EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000002339 (Gene tree)
Gene ID: 449813
Gene Symbol: sgf29
Alias: ccdc101|zgc:103544
Full Name: SAGA complex associated factor 29
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 6886 bases
Position: chr3:15489725-15496610
Accession: ZDB-GENE-041010-62
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000002714	DUF1325	PF07039.11	7.8e-40	1	1
ENSDARP00000114577	DUF1325	PF07039.11	5.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000144369	-	867	-	ENSDARP00000114577	213 (aa)	-	E9QF09
ENSDART00000124063	-	769	-	ENSDARP00000107940	177 (aa)	-	E9QD08
ENSDART00000007726	-	1359	XM_005163810	ENSDARP00000002714	293 (aa)	XP_005163867	F1QQW7

Gene Model

Click here to download ENSDARG00000002339's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000002339's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000002339	sgf29	100	91.126	ENSG00000176476	SGF29	100	91.126	Homo_sapiens
ENSDARG00000002339	sgf29	99	97.586	ENSAPOG00000007072	sgf29	100	97.586	Acanthochromis_polyacanthus
ENSDARG00000002339	sgf29	100	89.420	ENSAMEG00000015388	SGF29	100	89.420	Ailuropoda_melanoleuca
ENSDARG00000002339	sgf29	85	97.189	ENSACIG00000024432	sgf29	100	97.189	Amphilophus_citrinellus
ENSDARG00000002339	sgf29	99	97.931	ENSAOCG00000013494	sgf29	100	97.931	Amphiprion_ocellaris
ENSDARG00000002339	sgf29	99	97.143	ENSAPEG00000007284	sgf29	93	97.619	Amphiprion_percula
ENSDARG00000002339	sgf29	99	97.931	ENSATEG00000017566	sgf29	100	97.931	Anabas_testudineus
ENSDARG00000002339	sgf29	100	92.833	ENSACAG00000006595	SGF29	100	92.833	Anolis_carolinensis
ENSDARG00000002339	sgf29	100	91.126	ENSANAG00000037641	-	100	91.126	Aotus_nancymaae
ENSDARG00000002339	sgf29	100	76.995	ENSANAG00000032813	-	93	81.277	Aotus_nancymaae
ENSDARG00000002339	sgf29	100	78.873	ENSANAG00000023337	-	93	78.082	Aotus_nancymaae
ENSDARG00000002339	sgf29	99	96.207	ENSACLG00000016730	sgf29	100	96.207	Astatotilapia_calliptera
ENSDARG00000002339	sgf29	100	95.652	ENSAMXG00000003395	sgf29	100	95.652	Astyanax_mexicanus
ENSDARG00000002339	sgf29	100	92.150	ENSBTAG00000016883	SGF29	100	92.150	Bos_taurus
ENSDARG00000002339	sgf29	78	39.474	WBGene00021205	Y17G9B.8	89	39.474	Caenorhabditis_elegans
ENSDARG00000002339	sgf29	100	91.126	ENSCJAG00000006577	SGF29	100	91.126	Callithrix_jacchus
ENSDARG00000002339	sgf29	100	91.080	ENSCAFG00000017127	SGF29	92	92.199	Canis_familiaris
ENSDARG00000002339	sgf29	100	91.080	ENSCAFG00020017597	SGF29	92	92.199	Canis_lupus_dingo
ENSDARG00000002339	sgf29	100	92.150	ENSCHIG00000015325	SGF29	100	92.150	Capra_hircus
ENSDARG00000002339	sgf29	100	91.809	ENSTSYG00000025878	-	100	91.809	Carlito_syrichta
ENSDARG00000002339	sgf29	84	89.431	ENSTSYG00000003314	-	97	89.431	Carlito_syrichta
