EuRBPDB

Description

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000002344 (Gene tree)
Gene ID: 336681
Gene Symbol: tubb4b
Alias: fa91f09|fb16e09|tubb2|tubb2c|wu:fa91f09|wu:fa92d05|wu:fb16e09|wu:fb97a11
Full Name: tubulin%2C beta 4B class IVb
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 3712
Position: chr14: 5861435-5865146
Accession: ZDB-GENE-030131-8625
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000041279	-	1615	-	ENSDARP00000041278	445 (aa)	-	Q6P5M9
ENSDART00000147341	-	559	-	ENSDARP00000139366	114 (aa)	-	A0A0R4IXL7

Gene Model

Click here to download ENSDARG00000002344's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre04145	Phagosome	KEGG
dre04540	Gap junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000002344's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000002344	tubb4b	99	94.344	WBGene00006538	tbb-4	97	95.814	Caenorhabditis_elegans
ENSDARG00000002344	tubb4b	100	98.876	ENSG00000188229	TUBB4B	100	98.876	Homo_sapiens
ENSDARG00000002344	tubb4b	100	98.876	ENSMUSG00000036752	Tubb4b	100	98.876	Mus_musculus
ENSDARG00000002344	tubb4b	99	75.737	YFL037W	TUB2	94	76.923	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000226	microtubule cytoskeleton organization	21873635.	IBA	Process
GO:0000278	mitotic cell cycle	21873635.	IBA	Process
GO:0003924	GTPase activity	-	IEA	Function
GO:0005200	structural constituent of cytoskeleton	21873635.	IBA	Function
GO:0005200	structural constituent of cytoskeleton	-	IEA	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005874	microtubule	21873635.	IBA	Component
GO:0005874	microtubule	-	IEA	Component
GO:0007017	microtubule-based process	21873635.	IBA	Process
GO:0007017	microtubule-based process	-	IEA	Process
GO:0060271	cilium assembly	27903883.	IMP	Process