EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000002968 (Gene tree)
Gene ID: 562916
Gene Symbol: a1cf
Alias: acf
Full Name: apobec1 complementation factor
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 17449 bases
Position: chr12:6160446-6177894
Accession: ZDB-GENE-060824-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000126835	DND1_DSRM	PF14709.7	2.9e-26	1	1
ENSDARP00000157454	DND1_DSRM	PF14709.7	2.9e-26	1	1
ENSDARP00000126835	RRM_1	PF00076.22	9.2e-41	1	3
ENSDARP00000126835	RRM_1	PF00076.22	9.2e-41	2	3
ENSDARP00000126835	RRM_1	PF00076.22	9.2e-41	3	3
ENSDARP00000157454	RRM_1	PF00076.22	9.2e-41	1	3
ENSDARP00000157454	RRM_1	PF00076.22	9.2e-41	2	3
ENSDARP00000157454	RRM_1	PF00076.22	9.2e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000152292	-	2584	XM_009306436	ENSDARP00000126835	586 (aa)	XP_009304711	R4GEC2
ENSDART00000185434	-	1761	-	ENSDARP00000157454	586 (aa)	-	R4GEC2

Gene Model

Click here to download ENSDARG00000002968's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000002968's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000002968	a1cf	79	61.516	ENSDARG00000079452	rbm46	78	68.707
ENSDARG00000002968	a1cf	90	50.805	ENSDARG00000061985	rbm47	90	51.418
ENSDARG00000002968	a1cf	57	50.000	ENSDARG00000026723	syncripl	88	58.642

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000002968	a1cf	100	80.405	ENSG00000148584	A1CF	100	87.562	Homo_sapiens
ENSDARG00000002968	a1cf	100	79.899	ENSAPOG00000008259	a1cf	100	79.730	Acanthochromis_polyacanthus
ENSDARG00000002968	a1cf	100	79.431	ENSAMEG00000000523	A1CF	100	78.094	Ailuropoda_melanoleuca
ENSDARG00000002968	a1cf	100	82.975	ENSACIG00000008632	a1cf	100	83.306	Amphilophus_citrinellus
ENSDARG00000002968	a1cf	100	80.905	ENSAOCG00000023744	a1cf	94	88.462	Amphiprion_ocellaris
ENSDARG00000002968	a1cf	100	79.669	ENSAPEG00000009537	a1cf	100	80.992	Amphiprion_percula
ENSDARG00000002968	a1cf	100	82.060	ENSATEG00000013720	a1cf	100	82.392	Anabas_testudineus
ENSDARG00000002968	a1cf	100	81.271	ENSAPLG00000002964	A1CF	100	79.766	Anas_platyrhynchos
ENSDARG00000002968	a1cf	100	78.268	ENSACAG00000015269	A1CF	100	78.475	Anolis_carolinensis
ENSDARG00000002968	a1cf	100	80.574	ENSANAG00000019974	A1CF	100	79.223	Aotus_nancymaae
ENSDARG00000002968	a1cf	100	81.072	ENSACLG00000017428	a1cf	100	82.245	Astatotilapia_calliptera
ENSDARG00000002968	a1cf	100	82.013	ENSAMXG00000018180	a1cf	100	82.013	Astyanax_mexicanus
ENSDARG00000002968	a1cf	100	80.438	ENSBTAG00000021195	A1CF	100	79.258	Bos_taurus
ENSDARG00000002968	a1cf	100	79.667	ENSCJAG00000005045	A1CF	100	78.333	Callithrix_jacchus
ENSDARG00000002968	a1cf	100	78.595	ENSCAFG00000015581	A1CF	100	77.090	Canis_familiaris
ENSDARG00000002968	a1cf	100	78.595	ENSCAFG00020026421	A1CF	98	79.933	Canis_lupus_dingo