ENSDARG00000002339	sgf29	89	81.250	ENSCAPG00000000732	SGF29	96	80.162	Cavia_aperea
ENSDARG00000002339	sgf29	100	91.468	ENSCPOG00000027037	SGF29	100	91.468	Cavia_porcellus
ENSDARG00000002339	sgf29	100	70.423	ENSCCAG00000027313	-	66	70.205	Cebus_capucinus
ENSDARG00000002339	sgf29	100	91.126	ENSCCAG00000027359	-	100	91.126	Cebus_capucinus
ENSDARG00000002339	sgf29	100	91.126	ENSCATG00000034020	SGF29	100	91.126	Cercocebus_atys
ENSDARG00000002339	sgf29	100	91.809	ENSCLAG00000011510	SGF29	100	91.809	Chinchilla_lanigera
ENSDARG00000002339	sgf29	100	86.288	ENSCSAG00000006259	SGF29	100	86.288	Chlorocebus_sabaeus
ENSDARG00000002339	sgf29	100	53.521	ENSCHOG00000013831	-	100	60.000	Choloepus_hoffmanni
ENSDARG00000002339	sgf29	100	92.150	ENSCPBG00000012638	SGF29	85	92.150	Chrysemys_picta_bellii
ENSDARG00000002339	sgf29	99	62.284	ENSCING00000012953	-	99	62.284	Ciona_intestinalis
ENSDARG00000002339	sgf29	99	57.143	ENSCSAVG00000007328	-	87	57.143	Ciona_savignyi
ENSDARG00000002339	sgf29	100	89.671	ENSCANG00000039654	SGF29	100	90.361	Colobus_angolensis_palliatus
ENSDARG00000002339	sgf29	100	92.150	ENSCGRG00001016730	-	100	92.150	Cricetulus_griseus_chok1gshd
ENSDARG00000002339	sgf29	100	87.415	ENSCGRG00001014941	-	100	87.415	Cricetulus_griseus_chok1gshd
ENSDARG00000002339	sgf29	100	91.809	ENSCGRG00000003808	Sgf29	100	91.809	Cricetulus_griseus_crigri
ENSDARG00000002339	sgf29	82	96.680	ENSCSEG00000010575	sgf29	87	95.510	Cynoglossus_semilaevis
ENSDARG00000002339	sgf29	99	97.241	ENSCVAG00000014381	sgf29	100	97.241	Cyprinodon_variegatus
ENSDARG00000002339	sgf29	100	92.150	ENSDNOG00000048338	SGF29	99	92.150	Dasypus_novemcinctus
ENSDARG00000002339	sgf29	100	91.809	ENSDORG00000007002	Sgf29	100	91.809	Dipodomys_ordii
ENSDARG00000002339	sgf29	98	49.653	FBgn0050390	Sgf29	94	49.653	Drosophila_melanogaster
ENSDARG00000002339	sgf29	99	81.849	ENSEBUG00000008631	sgf29	98	81.849	Eptatretus_burgeri
ENSDARG00000002339	sgf29	92	92.565	ENSEASG00005014751	SGF29	91	92.565	Equus_asinus_asinus
ENSDARG00000002339	sgf29	100	92.150	ENSECAG00000011445	SGF29	95	92.150	Equus_caballus
ENSDARG00000002339	sgf29	91	92.537	ENSEEUG00000008521	SGF29	100	92.537	Erinaceus_europaeus
ENSDARG00000002339	sgf29	99	97.586	ENSELUG00000023888	sgf29	100	97.586	Esox_lucius
ENSDARG00000002339	sgf29	100	92.150	ENSFCAG00000012297	SGF29	100	92.150	Felis_catus
ENSDARG00000002339	sgf29	100	92.150	ENSFDAG00000012928	SGF29	100	92.150	Fukomys_damarensis
ENSDARG00000002339	sgf29	99	95.238	ENSFHEG00000022427	sgf29	93	96.032	Fundulus_heteroclitus
ENSDARG00000002339	sgf29	99	94.502	ENSGMOG00000000328	sgf29	100	94.502	Gadus_morhua
ENSDARG00000002339	sgf29	100	88.737	ENSGALG00000020590	SGF29	100	88.737	Gallus_gallus
ENSDARG00000002339	sgf29	99	97.931	ENSGAFG00000020626	sgf29	100	97.931	Gambusia_affinis
