EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000002710 (Gene tree)
Gene ID: 767714
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 17440 bases
Position: chr22:36673312-36690751
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000109546	RRM_1	PF00076.22	1.7e-59	1	4
ENSDARP00000109546	RRM_1	PF00076.22	1.7e-59	2	4
ENSDARP00000109546	RRM_1	PF00076.22	1.7e-59	3	4
ENSDARP00000109546	RRM_1	PF00076.22	1.7e-59	4	4
ENSDARP00000013803	RRM_1	PF00076.22	1.7e-59	1	4
ENSDARP00000013803	RRM_1	PF00076.22	1.7e-59	2	4
ENSDARP00000013803	RRM_1	PF00076.22	1.7e-59	3	4
ENSDARP00000013803	RRM_1	PF00076.22	1.7e-59	4	4

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000130171	-	2671	-	ENSDARP00000111815	387 (aa)	-	E9QB18
ENSDART00000124698	-	3219	XM_005170547	ENSDARP00000109546	704 (aa)	XP_005170604	B8JLQ3
ENSDART00000141088	-	456	-	-	- (aa)	-	-
ENSDART00000017188	-	2826	-	ENSDARP00000013803	705 (aa)	-	F1R6L6
ENSDART00000147402	-	710	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000002710's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000002710's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000002710	ncl	79	30.337	ENSDARG00000059259	pabpc4	60	30.337
ENSDARG00000002710	ncl	65	30.986	ENSDARG00000014420	elavl3	78	30.986
ENSDARG00000002710	ncl	79	30.000	ENSDARG00000021140	pabpc1b	78	32.773
ENSDARG00000002710	ncl	56	35.577	ENSDARG00000007863	tra2a	61	36.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000002710	ncl	89	40.556	ENSAPOG00000014534	-	67	40.458	Acanthochromis_polyacanthus
ENSDARG00000002710	ncl	83	78.641	ENSAPOG00000023888	ncl	59	76.359	Acanthochromis_polyacanthus
ENSDARG00000002710	ncl	86	72.590	ENSACIG00000013234	ncl	62	73.867	Amphilophus_citrinellus
ENSDARG00000002710	ncl	83	77.994	ENSAOCG00000003133	ncl	60	75.294	Amphiprion_ocellaris
ENSDARG00000002710	ncl	89	39.444	ENSAOCG00000014792	-	61	39.642	Amphiprion_ocellaris
ENSDARG00000002710	ncl	83	77.994	ENSAPEG00000002769	ncl	59	75.236	Amphiprion_percula
ENSDARG00000002710	ncl	89	39.722	ENSAPEG00000013612	-	61	39.898	Amphiprion_percula
ENSDARG00000002710	ncl	92	43.008	ENSATEG00000019862	-	80	43.846	Anabas_testudineus
ENSDARG00000002710	ncl	80	77.670	ENSATEG00000013343	ncl	60	74.941	Anabas_testudineus
ENSDARG00000002710	ncl	84	60.182	ENSAPLG00000012897	-	52	61.415	Anas_platyrhynchos
ENSDARG00000002710	ncl	80	65.287	ENSACAG00000001006	-	52	63.802	Anolis_carolinensis
ENSDARG00000002710	ncl	79	71.803	ENSACLG00000026031	ncl	85	71.803	Astatotilapia_calliptera
ENSDARG00000002710	ncl	79	80.328	ENSAMXG00000001647	ncl	83	80.936	Astyanax_mexicanus
ENSDARG00000002710	ncl	79	42.628	ENSCHIG00000012665	-	52	42.857	Capra_hircus
ENSDARG00000002710	ncl	79	51.786	ENSCHIG00000003401	-	52	50.649	Capra_hircus
ENSDARG00000002710	ncl	81	65.714	ENSCPBG00000016444	-	51	65.287	Chrysemys_picta_bellii
ENSDARG00000002710	ncl	83	73.016	ENSCSEG00000015089	ncl	75	70.283	Cynoglossus_semilaevis
ENSDARG00000002710	ncl	79	78.065	ENSCVAG00000012600	ncl	61	74.941	Cyprinodon_variegatus
ENSDARG00000002710	ncl	98	45.932	ENSDNOG00000040257	-	71	47.045	Dasypus_novemcinctus
ENSDARG00000002710	ncl	88	47.697	ENSDNOG00000031611	-	70	47.403	Dasypus_novemcinctus
