EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000002402 (Gene tree)
Gene ID: 324323
Gene Symbol: ercc3
Alias: wu:fc25f08|xpb
Full Name: excision repair cross-complementation group 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 34668 bases
Position: chr6:9595414-9630081
Accession: ZDB-GENE-030131-3043
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000010637	ResIII	PF04851.15	1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000013066	-	2759	-	ENSDARP00000010637	782 (aa)	-	F1R685

Gene Model

Click here to download ENSDARG00000002402's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03022	Basal transcription factors	KEGG
dre03420	Nucleotide excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000002402's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000002402	ercc3	100	88.153	ENSG00000163161	ERCC3	99	97.516	Homo_sapiens
ENSDARG00000002402	ercc3	100	92.985	ENSAPOG00000014383	ercc3	97	94.063	Acanthochromis_polyacanthus
ENSDARG00000002402	ercc3	100	87.389	ENSAMEG00000016840	ERCC3	96	89.432	Ailuropoda_melanoleuca
ENSDARG00000002402	ercc3	99	92.139	ENSACIG00000000126	ercc3	99	91.678	Amphilophus_citrinellus
ENSDARG00000002402	ercc3	100	92.337	ENSAOCG00000009396	ercc3	97	93.931	Amphiprion_ocellaris
ENSDARG00000002402	ercc3	100	92.337	ENSAPEG00000023077	ercc3	97	93.931	Amphiprion_percula
ENSDARG00000002402	ercc3	100	93.240	ENSATEG00000014860	ercc3	98	93.750	Anabas_testudineus
ENSDARG00000002402	ercc3	91	89.718	ENSAPLG00000012068	ERCC3	98	89.718	Anas_platyrhynchos
ENSDARG00000002402	ercc3	92	89.736	ENSACAG00000009919	ERCC3	100	89.736	Anolis_carolinensis
ENSDARG00000002402	ercc3	100	88.025	ENSANAG00000031091	ERCC3	96	89.007	Aotus_nancymaae
ENSDARG00000002402	ercc3	100	92.857	ENSACLG00000022508	ercc3	98	93.099	Astatotilapia_calliptera
ENSDARG00000002402	ercc3	100	93.223	ENSAMXG00000036947	ercc3	98	93.864	Astyanax_mexicanus
ENSDARG00000002402	ercc3	100	87.771	ENSBTAG00000020777	ERCC3	96	89.007	Bos_taurus
ENSDARG00000002402	ercc3	99	62.453	WBGene00013441	xpb-1	96	63.979	Caenorhabditis_elegans
ENSDARG00000002402	ercc3	100	88.153	ENSCJAG00000010416	ERCC3	96	89.139	Callithrix_jacchus
ENSDARG00000002402	ercc3	97	89.432	ENSCAFG00000004497	ERCC3	97	89.432	Canis_familiaris
ENSDARG00000002402	ercc3	97	89.432	ENSCAFG00020003495	ERCC3	97	89.432	Canis_lupus_dingo
ENSDARG00000002402	ercc3	100	88.153	ENSCHIG00000014551	ERCC3	96	89.272	Capra_hircus
ENSDARG00000002402	ercc3	99	87.113	ENSTSYG00000004137	ERCC3	97	88.609	Carlito_syrichta
ENSDARG00000002402	ercc3	78	80.524	ENSCAPG00000017027	ERCC3	93	80.261	Cavia_aperea
ENSDARG00000002402	ercc3	100	85.987	ENSCPOG00000002144	ERCC3	96	88.344	Cavia_porcellus
ENSDARG00000002402	ercc3	100	88.153	ENSCCAG00000024421	ERCC3	96	89.139	Cebus_capucinus
ENSDARG00000002402	ercc3	100	88.153	ENSCATG00000032313	ERCC3	96	89.139	Cercocebus_atys
ENSDARG00000002402	ercc3	100	86.879	ENSCLAG00000002965	ERCC3	92	88.742	Chinchilla_lanigera
ENSDARG00000002402	ercc3	100	88.025	ENSCSAG00000016827	ERCC3	96	89.007	Chlorocebus_sabaeus
