EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000003217 (Gene tree)
Gene ID: 570267
Gene Symbol: urb2
Alias: fc13e02|si:dkey-162b3.2|wu:fc13e02
Full Name: URB2 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 32356 bases
Position: chr13:24231327-24263682
Accession: ZDB-GENE-030131-2621
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000123082	Urb2	PF10441.9	5.5e-22	1	1
ENSDARP00000121235	Urb2	PF10441.9	1.6e-20	1	1
ENSDARP00000144441	Urb2	PF10441.9	1.7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000146524	-	996	-	ENSDARP00000123082	326 (aa)	-	B0V0U6
ENSDART00000138747	-	5161	XM_005156878	ENSDARP00000121235	1495 (aa)	XP_005156935	B0V0U5
ENSDART00000176800	-	8950	-	ENSDARP00000144441	1565 (aa)	-	A0A286YB81

Gene Model

Click here to download ENSDARG00000003217's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000003217's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000003217	urb2	99	61.165	ENSG00000135763	URB2	100	60.920	Homo_sapiens
ENSDARG00000003217	urb2	71	63.913	ENSAPOG00000000608	urb2	94	43.885	Acanthochromis_polyacanthus
ENSDARG00000003217	urb2	98	56.522	ENSAMEG00000009206	URB2	100	36.828	Ailuropoda_melanoleuca
ENSDARG00000003217	urb2	100	63.497	ENSACIG00000008078	-	100	68.932	Amphilophus_citrinellus
ENSDARG00000003217	urb2	100	72.115	ENSAOCG00000019961	urb2	100	43.978	Amphiprion_ocellaris
ENSDARG00000003217	urb2	100	72.115	ENSAPEG00000005263	urb2	100	44.038	Amphiprion_percula
ENSDARG00000003217	urb2	100	70.192	ENSATEG00000020930	urb2	100	42.916	Anabas_testudineus
ENSDARG00000003217	urb2	87	57.014	ENSAPLG00000002998	URB2	99	38.083	Anas_platyrhynchos
ENSDARG00000003217	urb2	99	66.019	ENSACAG00000001285	URB2	99	40.393	Anolis_carolinensis
ENSDARG00000003217	urb2	99	54.854	ENSANAG00000033963	URB2	99	36.761	Aotus_nancymaae
ENSDARG00000003217	urb2	69	63.556	ENSACLG00000009254	urb2	94	43.058	Astatotilapia_calliptera
ENSDARG00000003217	urb2	99	64.530	ENSAMXG00000003474	urb2	99	57.677	Astyanax_mexicanus
ENSDARG00000003217	urb2	100	55.738	ENSBTAG00000010180	URB2	100	36.656	Bos_taurus
ENSDARG00000003217	urb2	99	61.165	ENSCJAG00000010968	URB2	99	58.741	Callithrix_jacchus
ENSDARG00000003217	urb2	99	52.913	ENSCAFG00000012118	URB2	99	36.628	Canis_familiaris
ENSDARG00000003217	urb2	93	35.420	ENSCAFG00020027217	URB2	99	35.197	Canis_lupus_dingo
ENSDARG00000003217	urb2	100	55.738	ENSCHIG00000014513	URB2	100	36.604	Capra_hircus
ENSDARG00000003217	urb2	95	61.165	ENSTSYG00000006924	URB2	100	37.209	Carlito_syrichta
ENSDARG00000003217	urb2	99	61.468	ENSCPOG00000020777	-	93	46.970	Cavia_porcellus
ENSDARG00000003217	urb2	99	61.165	ENSCCAG00000023932	URB2	99	37.042	Cebus_capucinus
ENSDARG00000003217	urb2	99	61.165	ENSCATG00000043366	URB2	99	36.761	Cercocebus_atys
ENSDARG00000003217	urb2	99	52.336	ENSCLAG00000006268	URB2	99	37.331	Chinchilla_lanigera
ENSDARG00000003217	urb2	99	61.165	ENSCSAG00000010599	URB2	99	36.639	Chlorocebus_sabaeus
ENSDARG00000003217	urb2	87	52.459	ENSCHOG00000010163	URB2	64	50.000	Choloepus_hoffmanni
ENSDARG00000003217	urb2	99	67.961	ENSCPBG00000006191	URB2	99	40.687	Chrysemys_picta_bellii