ENSDARG00000002968	a1cf	100	79.201	ENSCHIG00000020411	A1CF	100	78.037	Capra_hircus
ENSDARG00000002968	a1cf	94	81.508	ENSTSYG00000001755	A1CF	100	80.072	Carlito_syrichta
ENSDARG00000002968	a1cf	100	75.926	ENSCAPG00000017386	A1CF	100	58.615	Cavia_aperea
ENSDARG00000002968	a1cf	100	79.333	ENSCPOG00000009807	A1CF	100	78.000	Cavia_porcellus
ENSDARG00000002968	a1cf	100	79.633	ENSCCAG00000018168	A1CF	100	78.297	Cebus_capucinus
ENSDARG00000002968	a1cf	100	80.339	ENSCATG00000043715	A1CF	100	78.983	Cercocebus_atys
ENSDARG00000002968	a1cf	100	78.369	ENSCLAG00000010424	A1CF	100	76.872	Chinchilla_lanigera
ENSDARG00000002968	a1cf	100	79.599	ENSCSAG00000007032	A1CF	100	78.261	Chlorocebus_sabaeus
ENSDARG00000002968	a1cf	99	76.678	ENSCHOG00000009089	A1CF	99	75.336	Choloepus_hoffmanni
ENSDARG00000002968	a1cf	100	79.766	ENSCPBG00000026464	A1CF	100	78.428	Chrysemys_picta_bellii
ENSDARG00000002968	a1cf	100	79.431	ENSCANG00000038032	A1CF	100	78.094	Colobus_angolensis_palliatus
ENSDARG00000002968	a1cf	100	78.536	ENSCGRG00001017413	A1cf	100	77.537	Cricetulus_griseus_chok1gshd
ENSDARG00000002968	a1cf	100	78.203	ENSCGRG00000017332	A1cf	100	77.371	Cricetulus_griseus_crigri
ENSDARG00000002968	a1cf	100	78.383	ENSCSEG00000002361	a1cf	100	78.878	Cynoglossus_semilaevis
ENSDARG00000002968	a1cf	100	81.229	ENSCVAG00000010520	a1cf	100	82.558	Cyprinodon_variegatus
ENSDARG00000002968	a1cf	100	78.203	ENSDNOG00000002829	A1CF	100	76.872	Dasypus_novemcinctus
ENSDARG00000002968	a1cf	82	85.145	ENSETEG00000012527	A1CF	81	85.145	Echinops_telfairi
ENSDARG00000002968	a1cf	100	79.104	ENSEASG00005012924	A1CF	100	77.944	Equus_asinus_asinus
ENSDARG00000002968	a1cf	100	78.773	ENSECAG00000010424	A1CF	100	77.612	Equus_caballus
ENSDARG00000002968	a1cf	79	71.552	ENSEEUG00000000013	A1CF	97	70.312	Erinaceus_europaeus
ENSDARG00000002968	a1cf	100	85.284	ENSELUG00000003159	a1cf	100	85.284	Esox_lucius
ENSDARG00000002968	a1cf	100	80.000	ENSFCAG00000011179	A1CF	100	78.644	Felis_catus
ENSDARG00000002968	a1cf	100	81.864	ENSFALG00000013183	A1CF	100	80.169	Ficedula_albicollis
ENSDARG00000002968	a1cf	100	79.427	ENSFDAG00000019371	A1CF	100	78.078	Fukomys_damarensis
ENSDARG00000002968	a1cf	100	75.415	ENSFHEG00000019652	a1cf	96	85.938	Fundulus_heteroclitus
ENSDARG00000002968	a1cf	100	75.748	ENSGMOG00000018943	a1cf	100	74.917	Gadus_morhua
ENSDARG00000002968	a1cf	96	79.443	ENSGALG00000003765	A1CF	98	77.875	Gallus_gallus
ENSDARG00000002968	a1cf	100	76.744	ENSGAFG00000014868	a1cf	100	76.744	Gambusia_affinis
ENSDARG00000002968	a1cf	100	77.632	ENSGACG00000010241	a1cf	100	78.454	Gasterosteus_aculeatus
ENSDARG00000002968	a1cf	95	79.262	ENSGAGG00000016508	A1CF	97	77.856	Gopherus_agassizii
ENSDARG00000002968	a1cf	100	79.333	ENSGGOG00000009670	A1CF	100	77.833	Gorilla_gorilla
ENSDARG00000002968	a1cf	100	81.818	ENSHBUG00000021959	a1cf	100	82.645	Haplochromis_burtoni