ENSDARG00000002402	ercc3	83	95.322	ENSCHOG00000007414	ERCC3	79	95.322	Choloepus_hoffmanni
ENSDARG00000002402	ercc3	92	90.153	ENSCPBG00000013638	ERCC3	100	89.875	Chrysemys_picta_bellii
ENSDARG00000002402	ercc3	96	72.005	ENSCING00000002867	ercc3	96	72.063	Ciona_intestinalis
ENSDARG00000002402	ercc3	100	88.280	ENSCANG00000007094	ERCC3	96	89.272	Colobus_angolensis_palliatus
ENSDARG00000002402	ercc3	100	87.516	ENSCGRG00001009426	Ercc3	96	89.404	Cricetulus_griseus_chok1gshd
ENSDARG00000002402	ercc3	97	87.254	ENSCGRG00000015547	Ercc3	96	89.193	Cricetulus_griseus_crigri
ENSDARG00000002402	ercc3	100	90.701	ENSCSEG00000016479	ercc3	97	91.953	Cynoglossus_semilaevis
ENSDARG00000002402	ercc3	100	92.347	ENSCVAG00000015177	ercc3	98	92.708	Cyprinodon_variegatus
ENSDARG00000002402	ercc3	56	92.760	ENSDNOG00000035027	ERCC3	95	92.760	Dasypus_novemcinctus
ENSDARG00000002402	ercc3	96	89.801	ENSDORG00000004671	Ercc3	97	89.801	Dipodomys_ordii
ENSDARG00000002402	ercc3	99	68.546	FBgn0001179	hay	94	70.026	Drosophila_melanogaster
ENSDARG00000002402	ercc3	90	89.809	ENSETEG00000019887	ERCC3	86	89.809	Echinops_telfairi
ENSDARG00000002402	ercc3	100	80.227	ENSEBUG00000009773	ercc3	95	82.322	Eptatretus_burgeri
ENSDARG00000002402	ercc3	100	85.342	ENSEASG00005022466	ERCC3	93	89.362	Equus_asinus_asinus
ENSDARG00000002402	ercc3	100	88.025	ENSECAG00000006589	ERCC3	96	89.139	Equus_caballus
ENSDARG00000002402	ercc3	93	88.493	ENSEEUG00000001057	ERCC3	97	89.592	Erinaceus_europaeus
ENSDARG00000002402	ercc3	100	91.210	ENSELUG00000000089	ercc3	96	92.338	Esox_lucius
ENSDARG00000002402	ercc3	100	86.879	ENSFCAG00000006989	ERCC3	96	88.507	Felis_catus
ENSDARG00000002402	ercc3	99	87.742	ENSFALG00000003936	ERCC3	96	88.492	Ficedula_albicollis
ENSDARG00000002402	ercc3	100	86.115	ENSFDAG00000011924	ERCC3	96	88.609	Fukomys_damarensis
ENSDARG00000002402	ercc3	100	91.454	ENSFHEG00000005185	ercc3	98	91.667	Fundulus_heteroclitus
ENSDARG00000002402	ercc3	100	89.514	ENSGMOG00000018032	ercc3	96	89.934	Gadus_morhua
ENSDARG00000002402	ercc3	96	89.139	ENSGALG00000011515	ERCC3	97	89.139	Gallus_gallus
ENSDARG00000002402	ercc3	100	91.709	ENSGAFG00000011936	ercc3	98	92.057	Gambusia_affinis
ENSDARG00000002402	ercc3	100	91.730	ENSGACG00000015218	ercc3	99	92.033	Gasterosteus_aculeatus
ENSDARG00000002402	ercc3	92	90.291	ENSGAGG00000018579	ERCC3	100	90.014	Gopherus_agassizii
ENSDARG00000002402	ercc3	100	88.153	ENSGGOG00000015255	ERCC3	96	89.139	Gorilla_gorilla
ENSDARG00000002402	ercc3	100	92.857	ENSHBUG00000003818	ercc3	98	93.099	Haplochromis_burtoni
ENSDARG00000002402	ercc3	100	87.006	ENSHGLG00000011014	ERCC3	96	89.007	Heterocephalus_glaber_female
ENSDARG00000002402	ercc3	100	87.006	ENSHGLG00100013806	ERCC3	96	89.007	Heterocephalus_glaber_male
ENSDARG00000002402	ercc3	100	91.443	ENSHCOG00000016924	ercc3	98	91.656	Hippocampus_comes
ENSDARG00000002402	ercc3	100	92.839	ENSIPUG00000021000	ercc3	98	93.603	Ictalurus_punctatus
ENSDARG00000002402	ercc3	100	87.389	ENSSTOG00000011001	ERCC3	96	89.404	Ictidomys_tridecemlineatus