ENSDARG00000003217	urb2	99	61.165	ENSCANG00000023711	URB2	99	36.329	Colobus_angolensis_palliatus
ENSDARG00000003217	urb2	99	60.194	ENSCGRG00001009591	Urb2	99	37.104	Cricetulus_griseus_chok1gshd
ENSDARG00000003217	urb2	99	60.194	ENSCGRG00000011259	Urb2	99	37.104	Cricetulus_griseus_crigri
ENSDARG00000003217	urb2	100	58.667	ENSCSEG00000000299	urb2	100	39.976	Cynoglossus_semilaevis
ENSDARG00000003217	urb2	100	60.000	ENSCVAG00000011011	urb2	100	42.495	Cyprinodon_variegatus
ENSDARG00000003217	urb2	83	50.476	ENSDNOG00000043064	URB2	99	33.823	Dasypus_novemcinctus
ENSDARG00000003217	urb2	95	57.282	ENSDORG00000014975	Urb2	99	36.264	Dipodomys_ordii
ENSDARG00000003217	urb2	95	38.194	ENSETEG00000002869	URB2	95	38.194	Echinops_telfairi
ENSDARG00000003217	urb2	95	61.165	ENSEASG00005012060	URB2	100	37.967	Equus_asinus_asinus
ENSDARG00000003217	urb2	98	61.165	ENSECAG00000012338	URB2	99	59.310	Equus_caballus
ENSDARG00000003217	urb2	91	55.944	ENSEEUG00000002669	URB2	91	55.944	Erinaceus_europaeus
ENSDARG00000003217	urb2	100	75.111	ENSELUG00000014647	urb2	100	56.957	Esox_lucius
ENSDARG00000003217	urb2	94	61.165	ENSFCAG00000007662	URB2	99	36.917	Felis_catus
ENSDARG00000003217	urb2	94	60.194	ENSFALG00000003385	URB2	99	38.422	Ficedula_albicollis
ENSDARG00000003217	urb2	99	51.869	ENSFDAG00000021079	URB2	99	37.299	Fukomys_damarensis
ENSDARG00000003217	urb2	100	61.333	ENSFHEG00000010357	urb2	100	42.523	Fundulus_heteroclitus
ENSDARG00000003217	urb2	99	71.154	ENSGMOG00000012459	urb2	100	44.223	Gadus_morhua
ENSDARG00000003217	urb2	99	66.019	ENSGALG00000011101	URB2	99	38.921	Gallus_gallus
ENSDARG00000003217	urb2	100	71.154	ENSGACG00000016179	urb2	100	45.327	Gasterosteus_aculeatus
ENSDARG00000003217	urb2	99	67.961	ENSGAGG00000021879	URB2	99	40.785	Gopherus_agassizii
ENSDARG00000003217	urb2	99	48.472	ENSGGOG00000025643	URB2	99	36.849	Gorilla_gorilla
ENSDARG00000003217	urb2	100	68.932	ENSHBUG00000018469	urb2	100	42.806	Haplochromis_burtoni
ENSDARG00000003217	urb2	87	51.869	ENSHGLG00000016561	URB2	99	36.122	Heterocephalus_glaber_female
ENSDARG00000003217	urb2	99	51.869	ENSHGLG00100001838	URB2	99	36.464	Heterocephalus_glaber_male
ENSDARG00000003217	urb2	100	64.110	ENSHCOG00000013583	-	100	67.961	Hippocampus_comes
ENSDARG00000003217	urb2	100	70.667	ENSIPUG00000020315	urb2	100	58.388	Ictalurus_punctatus
ENSDARG00000003217	urb2	96	60.194	ENSSTOG00000025323	URB2	99	37.346	Ictidomys_tridecemlineatus
ENSDARG00000003217	urb2	95	62.136	ENSJJAG00000011998	Urb2	99	36.839	Jaculus_jaculus
ENSDARG00000003217	urb2	100	68.868	ENSKMAG00000020129	urb2	100	42.146	Kryptolebias_marmoratus
ENSDARG00000003217	urb2	100	68.405	ENSLBEG00000003249	-	100	73.786	Labrus_bergylta
ENSDARG00000003217	urb2	98	66.019	ENSLACG00000002038	URB2	99	41.613	Latimeria_chalumnae
ENSDARG00000003217	urb2	99	64.126	ENSLOCG00000015462	urb2	99	48.640	Lepisosteus_oculatus
ENSDARG00000003217	urb2	99	48.908	ENSLAFG00000012484	URB2	100	35.964	Loxodonta_africana
ENSDARG00000003217	urb2	99	61.165	ENSMFAG00000039905	URB2	99	36.440	Macaca_fascicularis
ENSDARG00000003217	urb2	99	61.165	ENSMMUG00000009509	URB2	99	36.568	Macaca_mulatta