ENSDARG00000002339	sgf29	99	94.828	ENSGACG00000015001	sgf29	100	94.828	Gasterosteus_aculeatus
ENSDARG00000002339	sgf29	100	92.491	ENSGAGG00000012655	SGF29	100	92.491	Gopherus_agassizii
ENSDARG00000002339	sgf29	100	90.785	ENSGGOG00000000807	-	100	90.785	Gorilla_gorilla
ENSDARG00000002339	sgf29	73	89.744	ENSHBUG00000013677	sgf29	94	80.932	Haplochromis_burtoni
ENSDARG00000002339	sgf29	100	91.809	ENSHGLG00000014468	SGF29	100	91.809	Heterocephalus_glaber_female
ENSDARG00000002339	sgf29	100	91.809	ENSHGLG00100000132	SGF29	100	91.809	Heterocephalus_glaber_male
ENSDARG00000002339	sgf29	99	95.172	ENSHCOG00000002018	sgf29	100	95.172	Hippocampus_comes
ENSDARG00000002339	sgf29	100	98.294	ENSIPUG00000001851	sgf29	100	98.294	Ictalurus_punctatus
ENSDARG00000002339	sgf29	100	92.150	ENSSTOG00000013258	SGF29	100	92.150	Ictidomys_tridecemlineatus
ENSDARG00000002339	sgf29	100	92.150	ENSJJAG00000009013	Sgf29	100	92.150	Jaculus_jaculus
ENSDARG00000002339	sgf29	99	95.862	ENSKMAG00000004341	sgf29	99	95.862	Kryptolebias_marmoratus
ENSDARG00000002339	sgf29	85	96.800	ENSLBEG00000006754	sgf29	100	96.800	Labrus_bergylta
ENSDARG00000002339	sgf29	83	76.955	ENSLACG00000005336	SGF29	99	76.955	Latimeria_chalumnae
ENSDARG00000002339	sgf29	100	92.150	ENSLAFG00000028439	SGF29	100	92.150	Loxodonta_africana
ENSDARG00000002339	sgf29	100	91.126	ENSMFAG00000038040	SGF29	100	91.126	Macaca_fascicularis
ENSDARG00000002339	sgf29	100	91.126	ENSMMUG00000011370	SGF29	100	91.126	Macaca_mulatta
ENSDARG00000002339	sgf29	100	90.785	ENSMNEG00000043534	SGF29	100	90.785	Macaca_nemestrina
ENSDARG00000002339	sgf29	100	91.126	ENSMLEG00000031039	SGF29	100	91.126	Mandrillus_leucophaeus
ENSDARG00000002339	sgf29	99	97.931	ENSMAMG00000017907	sgf29	100	97.931	Mastacembelus_armatus
ENSDARG00000002339	sgf29	99	96.207	ENSMZEG00005001194	sgf29	100	96.207	Maylandia_zebra
ENSDARG00000002339	sgf29	99	96.207	ENSMZEG00005002947	sgf29	100	96.207	Maylandia_zebra
ENSDARG00000002339	sgf29	100	88.737	ENSMGAG00000012201	SGF29	100	88.737	Meleagris_gallopavo
ENSDARG00000002339	sgf29	100	92.150	ENSMAUG00000011063	Sgf29	100	92.150	Mesocricetus_auratus
ENSDARG00000002339	sgf29	100	91.809	ENSMICG00000009973	SGF29	100	91.809	Microcebus_murinus
ENSDARG00000002339	sgf29	100	92.150	ENSMOCG00000021358	Sgf29	100	92.150	Microtus_ochrogaster
ENSDARG00000002339	sgf29	85	94.071	ENSMMOG00000012706	sgf29	100	94.071	Mola_mola
ENSDARG00000002339	sgf29	100	92.150	ENSMODG00000015642	SGF29	100	92.150	Monodelphis_domestica
ENSDARG00000002339	sgf29	99	97.931	ENSMALG00000000231	sgf29	96	97.931	Monopterus_albus
ENSDARG00000002339	sgf29	100	91.468	MGP_CAROLIEiJ_G0030456	Sgf29	100	91.468	Mus_caroli
ENSDARG00000002339	sgf29	100	91.468	ENSMUSG00000030714	Sgf29	100	91.468	Mus_musculus
ENSDARG00000002339	sgf29	100	91.468	MGP_PahariEiJ_G0013666	Sgf29	100	91.468	Mus_pahari