ENSDARG00000002402	ercc3	90	87.853	ENSJJAG00000001117	Ercc3	100	87.853	Jaculus_jaculus
ENSDARG00000002402	ercc3	100	91.826	ENSKMAG00000021764	ercc3	98	91.917	Kryptolebias_marmoratus
ENSDARG00000002402	ercc3	100	92.465	ENSLBEG00000000468	ercc3	97	93.263	Labrus_bergylta
ENSDARG00000002402	ercc3	96	85.770	ENSLACG00000014815	ERCC3	96	85.770	Latimeria_chalumnae
ENSDARG00000002402	ercc3	90	88.826	ENSLOCG00000010907	ercc3	87	88.826	Lepisosteus_oculatus
ENSDARG00000002402	ercc3	100	86.624	ENSLAFG00000014866	ERCC3	96	88.492	Loxodonta_africana
ENSDARG00000002402	ercc3	100	88.153	ENSMFAG00000003370	ERCC3	96	89.139	Macaca_fascicularis
ENSDARG00000002402	ercc3	100	84.403	ENSMNEG00000004215	ERCC3	91	90.968	Macaca_nemestrina
ENSDARG00000002402	ercc3	100	88.153	ENSMLEG00000042061	ERCC3	96	89.139	Mandrillus_leucophaeus
ENSDARG00000002402	ercc3	100	92.327	ENSMAMG00000004505	ercc3	98	92.689	Mastacembelus_armatus
ENSDARG00000002402	ercc3	100	92.857	ENSMZEG00005004854	ercc3	98	93.099	Maylandia_zebra
ENSDARG00000002402	ercc3	90	89.958	ENSMGAG00000011706	ERCC3	100	89.958	Meleagris_gallopavo
ENSDARG00000002402	ercc3	100	87.532	ENSMAUG00000004515	Ercc3	96	89.153	Mesocricetus_auratus
ENSDARG00000002402	ercc3	100	87.006	ENSMICG00000009578	ERCC3	96	89.007	Microcebus_murinus
ENSDARG00000002402	ercc3	100	87.389	ENSMOCG00000021767	Ercc3	96	89.272	Microtus_ochrogaster
ENSDARG00000002402	ercc3	99	91.613	ENSMMOG00000018174	ercc3	96	92.338	Mola_mola
ENSDARG00000002402	ercc3	96	89.536	ENSMODG00000018695	ERCC3	96	89.536	Monodelphis_domestica
ENSDARG00000002402	ercc3	100	91.443	ENSMALG00000014944	ercc3	98	92.318	Monopterus_albus
ENSDARG00000002402	ercc3	100	87.898	MGP_CAROLIEiJ_G0022075	Ercc3	96	89.564	Mus_caroli
ENSDARG00000002402	ercc3	100	87.659	ENSMUSG00000024382	Ercc3	96	88.522	Mus_musculus
ENSDARG00000002402	ercc3	100	87.643	MGP_PahariEiJ_G0018809	Ercc3	96	89.536	Mus_pahari
ENSDARG00000002402	ercc3	100	87.532	MGP_SPRETEiJ_G0022987	Ercc3	96	88.391	Mus_spretus
ENSDARG00000002402	ercc3	100	87.389	ENSMPUG00000012021	ERCC3	96	89.168	Mustela_putorius_furo
ENSDARG00000002402	ercc3	93	85.185	ENSMLUG00000007429	ERCC3	99	85.185	Myotis_lucifugus
ENSDARG00000002402	ercc3	99	85.077	ENSNGAG00000019598	Ercc3	96	90.948	Nannospalax_galili
ENSDARG00000002402	ercc3	100	92.857	ENSNBRG00000019074	ercc3	98	93.099	Neolamprologus_brichardi
ENSDARG00000002402	ercc3	92	86.944	ENSNLEG00000015665	ERCC3	97	86.944	Nomascus_leucogenys
ENSDARG00000002402	ercc3	100	85.860	ENSOPRG00000004553	ERCC3	96	86.887	Ochotona_princeps
ENSDARG00000002402	ercc3	100	87.389	ENSODEG00000005795	ERCC3	96	89.272	Octodon_degus
ENSDARG00000002402	ercc3	100	92.474	ENSONIG00000003255	ercc3	98	92.839	Oreochromis_niloticus
ENSDARG00000002402	ercc3	100	87.516	ENSOCUG00000002248	ERCC3	96	89.404	Oryctolagus_cuniculus
ENSDARG00000002402	ercc3	100	91.709	ENSORLG00000004393	ercc3	98	92.057	Oryzias_latipes
ENSDARG00000002402	ercc3	100	91.465	ENSORLG00020017718	ercc3	98	91.927	Oryzias_latipes_hni
ENSDARG00000002402	ercc3	100	91.454	ENSORLG00015015695	ercc3	98	91.797	Oryzias_latipes_hsok