ENSDARG00000002968	a1cf	100	78.869	ENSHGLG00000008955	A1CF	100	77.704	Heterocephalus_glaber_female
ENSDARG00000002968	a1cf	100	78.203	ENSHGLG00100000518	A1CF	100	77.038	Heterocephalus_glaber_male
ENSDARG00000002968	a1cf	93	74.472	ENSHCOG00000017669	a1cf	100	73.899	Hippocampus_comes
ENSDARG00000002968	a1cf	90	89.963	ENSIPUG00000010367	a1cf	95	90.432	Ictalurus_punctatus
ENSDARG00000002968	a1cf	100	79.512	ENSKMAG00000006568	a1cf	100	80.976	Kryptolebias_marmoratus
ENSDARG00000002968	a1cf	99	80.687	ENSLBEG00000020994	a1cf	98	81.219	Labrus_bergylta
ENSDARG00000002968	a1cf	100	84.812	ENSLACG00000008061	A1CF	100	83.447	Latimeria_chalumnae
ENSDARG00000002968	a1cf	100	84.615	ENSLOCG00000006302	a1cf	100	83.779	Lepisosteus_oculatus
ENSDARG00000002968	a1cf	100	79.368	ENSLAFG00000015462	A1CF	100	78.869	Loxodonta_africana
ENSDARG00000002968	a1cf	100	80.678	ENSMFAG00000035948	A1CF	100	79.322	Macaca_fascicularis
ENSDARG00000002968	a1cf	100	80.678	ENSMMUG00000007077	A1CF	100	79.322	Macaca_mulatta
ENSDARG00000002968	a1cf	100	80.339	ENSMNEG00000031454	A1CF	100	78.983	Macaca_nemestrina
ENSDARG00000002968	a1cf	100	79.264	ENSMLEG00000037223	A1CF	100	77.926	Mandrillus_leucophaeus
ENSDARG00000002968	a1cf	100	80.763	ENSMAMG00000010402	a1cf	100	81.758	Mastacembelus_armatus
ENSDARG00000002968	a1cf	100	81.605	ENSMZEG00005013245	a1cf	100	81.032	Maylandia_zebra
ENSDARG00000002968	a1cf	100	79.633	ENSMGAG00000001507	A1CF	100	78.130	Meleagris_gallopavo
ENSDARG00000002968	a1cf	100	78.203	ENSMAUG00000007422	A1cf	100	77.205	Mesocricetus_auratus
ENSDARG00000002968	a1cf	100	79.362	ENSMICG00000003377	A1CF	100	78.859	Microcebus_murinus
ENSDARG00000002968	a1cf	100	79.368	ENSMOCG00000021536	A1cf	100	78.037	Microtus_ochrogaster
ENSDARG00000002968	a1cf	100	73.045	ENSMMOG00000009422	a1cf	100	73.833	Mola_mola
ENSDARG00000002968	a1cf	92	80.996	ENSMODG00000016478	A1CF	97	82.319	Monodelphis_domestica
ENSDARG00000002968	a1cf	100	78.268	ENSMALG00000012992	a1cf	100	77.589	Monopterus_albus
ENSDARG00000002968	a1cf	100	79.258	MGP_CAROLIEiJ_G0022873	A1cf	100	77.740	Mus_caroli
ENSDARG00000002968	a1cf	100	79.258	ENSMUSG00000052595	A1cf	99	81.271	Mus_musculus
ENSDARG00000002968	a1cf	100	79.089	MGP_PahariEiJ_G0014366	A1cf	100	77.234	Mus_pahari
ENSDARG00000002968	a1cf	100	79.357	MGP_SPRETEiJ_G0023792	A1cf	100	77.834	Mus_spretus
ENSDARG00000002968	a1cf	100	74.080	ENSMPUG00000016971	A1CF	100	72.742	Mustela_putorius_furo
ENSDARG00000002968	a1cf	100	78.203	ENSMLUG00000016071	A1CF	100	77.870	Myotis_lucifugus
ENSDARG00000002968	a1cf	100	79.867	ENSNGAG00000015136	A1cf	100	78.369	Nannospalax_galili
ENSDARG00000002968	a1cf	100	81.818	ENSNBRG00000001712	a1cf	100	82.645	Neolamprologus_brichardi
ENSDARG00000002968	a1cf	100	79.534	ENSNLEG00000012028	A1CF	100	78.037	Nomascus_leucogenys