ENSDARG00000002339	sgf29	100	91.468	MGP_SPRETEiJ_G0031570	Sgf29	100	91.468	Mus_spretus
ENSDARG00000002339	sgf29	100	92.150	ENSMPUG00000012669	SGF29	100	92.150	Mustela_putorius_furo
ENSDARG00000002339	sgf29	100	92.150	ENSMLUG00000022554	SGF29	100	92.150	Myotis_lucifugus
ENSDARG00000002339	sgf29	100	91.809	ENSNGAG00000022634	Sgf29	100	91.809	Nannospalax_galili
ENSDARG00000002339	sgf29	85	96.787	ENSNBRG00000020775	sgf29	100	96.787	Neolamprologus_brichardi
ENSDARG00000002339	sgf29	100	87.793	ENSNLEG00000001604	SGF29	99	80.822	Nomascus_leucogenys
ENSDARG00000002339	sgf29	76	94.667	ENSMEUG00000006221	SGF29	76	94.667	Notamacropus_eugenii
ENSDARG00000002339	sgf29	100	92.491	ENSOPRG00000009316	SGF29	100	92.491	Ochotona_princeps
ENSDARG00000002339	sgf29	100	91.468	ENSODEG00000013702	SGF29	100	91.468	Octodon_degus
ENSDARG00000002339	sgf29	99	96.220	ENSONIG00000009377	sgf29	100	96.220	Oreochromis_niloticus
ENSDARG00000002339	sgf29	73	90.385	ENSOANG00000009696	SGF29	100	91.414	Ornithorhynchus_anatinus
ENSDARG00000002339	sgf29	92	92.222	ENSOCUG00000025361	-	100	92.222	Oryctolagus_cuniculus
ENSDARG00000002339	sgf29	83	71.311	ENSOCUG00000021684	-	100	71.311	Oryctolagus_cuniculus
ENSDARG00000002339	sgf29	99	96.552	ENSORLG00000027873	sgf29	100	96.552	Oryzias_latipes
ENSDARG00000002339	sgf29	99	96.552	ENSORLG00020020976	-	100	96.552	Oryzias_latipes_hni
ENSDARG00000002339	sgf29	99	96.552	ENSORLG00015011795	sgf29	100	96.552	Oryzias_latipes_hsok
ENSDARG00000002339	sgf29	99	96.897	ENSOMEG00000020118	sgf29	100	96.897	Oryzias_melastigma
ENSDARG00000002339	sgf29	100	60.544	ENSOGAG00000034571	-	100	60.544	Otolemur_garnettii
ENSDARG00000002339	sgf29	100	85.324	ENSOGAG00000015794	-	100	85.324	Otolemur_garnettii
ENSDARG00000002339	sgf29	100	92.150	ENSOARG00000003226	SGF29	100	92.150	Ovis_aries
ENSDARG00000002339	sgf29	100	90.141	ENSPPAG00000039380	SGF29	98	90.496	Pan_paniscus
ENSDARG00000002339	sgf29	100	92.150	ENSPPRG00000006831	SGF29	100	92.150	Panthera_pardus
ENSDARG00000002339	sgf29	100	92.150	ENSPTIG00000014381	SGF29	100	92.150	Panthera_tigris_altaica
ENSDARG00000002339	sgf29	100	69.283	ENSPTRG00000007925	SGF29	100	69.900	Pan_troglodytes
ENSDARG00000002339	sgf29	100	91.126	ENSPANG00000019684	SGF29	100	91.126	Papio_anubis
ENSDARG00000002339	sgf29	100	96.244	ENSPKIG00000018503	sgf29	100	92.833	Paramormyrops_kingsleyae
ENSDARG00000002339	sgf29	99	88.966	ENSPMGG00000006683	sgf29	99	88.966	Periophthalmus_magnuspinnatus
ENSDARG00000002339	sgf29	100	92.150	ENSPCIG00000025200	SGF29	100	92.150	Phascolarctos_cinereus
ENSDARG00000002339	sgf29	99	98.276	ENSPFOG00000010035	sgf29	99	98.276	Poecilia_formosa
ENSDARG00000002339	sgf29	99	98.276	ENSPLAG00000000559	sgf29	100	98.276	Poecilia_latipinna