ENSDARG00000002402	ercc3	100	91.837	ENSOMEG00000015374	ercc3	98	92.318	Oryzias_melastigma
ENSDARG00000002402	ercc3	100	86.912	ENSOGAG00000009103	ERCC3	96	88.771	Otolemur_garnettii
ENSDARG00000002402	ercc3	100	88.025	ENSOARG00000016147	ERCC3	96	89.272	Ovis_aries
ENSDARG00000002402	ercc3	100	88.153	ENSPPAG00000036166	ERCC3	96	89.139	Pan_paniscus
ENSDARG00000002402	ercc3	100	87.006	ENSPPRG00000001305	ERCC3	96	88.639	Panthera_pardus
ENSDARG00000002402	ercc3	92	88.904	ENSPTIG00000016969	ERCC3	100	88.904	Panthera_tigris_altaica
ENSDARG00000002402	ercc3	100	88.153	ENSPTRG00000046940	ERCC3	96	89.139	Pan_troglodytes
ENSDARG00000002402	ercc3	100	88.153	ENSPANG00000007699	ERCC3	96	89.139	Papio_anubis
ENSDARG00000002402	ercc3	100	92.720	ENSPKIG00000001319	ercc3	100	93.642	Paramormyrops_kingsleyae
ENSDARG00000002402	ercc3	92	89.875	ENSPSIG00000014682	ERCC3	100	89.598	Pelodiscus_sinensis
ENSDARG00000002402	ercc3	96	91.921	ENSPMGG00000017885	ercc3	96	91.921	Periophthalmus_magnuspinnatus
ENSDARG00000002402	ercc3	100	87.771	ENSPEMG00000013733	Ercc3	96	89.669	Peromyscus_maniculatus_bairdii
ENSDARG00000002402	ercc3	90	79.722	ENSPMAG00000005081	ercc3	99	79.583	Petromyzon_marinus
ENSDARG00000002402	ercc3	100	87.612	ENSPCIG00000011821	ERCC3	96	89.669	Phascolarctos_cinereus
ENSDARG00000002402	ercc3	98	92.068	ENSPFOG00000015604	ercc3	98	92.057	Poecilia_formosa
ENSDARG00000002402	ercc3	98	89.364	ENSPLAG00000022245	ercc3	100	92.798	Poecilia_latipinna
ENSDARG00000002402	ercc3	98	92.068	ENSPMEG00000016987	ercc3	98	92.057	Poecilia_mexicana
ENSDARG00000002402	ercc3	100	91.837	ENSPREG00000020921	ercc3	98	92.188	Poecilia_reticulata
ENSDARG00000002402	ercc3	100	87.405	ENSPPYG00000012769	ERCC3	96	88.360	Pongo_abelii
ENSDARG00000002402	ercc3	100	88.153	ENSPCOG00000024903	ERCC3	96	89.139	Propithecus_coquereli
ENSDARG00000002402	ercc3	90	87.597	ENSPVAG00000013774	ERCC3	86	87.597	Pteropus_vampyrus
ENSDARG00000002402	ercc3	100	92.857	ENSPNYG00000001208	ercc3	98	93.099	Pundamilia_nyererei
ENSDARG00000002402	ercc3	100	93.734	ENSPNAG00000005748	ercc3	97	95.099	Pygocentrus_nattereri
ENSDARG00000002402	ercc3	100	87.389	ENSRNOG00000013180	Ercc3	96	89.272	Rattus_norvegicus
ENSDARG00000002402	ercc3	100	88.153	ENSRBIG00000027692	ERCC3	96	89.139	Rhinopithecus_bieti
ENSDARG00000002402	ercc3	100	88.280	ENSRROG00000040673	ERCC3	96	89.272	Rhinopithecus_roxellana
ENSDARG00000002402	ercc3	92	56.054	YIL143C	SSL2	85	56.038	Saccharomyces_cerevisiae
ENSDARG00000002402	ercc3	100	87.771	ENSSBOG00000023079	ERCC3	96	88.742	Saimiri_boliviensis_boliviensis
ENSDARG00000002402	ercc3	96	89.669	ENSSHAG00000007423	ERCC3	96	89.669	Sarcophilus_harrisii
ENSDARG00000002402	ercc3	98	92.157	ENSSFOG00015012753	ercc3	96	92.583	Scleropages_formosus
ENSDARG00000002402	ercc3	100	91.233	ENSSMAG00000011915	ercc3	96	92.857	Scophthalmus_maximus
ENSDARG00000002402	ercc3	100	92.337	ENSSDUG00000021181	ercc3	98	92.960	Seriola_dumerili
ENSDARG00000002402	ercc3	100	92.337	ENSSLDG00000008744	ercc3	96	92.960	Seriola_lalandi_dorsalis
