.670	Astatotilapia_calliptera
ENSDARG00000002215	rtca	100	91.758	ENSAMXG00000043271	rtca	100	91.758	Astyanax_mexicanus
ENSDARG00000002215	rtca	100	74.044	ENSBTAG00000006321	RTCA	100	74.044	Bos_taurus
ENSDARG00000002215	rtca	100	73.497	ENSCJAG00000003398	RTCA	100	73.497	Callithrix_jacchus
ENSDARG00000002215	rtca	100	73.770	ENSCAFG00000020010	RTCA	68	73.770	Canis_familiaris
ENSDARG00000002215	rtca	100	73.770	ENSCAFG00020011528	RTCA	57	73.770	Canis_lupus_dingo
ENSDARG00000002215	rtca	100	73.770	ENSCHIG00000018937	RTCA	100	73.770	Capra_hircus
ENSDARG00000002215	rtca	100	72.404	ENSTSYG00000011305	RTCA	100	72.404	Carlito_syrichta
ENSDARG00000002215	rtca	100	73.497	ENSCCAG00000021844	RTCA	99	74.924	Cebus_capucinus
ENSDARG00000002215	rtca	100	70.976	ENSCATG00000019364	RTCA	100	73.463	Cercocebus_atys
ENSDARG00000002215	rtca	87	75.000	ENSCLAG00000006125	RTCA	100	75.000	Chinchilla_lanigera
ENSDARG00000002215	rtca	100	73.770	ENSCSAG00000001509	RTCA	100	73.770	Chlorocebus_sabaeus
ENSDARG00000002215	rtca	100	72.404	ENSCHOG00000005211	RTCA	100	72.404	Choloepus_hoffmanni
ENSDARG00000002215	rtca	100	70.137	ENSCPBG00000026658	RTCA	100	70.137	Chrysemys_picta_bellii
ENSDARG00000002215	rtca	99	55.096	ENSCING00000007875	-	99	55.096	Ciona_intestinalis
ENSDARG00000002215	rtca	99	53.444	ENSCSAVG00000007269	-	99	53.444	Ciona_savignyi
ENSDARG00000002215	rtca	100	73.497	ENSCANG00000040106	RTCA	100	73.497	Colobus_angolensis_palliatus
ENSDARG00000002215	rtca	73	72.862	ENSCGRG00001013163	Rtca	85	72.862	Cricetulus_griseus_chok1gshd
ENSDARG00000002215	rtca	99	75.414	ENSCSEG00000000530	rtca	98	75.414	Cynoglossus_semilaevis
ENSDARG00000002215	rtca	100	65.659	ENSCVAG00000021809	rtca	100	65.659	Cyprinodon_variegatus
ENSDARG00000002215	rtca	100	73.224	ENSDNOG00000000456	RTCA	100	73.224	Dasypus_novemcinctus
ENSDARG00000002215	rtca	100	72.404	ENSDORG00000005448	Rtca	100	72.404	Dipodomys_ordii
ENSDARG00000002215	rtca	99	40.833	FBgn0025630	Rtca	99	40.833	Drosophila_melanogaster
ENSDARG00000002215	rtca	95	54.755	ENSEBUG00000008556	rtca	96	54.755	Eptatretus_burgeri
ENSDARG00000002215	rtca	100	72.951	ENSEASG00005015926	RTCA	100	72.951	Equus_asinus_asinus
ENSDARG00000002215	rtca	100	72.951	ENSECAG00000019831	RTCA	100	72.951	Equus_caballus
ENSDARG00000002215	rtca	91	66.474	ENSEEUG00000001165	RTCA	100	66.474	Erinaceus_europaeus
ENSDARG00000002215	rtca	99	82.873	ENSELUG00000003741	rtca	99	82.873	Esox_lucius
ENSDARG00000002215	rtca	100	73.770	ENSFCAG00000024460	RTCA	100	73.770	Felis_catus
ENSDARG00000002215	rtca	91	72.072	ENSFALG00000002443	RTCA	90	72.072	Ficedula_albicollis
ENSDARG00000002215	rtca	98	58.287	ENSFDAG00000016084	-	100	58.287	Fukomys_damarensis
ENSDARG00000002215	rtca	100	72.951	ENSFDAG00000012070	-	100	72.951	Fukomys_damarensis
ENSDARG00000002215	rtca	56	82.673	ENSFHEG00000002868	rtca	93	78.802	Fundulus_heteroclitus
ENSDARG00000002215	rtca	100	79.670	ENSGMOG00000013264	rtca	100	79.670	Gadus_morhua