ENSDARG00000002710	ncl	84	50.733	ENSEBUG00000016173	ncl	72	45.895	Eptatretus_burgeri
ENSDARG00000002710	ncl	80	70.607	ENSELUG00000006033	ncl	52	70.833	Esox_lucius
ENSDARG00000002710	ncl	92	47.922	ENSELUG00000022826	-	80	50.798	Esox_lucius
ENSDARG00000002710	ncl	79	61.022	ENSFALG00000007592	-	54	57.895	Ficedula_albicollis
ENSDARG00000002710	ncl	83	73.701	ENSFHEG00000018000	ncl	65	70.686	Fundulus_heteroclitus
ENSDARG00000002710	ncl	82	65.506	ENSGMOG00000001341	ncl	66	64.762	Gadus_morhua
ENSDARG00000002710	ncl	82	76.527	ENSGAFG00000015375	ncl	63	69.593	Gambusia_affinis
ENSDARG00000002710	ncl	83	73.418	ENSGACG00000008970	ncl	66	71.429	Gasterosteus_aculeatus
ENSDARG00000002710	ncl	80	65.595	ENSGAGG00000013330	-	56	62.467	Gopherus_agassizii
ENSDARG00000002710	ncl	79	73.139	ENSHBUG00000006869	ncl	60	72.471	Haplochromis_burtoni
ENSDARG00000002710	ncl	90	71.347	ENSHCOG00000010234	ncl	60	71.963	Hippocampus_comes
ENSDARG00000002710	ncl	81	79.299	ENSIPUG00000024556	ncl	80	79.618	Ictalurus_punctatus
ENSDARG00000002710	ncl	79	76.699	ENSKMAG00000008111	ncl	58	76.699	Kryptolebias_marmoratus
ENSDARG00000002710	ncl	83	43.953	ENSLBEG00000014278	-	89	42.818	Labrus_bergylta
ENSDARG00000002710	ncl	83	77.670	ENSLBEG00000019073	ncl	62	75.656	Labrus_bergylta
ENSDARG00000002710	ncl	83	43.953	ENSLBEG00000007915	-	70	43.467	Labrus_bergylta
ENSDARG00000002710	ncl	80	57.325	ENSLACG00000022167	-	79	54.667	Latimeria_chalumnae
ENSDARG00000002710	ncl	82	70.032	ENSLACG00000009328	ncl	58	70.096	Latimeria_chalumnae
ENSDARG00000002710	ncl	80	71.474	ENSLOCG00000004828	ncl	57	69.104	Lepisosteus_oculatus
ENSDARG00000002710	ncl	83	76.547	ENSMAMG00000002086	ncl	51	73.821	Mastacembelus_armatus
ENSDARG00000002710	ncl	88	41.292	ENSMAMG00000003479	-	68	40.957	Mastacembelus_armatus
ENSDARG00000002710	ncl	79	73.139	ENSMZEG00005017438	ncl	60	72.813	Maylandia_zebra
ENSDARG00000002710	ncl	98	58.923	ENSMGAG00000008147	-	85	59.239	Meleagris_gallopavo
ENSDARG00000002710	ncl	82	76.415	ENSMMOG00000008553	ncl	84	76.721	Mola_mola
ENSDARG00000002710	ncl	88	60.125	ENSMODG00000002470	-	54	60.062	Monodelphis_domestica
ENSDARG00000002710	ncl	83	69.085	ENSMALG00000014827	ncl	62	69.267	Monopterus_albus
ENSDARG00000002710	ncl	69	42.435	ENSMPUG00000001663	-	57	42.857	Mustela_putorius_furo
ENSDARG00000002710	ncl	73	72.085	ENSNBRG00000000146	-	85	72.318	Neolamprologus_brichardi
ENSDARG00000002710	ncl	73	72.085	ENSNBRG00000001232	ncl	81	72.792	Neolamprologus_brichardi
ENSDARG00000002710	ncl	80	61.613	ENSMEUG00000012335	-	54	60.897	Notamacropus_eugenii
ENSDARG00000002710	ncl	79	73.139	ENSONIG00000012508	ncl	59	72.877	Oreochromis_niloticus
ENSDARG00000002710	ncl	80	37.261	ENSONIG00000010631	-	97	38.400	Oreochromis_niloticus
ENSDARG00000002710	ncl	82	62.918	ENSOANG00000008732	-	72	59.591	Ornithorhynchus_anatinus
ENSDARG00000002710	ncl	82	76.699	ENSORLG00000007055	ncl	70	74.408	Oryzias_latipes
ENSDARG00000002710	ncl	85	40.173	ENSORLG00000004645	-	80	39.247	Oryzias_latipes
ENSDARG00000002710	ncl	87	39.831	ENSORLG00020003497	-	72	39.516	Oryzias_latipes_hni
ENSDARG00000002710	ncl	82	76.699	ENSORLG00020017943	ncl	67	74.171	Oryzias_latipes_hni