ENSDARG00000003217	urb2	99	61.165	ENSMNEG00000038762	URB2	99	36.697	Macaca_nemestrina
ENSDARG00000003217	urb2	99	61.165	ENSMLEG00000043252	URB2	99	36.632	Mandrillus_leucophaeus
ENSDARG00000003217	urb2	100	68.269	ENSMAMG00000020365	urb2	100	42.496	Mastacembelus_armatus
ENSDARG00000003217	urb2	100	68.932	ENSMZEG00005011027	urb2	100	42.728	Maylandia_zebra
ENSDARG00000003217	urb2	94	36.203	ENSMGAG00000012073	URB2	99	36.235	Meleagris_gallopavo
ENSDARG00000003217	urb2	96	56.643	ENSMAUG00000017980	Urb2	99	56.643	Mesocricetus_auratus
ENSDARG00000003217	urb2	94	61.165	ENSMICG00000033302	URB2	100	36.985	Microcebus_murinus
ENSDARG00000003217	urb2	99	60.194	ENSMOCG00000020369	Urb2	99	37.016	Microtus_ochrogaster
ENSDARG00000003217	urb2	100	67.485	ENSMMOG00000001301	-	100	73.786	Mola_mola
ENSDARG00000003217	urb2	99	57.538	ENSMODG00000009076	-	97	62.500	Monodelphis_domestica
ENSDARG00000003217	urb2	98	70.213	ENSMALG00000006529	urb2	100	43.129	Monopterus_albus
ENSDARG00000003217	urb2	97	57.143	ENSMUSG00000031976	Urb2	99	37.307	Mus_musculus
ENSDARG00000003217	urb2	94	58.252	ENSMPUG00000012438	URB2	99	36.982	Mustela_putorius_furo
ENSDARG00000003217	urb2	100	52.454	ENSMLUG00000006236	-	95	59.615	Myotis_lucifugus
ENSDARG00000003217	urb2	96	60.194	ENSNGAG00000016524	Urb2	99	36.822	Nannospalax_galili
ENSDARG00000003217	urb2	99	61.165	ENSNLEG00000014450	URB2	99	36.889	Nomascus_leucogenys
ENSDARG00000003217	urb2	87	50.820	ENSMEUG00000016434	URB2	91	41.629	Notamacropus_eugenii
ENSDARG00000003217	urb2	76	76.190	ENSOPRG00000009906	URB2	92	36.919	Ochotona_princeps
ENSDARG00000003217	urb2	99	52.336	ENSODEG00000005593	URB2	99	36.900	Octodon_degus
ENSDARG00000003217	urb2	99	70.000	ENSONIG00000017078	urb2	100	45.390	Oreochromis_niloticus
ENSDARG00000003217	urb2	99	58.252	ENSOANG00000013732	URB2	100	35.186	Ornithorhynchus_anatinus
ENSDARG00000003217	urb2	100	53.623	ENSOCUG00000010700	URB2	100	37.229	Oryctolagus_cuniculus
ENSDARG00000003217	urb2	100	67.308	ENSORLG00000010915	urb2	100	43.197	Oryzias_latipes
ENSDARG00000003217	urb2	100	67.308	ENSORLG00020003361	urb2	100	43.075	Oryzias_latipes_hni
ENSDARG00000003217	urb2	100	67.308	ENSORLG00015001534	urb2	100	43.050	Oryzias_latipes_hsok
ENSDARG00000003217	urb2	100	67.308	ENSOMEG00000010076	urb2	100	42.725	Oryzias_melastigma
ENSDARG00000003217	urb2	98	59.223	ENSOGAG00000003021	URB2	100	35.935	Otolemur_garnettii
ENSDARG00000003217	urb2	100	55.738	ENSOARG00000003102	URB2	100	36.757	Ovis_aries
ENSDARG00000003217	urb2	99	60.194	ENSPPAG00000040629	URB2	99	36.761	Pan_paniscus
ENSDARG00000003217	urb2	94	60.194	ENSPPRG00000012767	URB2	99	36.658	Panthera_pardus
ENSDARG00000003217	urb2	94	61.165	ENSPTIG00000012577	URB2	100	51.515	Panthera_tigris_altaica
ENSDARG00000003217	urb2	99	60.194	ENSPTRG00000002092	URB2	99	36.889	Pan_troglodytes
ENSDARG00000003217	urb2	99	61.165	ENSPANG00000002245	URB2	99	35.915	Papio_anubis
ENSDARG00000003217	urb2	99	74.757	ENSPKIG00000005787	urb2	99	51.365	Paramormyrops_kingsleyae
ENSDARG00000003217	urb2	99	61.475	ENSPSIG00000002690	URB2	99	40.701	Pelodiscus_sinensis