ENSDARG00000002215	rtca	100	69.041	ENSGALG00000005277	RTCA	100	69.041	Gallus_gallus
ENSDARG00000002215	rtca	100	78.297	ENSGAFG00000011853	rtca	99	78.297	Gambusia_affinis
ENSDARG00000002215	rtca	100	77.198	ENSGACG00000013497	rtca	100	77.198	Gasterosteus_aculeatus
ENSDARG00000002215	rtca	80	69.283	ENSGAGG00000023306	RTCA	100	69.283	Gopherus_agassizii
ENSDARG00000002215	rtca	100	73.224	ENSGGOG00000044018	-	100	73.224	Gorilla_gorilla
ENSDARG00000002215	rtca	100	73.770	ENSGGOG00000009546	-	100	73.786	Gorilla_gorilla
ENSDARG00000002215	rtca	100	79.670	ENSHBUG00000002114	rtca	99	79.670	Haplochromis_burtoni
ENSDARG00000002215	rtca	100	72.678	ENSHGLG00000002617	RTCA	100	72.678	Heterocephalus_glaber_female
ENSDARG00000002215	rtca	100	72.678	ENSHGLG00100006056	RTCA	100	72.678	Heterocephalus_glaber_male
ENSDARG00000002215	rtca	100	68.320	ENSHCOG00000020628	rtca	89	68.320	Hippocampus_comes
ENSDARG00000002215	rtca	100	90.934	ENSIPUG00000024803	rtca	100	90.934	Ictalurus_punctatus
ENSDARG00000002215	rtca	100	68.579	ENSSTOG00000013528	-	100	68.579	Ictidomys_tridecemlineatus
ENSDARG00000002215	rtca	100	64.208	ENSSTOG00000033099	-	100	64.208	Ictidomys_tridecemlineatus
ENSDARG00000002215	rtca	100	53.151	ENSJJAG00000016178	Rtca	100	53.151	Jaculus_jaculus
ENSDARG00000002215	rtca	100	78.846	ENSKMAG00000006651	rtca	99	78.846	Kryptolebias_marmoratus
ENSDARG00000002215	rtca	99	78.947	ENSLBEG00000028971	rtca	99	78.947	Labrus_bergylta
ENSDARG00000002215	rtca	88	78.370	ENSLBEG00000002448	-	99	78.370	Labrus_bergylta
ENSDARG00000002215	rtca	100	69.863	ENSLACG00000013666	RTCA	100	69.863	Latimeria_chalumnae
ENSDARG00000002215	rtca	100	80.274	ENSLOCG00000000093	rtca	99	80.274	Lepisosteus_oculatus
ENSDARG00000002215	rtca	100	72.404	ENSLAFG00000001473	RTCA	100	72.404	Loxodonta_africana
ENSDARG00000002215	rtca	100	73.770	ENSMFAG00000034132	RTCA	100	73.770	Macaca_fascicularis
ENSDARG00000002215	rtca	100	73.770	ENSMMUG00000019105	RTCA	100	73.770	Macaca_mulatta
ENSDARG00000002215	rtca	84	73.786	ENSMNEG00000037163	RTCA	100	73.786	Macaca_nemestrina
ENSDARG00000002215	rtca	100	60.383	ENSMLEG00000042151	RTCA	100	60.383	Mandrillus_leucophaeus
ENSDARG00000002215	rtca	100	81.593	ENSMAMG00000016536	rtca	100	81.593	Mastacembelus_armatus
ENSDARG00000002215	rtca	100	79.670	ENSMZEG00005017945	rtca	99	79.670	Maylandia_zebra
ENSDARG00000002215	rtca	87	70.440	ENSMGAG00000006892	RTCA	99	70.440	Meleagris_gallopavo
ENSDARG00000002215	rtca	100	72.131	ENSMAUG00000008488	Rtca	100	72.131	Mesocricetus_auratus
ENSDARG00000002215	rtca	84	74.434	ENSMICG00000008643	RTCA	100	74.434	Microcebus_murinus
ENSDARG00000002215	rtca	100	72.131	ENSMOCG00000016660	Rtca	100	72.131	Microtus_ochrogaster
ENSDARG00000002215	rtca	84	79.805	ENSMMOG00000007750	rtca	100	79.805	Mola_mola
ENSDARG00000002215	rtca	100	72.404	ENSMODG00000003557	RTCA	100	72.404	Monodelphis_domestica
ENSDARG00000002215	rtca	100	81.044	ENSMALG00000020844	rtca	100	81.044	Monopterus_albus