ENSDARG00000002710	ncl	85	40.751	ENSORLG00015006613	-	75	39.785	Oryzias_latipes_hsok
ENSDARG00000002710	ncl	81	75.796	ENSORLG00015013815	ncl	87	77.049	Oryzias_latipes_hsok
ENSDARG00000002710	ncl	83	76.206	ENSOMEG00000020786	ncl	67	74.292	Oryzias_melastigma
ENSDARG00000002710	ncl	83	37.500	ENSOMEG00000015864	-	80	38.441	Oryzias_melastigma
ENSDARG00000002710	ncl	83	78.387	ENSPKIG00000002604	ncl	59	75.179	Paramormyrops_kingsleyae
ENSDARG00000002710	ncl	81	64.151	ENSPSIG00000002361	-	54	64.038	Pelodiscus_sinensis
ENSDARG00000002710	ncl	81	74.603	ENSPMGG00000004709	ncl	82	75.490	Periophthalmus_magnuspinnatus
ENSDARG00000002710	ncl	83	48.014	ENSPMAG00000003855	ncl	58	40.136	Petromyzon_marinus
ENSDARG00000002710	ncl	80	60.252	ENSPCIG00000003293	-	53	59.248	Phascolarctos_cinereus
ENSDARG00000002710	ncl	79	74.757	ENSPFOG00000024205	ncl	57	73.522	Poecilia_formosa
ENSDARG00000002710	ncl	79	74.757	ENSPLAG00000024026	ncl	57	73.460	Poecilia_latipinna
ENSDARG00000002710	ncl	79	74.757	ENSPMEG00000006000	ncl	57	74.171	Poecilia_mexicana
ENSDARG00000002710	ncl	83	72.923	ENSPNYG00000020494	ncl	60	72.813	Pundamilia_nyererei
ENSDARG00000002710	ncl	82	56.731	ENSSHAG00000002702	-	59	55.497	Sarcophilus_harrisii
ENSDARG00000002710	ncl	83	77.707	ENSSFOG00015008583	ncl	57	78.387	Scleropages_formosus
ENSDARG00000002710	ncl	88	42.857	ENSSFOG00015013153	-	78	44.300	Scleropages_formosus
ENSDARG00000002710	ncl	83	74.841	ENSSMAG00000021241	ncl	60	73.474	Scophthalmus_maximus
ENSDARG00000002710	ncl	83	43.620	ENSSMAG00000007582	-	61	43.603	Scophthalmus_maximus
ENSDARG00000002710	ncl	85	44.092	ENSSDUG00000010922	-	69	43.617	Seriola_dumerili
ENSDARG00000002710	ncl	83	78.176	ENSSDUG00000006128	ncl	84	77.850	Seriola_dumerili
ENSDARG00000002710	ncl	85	43.478	ENSSLDG00000015784	-	63	43.280	Seriola_lalandi_dorsalis
ENSDARG00000002710	ncl	83	76.849	ENSSLDG00000002012	ncl	60	76.485	Seriola_lalandi_dorsalis
ENSDARG00000002710	ncl	98	61.772	ENSSPUG00000008244	-	59	61.165	Sphenodon_punctatus
ENSDARG00000002710	ncl	73	75.618	ENSSPAG00000002637	ncl	81	75.265	Stegastes_partitus
ENSDARG00000002710	ncl	89	42.493	ENSSPAG00000001859	-	62	42.448	Stegastes_partitus
ENSDARG00000002710	ncl	80	62.145	ENSTGUG00000009782	-	60	59.896	Taeniopygia_guttata
ENSDARG00000002710	ncl	83	76.052	ENSTRUG00000008185	ncl	55	76.052	Takifugu_rubripes
ENSDARG00000002710	ncl	83	74.919	ENSTNIG00000012186	ncl	69	70.142	Tetraodon_nigroviridis
ENSDARG00000002710	ncl	80	64.650	ENSXETG00000009517	ncl	54	64.042	Xenopus_tropicalis
ENSDARG00000002710	ncl	84	39.763	ENSXCOG00000007369	-	92	40.470	Xiphophorus_couchianus
ENSDARG00000002710	ncl	79	59.740	ENSXCOG00000003524	ncl	88	60.533	Xiphophorus_couchianus
ENSDARG00000002710	ncl	83	78.275	ENSXMAG00000005914	ncl	58	75.644	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001947	heart looping	24077883.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006364	rRNA processing	24077883.	IMP	Process
GO:0009303	rRNA transcription	24077883.	IMP	Process
GO:0071014	post-mRNA release spliceosomal complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:2000815	regulation of mRNA stability involved in response to oxidative stress	21873635.	IBA	Process