ENSDARG00000002968	a1cf	94	80.969	ENSMEUG00000015909	A1CF	100	79.713	Notamacropus_eugenii
ENSDARG00000002968	a1cf	89	70.943	ENSOPRG00000010667	A1CF	97	70.037	Ochotona_princeps
ENSDARG00000002968	a1cf	100	82.149	ENSONIG00000019105	a1cf	100	82.645	Oreochromis_niloticus
ENSDARG00000002968	a1cf	79	81.681	ENSOANG00000007360	A1CF	99	81.466	Ornithorhynchus_anatinus
ENSDARG00000002968	a1cf	100	79.966	ENSOCUG00000011587	A1CF	100	78.788	Oryctolagus_cuniculus
ENSDARG00000002968	a1cf	100	77.851	ENSORLG00000013342	a1cf	100	77.521	Oryzias_latipes
ENSDARG00000002968	a1cf	100	78.887	ENSORLG00020000586	a1cf	100	78.887	Oryzias_latipes_hni
ENSDARG00000002968	a1cf	100	78.887	ENSORLG00015018569	a1cf	100	78.887	Oryzias_latipes_hsok
ENSDARG00000002968	a1cf	100	80.431	ENSOMEG00000013531	a1cf	100	79.934	Oryzias_melastigma
ENSDARG00000002968	a1cf	100	78.595	ENSOGAG00000012884	A1CF	100	77.926	Otolemur_garnettii
ENSDARG00000002968	a1cf	100	79.201	ENSOARG00000013695	A1CF	100	78.037	Ovis_aries
ENSDARG00000002968	a1cf	97	78.179	ENSPPAG00000028115	A1CF	99	80.962	Pan_paniscus
ENSDARG00000002968	a1cf	100	79.097	ENSPPRG00000012180	A1CF	100	77.759	Panthera_pardus
ENSDARG00000002968	a1cf	100	79.097	ENSPTIG00000021223	A1CF	100	77.759	Panthera_tigris_altaica
ENSDARG00000002968	a1cf	100	80.574	ENSPTRG00000002508	A1CF	100	79.054	Pan_troglodytes
ENSDARG00000002968	a1cf	100	80.678	ENSPANG00000021988	A1CF	100	79.322	Papio_anubis
ENSDARG00000002968	a1cf	100	87.291	ENSPKIG00000025176	a1cf	100	86.622	Paramormyrops_kingsleyae
ENSDARG00000002968	a1cf	100	80.678	ENSPSIG00000010318	A1CF	100	79.153	Pelodiscus_sinensis
ENSDARG00000002968	a1cf	98	71.993	ENSPMGG00000013359	a1cf	99	70.598	Periophthalmus_magnuspinnatus
ENSDARG00000002968	a1cf	100	78.869	ENSPEMG00000015021	A1cf	100	77.205	Peromyscus_maniculatus_bairdii
ENSDARG00000002968	a1cf	100	80.508	ENSPCIG00000002175	A1CF	100	79.831	Phascolarctos_cinereus
ENSDARG00000002968	a1cf	100	80.456	ENSPFOG00000007437	-	100	81.759	Poecilia_formosa
ENSDARG00000002968	a1cf	100	80.456	ENSPFOG00000006683	a1cf	100	81.759	Poecilia_formosa
ENSDARG00000002968	a1cf	100	81.518	ENSPLAG00000001210	-	100	82.838	Poecilia_latipinna
ENSDARG00000002968	a1cf	100	81.518	ENSPLAG00000000026	a1cf	100	82.838	Poecilia_latipinna
ENSDARG00000002968	a1cf	100	72.386	ENSPMEG00000015529	-	100	73.693	Poecilia_mexicana
ENSDARG00000002968	a1cf	100	73.344	ENSPMEG00000000921	a1cf	100	74.669	Poecilia_mexicana
ENSDARG00000002968	a1cf	100	80.293	ENSPREG00000016298	a1cf	100	81.922	Poecilia_reticulata
ENSDARG00000002968	a1cf	100	80.776	ENSPPYG00000002819	A1CF	100	79.258	Pongo_abelii
ENSDARG00000002968	a1cf	79	63.404	ENSPCAG00000006463	A1CF	79	63.191	Procavia_capensis
ENSDARG00000002968	a1cf	100	78.405	ENSPCOG00000024172	A1CF	100	77.741	Propithecus_coquereli