ENSDARG00000002215	rtca	100	71.038	MGP_CAROLIEiJ_G0025565	Rtca	100	71.038	Mus_caroli
ENSDARG00000002215	rtca	100	70.492	ENSMUSG00000000339	Rtca	100	70.492	Mus_musculus
ENSDARG00000002215	rtca	100	71.038	MGP_PahariEiJ_G0027011	Rtca	100	71.038	Mus_pahari
ENSDARG00000002215	rtca	100	70.765	MGP_SPRETEiJ_G0026515	Rtca	100	70.765	Mus_spretus
ENSDARG00000002215	rtca	100	73.770	ENSMPUG00000012119	RTCA	100	73.770	Mustela_putorius_furo
ENSDARG00000002215	rtca	100	69.210	ENSMLUG00000009922	RTCA	100	69.210	Myotis_lucifugus
ENSDARG00000002215	rtca	100	71.585	ENSNGAG00000011540	Rtca	99	71.585	Nannospalax_galili
ENSDARG00000002215	rtca	100	79.945	ENSNBRG00000003062	rtca	99	79.945	Neolamprologus_brichardi
ENSDARG00000002215	rtca	100	74.044	ENSNLEG00000031426	RTCA	100	74.044	Nomascus_leucogenys
ENSDARG00000002215	rtca	73	68.773	ENSOPRG00000012092	RTCA	71	68.773	Ochotona_princeps
ENSDARG00000002215	rtca	95	72.989	ENSODEG00000006990	RTCA	96	73.219	Octodon_degus
ENSDARG00000002215	rtca	100	80.220	ENSONIG00000007753	rtca	99	80.220	Oreochromis_niloticus
ENSDARG00000002215	rtca	87	73.502	ENSOANG00000012055	RTCA	98	73.502	Ornithorhynchus_anatinus
ENSDARG00000002215	rtca	100	73.224	ENSOCUG00000014247	RTCA	100	73.224	Oryctolagus_cuniculus
ENSDARG00000002215	rtca	100	79.670	ENSORLG00000013605	rtca	100	79.670	Oryzias_latipes
ENSDARG00000002215	rtca	100	79.945	ENSORLG00020001904	rtca	100	79.945	Oryzias_latipes_hni
ENSDARG00000002215	rtca	100	79.945	ENSORLG00015021064	rtca	100	79.945	Oryzias_latipes_hsok
ENSDARG00000002215	rtca	100	79.121	ENSOMEG00000000756	rtca	100	79.121	Oryzias_melastigma
ENSDARG00000002215	rtca	100	67.213	ENSOGAG00000005627	RTCA	100	67.213	Otolemur_garnettii
ENSDARG00000002215	rtca	87	74.528	ENSOARG00000018122	RTCA	100	74.528	Ovis_aries
ENSDARG00000002215	rtca	100	70.976	ENSPPAG00000035119	RTCA	100	73.463	Pan_paniscus
ENSDARG00000002215	rtca	100	74.044	ENSPPRG00000000350	RTCA	100	74.044	Panthera_pardus
ENSDARG00000002215	rtca	100	73.497	ENSPTIG00000012816	RTCA	100	73.497	Panthera_tigris_altaica
ENSDARG00000002215	rtca	100	70.976	ENSPTRG00000001004	RTCA	100	73.463	Pan_troglodytes
ENSDARG00000002215	rtca	100	73.497	ENSPANG00000000346	RTCA	100	73.497	Papio_anubis
ENSDARG00000002215	rtca	100	88.187	ENSPKIG00000001653	rtca	100	88.187	Paramormyrops_kingsleyae
ENSDARG00000002215	rtca	100	70.137	ENSPSIG00000011408	RTCA	100	70.137	Pelodiscus_sinensis
ENSDARG00000002215	rtca	100	71.585	ENSPEMG00000018582	Rtca	100	71.585	Peromyscus_maniculatus_bairdii
ENSDARG00000002215	rtca	99	57.341	ENSPMAG00000009110	rtca	98	57.341	Petromyzon_marinus
ENSDARG00000002215	rtca	100	72.131	ENSPCIG00000007684	RTCA	100	72.131	Phascolarctos_cinereus
ENSDARG00000002215	rtca	100	78.356	ENSPFOG00000004824	rtca	100	78.356	Poecilia_formosa
ENSDARG00000002215	rtca	100	78.846	ENSPLAG00000011753	rtca	99	78.846	Poecilia_latipinna
ENSDARG00000002215	rtca	100	78.846	ENSPMEG00000020469	rtca	99	78.846	Poecilia_mexicana