ENSDARG00000002402	ercc3	55	80.184	ENSSARG00000000751	-	85	80.184	Sorex_araneus
ENSDARG00000002402	ercc3	90	88.402	ENSSPUG00000015183	ERCC3	91	88.402	Sphenodon_punctatus
ENSDARG00000002402	ercc3	100	93.112	ENSSPAG00000004748	ercc3	97	94.327	Stegastes_partitus
ENSDARG00000002402	ercc3	100	86.752	ENSSSCG00000015721	ERCC3	95	92.941	Sus_scrofa
ENSDARG00000002402	ercc3	99	89.276	ENSTGUG00000004920	-	97	90.199	Taeniopygia_guttata
ENSDARG00000002402	ercc3	100	90.166	ENSTRUG00000017185	ercc3	97	91.270	Takifugu_rubripes
ENSDARG00000002402	ercc3	98	89.398	ENSTNIG00000005457	ercc3	99	89.564	Tetraodon_nigroviridis
ENSDARG00000002402	ercc3	80	89.013	ENSTBEG00000009381	ERCC3	81	89.013	Tupaia_belangeri
ENSDARG00000002402	ercc3	68	93.208	ENSUAMG00000009589	-	100	93.208	Ursus_americanus
ENSDARG00000002402	ercc3	100	87.261	ENSUMAG00000008361	ERCC3	96	89.168	Ursus_maritimus
ENSDARG00000002402	ercc3	92	89.598	ENSVVUG00000010431	ERCC3	100	89.598	Vulpes_vulpes
ENSDARG00000002402	ercc3	100	87.690	ENSXETG00000033646	ercc3	96	88.933	Xenopus_tropicalis
ENSDARG00000002402	ercc3	99	91.731	ENSXCOG00000001791	ercc3	99	91.786	Xiphophorus_couchianus
ENSDARG00000002402	ercc3	100	91.709	ENSXMAG00000003641	ercc3	98	92.057	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000112	nucleotide-excision repair factor 3 complex	21873635.	IBA	Component
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000439	transcription factor TFIIH core complex	21873635.	IBA	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0004003	ATP-dependent DNA helicase activity	21873635.	IBA	Function
GO:0004003	ATP-dependent DNA helicase activity	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005675	transcription factor TFIIH holo complex	21873635.	IBA	Component
GO:0005675	transcription factor TFIIH holo complex	-	ISS	Component
GO:0006265	DNA topological change	-	ISS	Process
GO:0006281	DNA repair	-	IEA	Process
GO:0006283	transcription-coupled nucleotide-excision repair	-	ISS	Process
GO:0006289	nucleotide-excision repair	-	IEA	Process
GO:0006366	transcription by RNA polymerase II	21873635.	IBA	Process
GO:0006366	transcription by RNA polymerase II	-	ISS	Process
GO:0006367	transcription initiation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0006367	transcription initiation from RNA polymerase II promoter	-	IEA	Process
GO:0006915	apoptotic process	-	ISS	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0008094	DNA-dependent ATPase activity	-	ISS	Function
GO:0008134	transcription factor binding	21873635.	IBA	Function
GO:0008353	RNA polymerase II CTD heptapeptide repeat kinase activity	21873635.	IBA	Function
GO:0008353	RNA polymerase II CTD heptapeptide repeat kinase activity	-	ISS	Function
GO:0009411	response to UV	21873635.	IBA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0033683	nucleotide-excision repair, DNA incision	21873635.	IBA	Process
GO:0043138	3'-5' DNA helicase activity	21873635.	IBA	Function
GO:0043138	3'-5' DNA helicase activity	-	ISS	Function
GO:0097550	transcriptional preinitiation complex	21873635.	IBA	Component