ENSDARG00000002968	a1cf	100	80.914	ENSPNYG00000017944	a1cf	100	81.729	Pundamilia_nyererei
ENSDARG00000002968	a1cf	100	90.101	ENSPNAG00000007704	a1cf	100	90.101	Pygocentrus_nattereri
ENSDARG00000002968	a1cf	100	79.595	ENSRNOG00000033195	A1cf	100	78.078	Rattus_norvegicus
ENSDARG00000002968	a1cf	100	74.000	ENSRBIG00000042892	A1CF	100	77.866	Rhinopithecus_bieti
ENSDARG00000002968	a1cf	100	79.599	ENSRROG00000041398	A1CF	99	79.533	Rhinopithecus_roxellana
ENSDARG00000002968	a1cf	100	79.967	ENSSBOG00000021930	A1CF	100	79.290	Saimiri_boliviensis_boliviensis
ENSDARG00000002968	a1cf	100	80.508	ENSSHAG00000005096	A1CF	100	79.322	Sarcophilus_harrisii
ENSDARG00000002968	a1cf	100	88.926	ENSSFOG00015011774	a1cf	100	89.597	Scleropages_formosus
ENSDARG00000002968	a1cf	100	78.990	ENSSMAG00000013271	a1cf	100	79.316	Scophthalmus_maximus
ENSDARG00000002968	a1cf	100	81.095	ENSSDUG00000013930	a1cf	100	80.763	Seriola_dumerili
ENSDARG00000002968	a1cf	100	76.254	ENSSLDG00000004290	a1cf	100	76.421	Seriola_lalandi_dorsalis
ENSDARG00000002968	a1cf	95	71.758	ENSSARG00000005940	A1CF	95	71.758	Sorex_araneus
ENSDARG00000002968	a1cf	95	79.329	ENSSPUG00000006797	A1CF	95	77.408	Sphenodon_punctatus
ENSDARG00000002968	a1cf	100	79.867	ENSSSCG00000010431	A1CF	100	78.536	Sus_scrofa
ENSDARG00000002968	a1cf	100	80.100	ENSTGUG00000005090	A1CF	100	78.773	Taeniopygia_guttata
ENSDARG00000002968	a1cf	100	78.827	ENSTRUG00000001982	a1cf	100	78.827	Takifugu_rubripes
ENSDARG00000002968	a1cf	100	77.922	ENSTNIG00000003580	a1cf	100	77.922	Tetraodon_nigroviridis
ENSDARG00000002968	a1cf	97	74.957	ENSTTRG00000013190	A1CF	95	73.739	Tursiops_truncatus
ENSDARG00000002968	a1cf	100	80.847	ENSUAMG00000020065	A1CF	100	79.492	Ursus_americanus
ENSDARG00000002968	a1cf	100	79.264	ENSUMAG00000011162	A1CF	100	77.926	Ursus_maritimus
ENSDARG00000002968	a1cf	87	77.115	ENSVPAG00000006130	A1CF	86	75.577	Vicugna_pacos
ENSDARG00000002968	a1cf	100	79.831	ENSVVUG00000002504	A1CF	100	78.305	Vulpes_vulpes
ENSDARG00000002968	a1cf	100	74.080	ENSXETG00000006611	a1cf	100	74.080	Xenopus_tropicalis
ENSDARG00000002968	a1cf	100	83.056	ENSXCOG00000003302	a1cf	100	83.223	Xiphophorus_couchianus
ENSDARG00000002968	a1cf	100	81.967	ENSXMAG00000016703	a1cf	100	82.131	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003727	single-stranded RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0010609	mRNA localization resulting in posttranscriptional regulation of gene expression	21873635.	IBA	Process
GO:0016554	cytidine to uridine editing	21873635.	IBA	Process
GO:0016556	mRNA modification	21873635.	IBA	Process
GO:0016556	mRNA modification	-	IEA	Process
GO:0030895	apolipoprotein B mRNA editing enzyme complex	21873635.	IBA	Component
GO:0030895	apolipoprotein B mRNA editing enzyme complex	-	IEA	Component