ENSDARG00000002215	rtca	100	77.473	ENSPREG00000001365	rtca	99	77.473	Poecilia_reticulata
ENSDARG00000002215	rtca	100	73.770	ENSPPYG00000001115	RTCA	100	73.770	Pongo_abelii
ENSDARG00000002215	rtca	100	70.219	ENSPCAG00000005076	RTCA	100	70.219	Procavia_capensis
ENSDARG00000002215	rtca	100	74.590	ENSPCOG00000005603	RTCA	100	74.590	Propithecus_coquereli
ENSDARG00000002215	rtca	100	69.393	ENSPVAG00000009478	RTCA	100	69.393	Pteropus_vampyrus
ENSDARG00000002215	rtca	100	79.670	ENSPNYG00000004722	rtca	99	79.670	Pundamilia_nyererei
ENSDARG00000002215	rtca	100	91.758	ENSPNAG00000022270	rtca	100	91.758	Pygocentrus_nattereri
ENSDARG00000002215	rtca	100	70.492	ENSRNOG00000014575	Rtca	100	70.492	Rattus_norvegicus
ENSDARG00000002215	rtca	100	70.712	ENSRBIG00000041180	RTCA	100	73.139	Rhinopithecus_bieti
ENSDARG00000002215	rtca	100	73.224	ENSRROG00000024929	RTCA	100	73.224	Rhinopithecus_roxellana
ENSDARG00000002215	rtca	100	72.678	ENSSBOG00000028626	RTCA	100	72.678	Saimiri_boliviensis_boliviensis
ENSDARG00000002215	rtca	100	72.678	ENSSHAG00000001758	RTCA	100	72.678	Sarcophilus_harrisii
ENSDARG00000002215	rtca	98	77.374	ENSSMAG00000014680	rtca	97	77.374	Scophthalmus_maximus
ENSDARG00000002215	rtca	98	81.285	ENSSDUG00000015585	rtca	98	80.663	Seriola_dumerili
ENSDARG00000002215	rtca	96	81.662	ENSSLDG00000018985	rtca	95	81.662	Seriola_lalandi_dorsalis
ENSDARG00000002215	rtca	87	68.770	ENSSARG00000013993	RTCA	100	68.770	Sorex_araneus
ENSDARG00000002215	rtca	100	79.121	ENSSPAG00000011938	rtca	99	79.121	Stegastes_partitus
ENSDARG00000002215	rtca	100	72.951	ENSSSCG00000006865	RTCA	100	72.951	Sus_scrofa
ENSDARG00000002215	rtca	100	70.959	ENSTGUG00000005154	RTCA	100	70.959	Taeniopygia_guttata
ENSDARG00000002215	rtca	100	79.670	ENSTRUG00000008799	rtca	100	79.670	Takifugu_rubripes
ENSDARG00000002215	rtca	100	79.121	ENSTNIG00000004725	rtca	100	79.121	Tetraodon_nigroviridis
ENSDARG00000002215	rtca	58	60.952	ENSTBEG00000000943	RTCA	59	60.952	Tupaia_belangeri
ENSDARG00000002215	rtca	100	71.240	ENSTTRG00000015327	RTCA	100	71.240	Tursiops_truncatus
ENSDARG00000002215	rtca	96	70.940	ENSUAMG00000017265	RTCA	99	70.940	Ursus_americanus
ENSDARG00000002215	rtca	100	72.678	ENSUMAG00000007881	RTCA	100	72.678	Ursus_maritimus
ENSDARG00000002215	rtca	87	65.300	ENSVPAG00000001039	RTCA	84	65.300	Vicugna_pacos
ENSDARG00000002215	rtca	100	73.770	ENSVVUG00000022041	RTCA	68	73.770	Vulpes_vulpes
ENSDARG00000002215	rtca	98	58.449	ENSXETG00000031661	RTCA	98	58.449	Xenopus_tropicalis
ENSDARG00000002215	rtca	100	67.308	ENSXCOG00000008002	rtca	100	67.308	Xiphophorus_couchianus
ENSDARG00000002215	rtca	100	78.297	ENSXMAG00000005482	rtca	99	78.297	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0003963	RNA-3'-phosphate cyclase activity	21873635.	IBA	Function
GO:0003963	RNA-3'-phosphate cyclase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006396	RNA processing	-	IEA	Process