ENSDARG00000002339	sgf29	99	98.276	ENSPMEG00000007026	sgf29	100	98.276	Poecilia_mexicana
ENSDARG00000002339	sgf29	99	97.931	ENSPREG00000011868	sgf29	100	97.931	Poecilia_reticulata
ENSDARG00000002339	sgf29	100	91.126	ENSPPYG00000007233	SGF29	100	91.126	Pongo_abelii
ENSDARG00000002339	sgf29	100	91.809	ENSPCOG00000028233	SGF29	100	91.809	Propithecus_coquereli
ENSDARG00000002339	sgf29	99	95.238	ENSPNYG00000012353	sgf29	100	96.787	Pundamilia_nyererei
ENSDARG00000002339	sgf29	85	99.197	ENSPNAG00000014651	sgf29	100	99.197	Pygocentrus_nattereri
ENSDARG00000002339	sgf29	100	91.809	ENSRNOG00000019245	Sgf29	100	91.809	Rattus_norvegicus
ENSDARG00000002339	sgf29	100	91.126	ENSRBIG00000041003	SGF29	100	91.126	Rhinopithecus_bieti
ENSDARG00000002339	sgf29	100	91.126	ENSRROG00000044894	SGF29	100	91.126	Rhinopithecus_roxellana
ENSDARG00000002339	sgf29	91	91.353	ENSSBOG00000008004	SGF29	100	91.165	Saimiri_boliviensis_boliviensis
ENSDARG00000002339	sgf29	81	63.291	ENSSHAG00000002930	-	100	63.291	Sarcophilus_harrisii
ENSDARG00000002339	sgf29	100	92.150	ENSSHAG00000011279	-	100	92.150	Sarcophilus_harrisii
ENSDARG00000002339	sgf29	100	90.785	ENSSFOG00015001254	sgf29	100	90.785	Scleropages_formosus
ENSDARG00000002339	sgf29	99	97.241	ENSSMAG00000016613	sgf29	100	97.241	Scophthalmus_maximus
ENSDARG00000002339	sgf29	99	97.931	ENSSDUG00000005977	sgf29	100	97.931	Seriola_dumerili
ENSDARG00000002339	sgf29	99	97.931	ENSSLDG00000012446	sgf29	100	97.931	Seriola_lalandi_dorsalis
ENSDARG00000002339	sgf29	100	92.150	ENSSPUG00000010121	SGF29	100	92.150	Sphenodon_punctatus
ENSDARG00000002339	sgf29	99	97.931	ENSSPAG00000018994	sgf29	100	97.931	Stegastes_partitus
ENSDARG00000002339	sgf29	100	92.150	ENSSSCG00000022778	SGF29	100	92.150	Sus_scrofa
ENSDARG00000002339	sgf29	99	95.517	ENSTNIG00000001984	sgf29	99	95.517	Tetraodon_nigroviridis
ENSDARG00000002339	sgf29	96	94.326	ENSTNIG00000006496	SGF29	100	94.326	Tetraodon_nigroviridis
ENSDARG00000002339	sgf29	100	91.080	ENSUAMG00000010172	SGF29	85	92.565	Ursus_americanus
ENSDARG00000002339	sgf29	88	91.860	ENSUMAG00000010966	SGF29	79	91.860	Ursus_maritimus
ENSDARG00000002339	sgf29	100	92.833	ENSXETG00000033185	sgf29	100	92.833	Xenopus_tropicalis
ENSDARG00000002339	sgf29	99	97.938	ENSXCOG00000011501	sgf29	100	97.938	Xiphophorus_couchianus
ENSDARG00000002339	sgf29	99	98.276	ENSXMAG00000010932	sgf29	100	98.276	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000124	SAGA complex	21873635.	IBA	Component
GO:0000124	SAGA complex	-	IEA	Component
GO:0001135	RNA polymerase II transcription regulator recruiting activity	21873635.	IBA	Function
GO:0005671	Ada2/Gcn5/Ada3 transcription activator complex	21873635.	IBA	Component
GO:0035064	methylated histone binding	21873635.	IBA	Function
GO:0043966	histone H3 acetylation	21873635.	IBA	Process