ENSDARG00000003217	urb2	100	67.485	ENSPMGG00000002006	-	100	71.845	Periophthalmus_magnuspinnatus
ENSDARG00000003217	urb2	76	59.223	ENSPEMG00000019551	Urb2	100	35.868	Peromyscus_maniculatus_bairdii
ENSDARG00000003217	urb2	99	61.165	ENSPCIG00000030071	URB2	99	37.784	Phascolarctos_cinereus
ENSDARG00000003217	urb2	99	67.000	ENSPFOG00000014330	urb2	100	43.702	Poecilia_formosa
ENSDARG00000003217	urb2	99	65.000	ENSPLAG00000014654	urb2	100	42.955	Poecilia_latipinna
ENSDARG00000003217	urb2	100	65.385	ENSPMEG00000012356	urb2	100	42.920	Poecilia_mexicana
ENSDARG00000003217	urb2	99	65.000	ENSPREG00000010268	urb2	100	42.419	Poecilia_reticulata
ENSDARG00000003217	urb2	95	61.165	ENSPPYG00000000123	URB2	100	36.842	Pongo_abelii
ENSDARG00000003217	urb2	94	61.165	ENSPCOG00000023537	URB2	100	36.761	Propithecus_coquereli
ENSDARG00000003217	urb2	94	59.804	ENSPVAG00000002108	URB2	100	34.561	Pteropus_vampyrus
ENSDARG00000003217	urb2	69	63.556	ENSPNYG00000016840	urb2	94	43.128	Pundamilia_nyererei
ENSDARG00000003217	urb2	99	74.554	ENSPNAG00000013684	urb2	99	60.592	Pygocentrus_nattereri
ENSDARG00000003217	urb2	99	59.223	ENSRNOG00000026853	Urb2	97	37.032	Rattus_norvegicus
ENSDARG00000003217	urb2	99	61.165	ENSRBIG00000037937	URB2	99	36.428	Rhinopithecus_bieti
ENSDARG00000003217	urb2	99	61.165	ENSRROG00000039854	URB2	99	36.592	Rhinopithecus_roxellana
ENSDARG00000003217	urb2	99	61.165	ENSSBOG00000023055	URB2	99	36.977	Saimiri_boliviensis_boliviensis
ENSDARG00000003217	urb2	99	55.263	ENSSHAG00000014735	URB2	99	37.944	Sarcophilus_harrisii
ENSDARG00000003217	urb2	87	70.968	ENSSFOG00015015432	urb2	98	50.635	Scleropages_formosus
ENSDARG00000003217	urb2	69	64.444	ENSSMAG00000004984	urb2	95	43.490	Scophthalmus_maximus
ENSDARG00000003217	urb2	100	62.609	ENSSDUG00000000902	urb2	100	43.608	Seriola_dumerili
ENSDARG00000003217	urb2	99	66.990	ENSSPUG00000018549	URB2	99	40.558	Sphenodon_punctatus
ENSDARG00000003217	urb2	100	69.811	ENSSPAG00000013632	urb2	100	43.614	Stegastes_partitus
ENSDARG00000003217	urb2	98	55.963	ENSSSCG00000010186	URB2	100	36.982	Sus_scrofa
ENSDARG00000003217	urb2	99	57.407	ENSTGUG00000009990	URB2	99	39.145	Taeniopygia_guttata
ENSDARG00000003217	urb2	100	70.297	ENSTRUG00000008173	urb2	100	41.551	Takifugu_rubripes
ENSDARG00000003217	urb2	100	67.890	ENSTNIG00000017689	urb2	100	44.097	Tetraodon_nigroviridis
ENSDARG00000003217	urb2	81	76.190	ENSTTRG00000014864	URB2	100	34.958	Tursiops_truncatus
ENSDARG00000003217	urb2	98	56.522	ENSUAMG00000015022	URB2	100	36.593	Ursus_americanus
ENSDARG00000003217	urb2	95	58.252	ENSUMAG00000004728	URB2	100	36.528	Ursus_maritimus
ENSDARG00000003217	urb2	76	61.165	ENSVPAG00000001750	-	51	59.028	Vicugna_pacos
ENSDARG00000003217	urb2	99	52.913	ENSVVUG00000006747	URB2	99	36.896	Vulpes_vulpes
ENSDARG00000003217	urb2	99	53.394	ENSXETG00000023331	urb2	99	36.088	Xenopus_tropicalis
ENSDARG00000003217	urb2	100	62.500	ENSXCOG00000012170	-	97	67.647	Xiphophorus_couchianus
ENSDARG00000003217	urb2	99	68.000	ENSXMAG00000015059	urb2	100	42.392	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0042254	ribosome biogenesis	21873635.	IBA	Process