EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000003257 (Gene tree)
Gene ID: 492776
Gene Symbol: zgc:101559
Alias: -
Full Name: zgc:101559
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 4988 bases
Position: chr9:17429170-17434157
Accession: ZDB-GENE-041114-122
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000005530	MMR_HSR1	PF01926.23	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000006256	-	3200	-	ENSDARP00000005530	233 (aa)	-	A8WHV0

Gene Model

Click here to download ENSDARG00000003257's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000003257's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000003257	zgc:101559	51	30.579	ENSDARG00000078686	arl8a	61	30.579
ENSDARG00000003257	zgc:101559	78	37.766	ENSDARG00000055291	rab18a	91	37.766
ENSDARG00000003257	zgc:101559	84	38.579	ENSDARG00000018602	rab5aa	89	38.579
ENSDARG00000003257	zgc:101559	84	39.394	ENSDARG00000026484	rab15	91	39.394
ENSDARG00000003257	zgc:101559	52	47.107	ENSDARG00000045628	rab34a	50	47.107
ENSDARG00000003257	zgc:101559	73	35.503	ENSDARG00000098497	hrasa	93	35.912
ENSDARG00000003257	zgc:101559	76	31.638	ENSDARG00000062865	mras	86	30.864
ENSDARG00000003257	zgc:101559	76	45.506	ENSDARG00000029663	rab1ab	84	45.506
ENSDARG00000003257	zgc:101559	78	40.884	ENSDARG00000041878	rab11ba	82	40.588
ENSDARG00000003257	zgc:101559	74	35.393	ENSDARG00000114797	rab3b	81	35.393
ENSDARG00000003257	zgc:101559	76	32.961	ENSDARG00000004151	rab23	76	33.508
ENSDARG00000003257	zgc:101559	81	39.267	ENSDARG00000089428	rab12	83	38.614
ENSDARG00000003257	zgc:101559	86	59.406	ENSDARG00000057394	rab33a	86	59.406
ENSDARG00000003257	zgc:101559	87	31.731	ENSDARG00000034522	rab6ba	97	31.731
ENSDARG00000003257	zgc:101559	84	38.693	ENSDARG00000034771	rab13	95	38.693
ENSDARG00000003257	zgc:101559	66	33.766	ENSDARG00000075285	si:ch73-116o1.2	73	33.766
ENSDARG00000003257	zgc:101559	85	37.500	ENSDARG00000087243	zgc:100918	94	37.500
ENSDARG00000003257	zgc:101559	73	31.953	ENSDARG00000010844	kras	97	33.333
ENSDARG00000003257	zgc:101559	74	41.040	ENSDARG00000090086	rab11bb	78	41.040
ENSDARG00000003257	zgc:101559	70	39.881	ENSDARG00000020497	rab7a	79	39.881
ENSDARG00000003257	zgc:101559	63	42.568	ENSDARG00000034215	rab42a	69	42.568
ENSDARG00000003257	zgc:101559	64	37.333	ENSDARG00000102580	CU571310.1	70	37.333
ENSDARG00000003257	zgc:101559	79	31.553	ENSDARG00000046013	rasl11a	78	31.553
ENSDARG00000003257	zgc:101559	78	65.263	ENSDARG00000052290	rab33ba	86	61.033
ENSDARG00000003257	zgc:101559	76	44.382	ENSDARG00000056479	rab1bb	84	44.382
ENSDARG00000003257	zgc:101559	76	31.148	ENSDARG00000015611	rasl11b	74	31.148
ENSDARG00000003257	zgc:101559	63	41.497	ENSDARG00000098344	rab18b	71	41.497
ENSDARG00000003257	zgc:101559	84	37.313	ENSDARG00000007257	rab5ab	89	37.313
ENSDARG00000003257	zgc:101559	84	38.235	ENSDARG00000052954	rab25b	94	38.235
ENSDARG00000003257	zgc:101559	78	37.569	ENSDARG00000014340	rab11al	81	37.569
ENSDARG00000003257	zgc:101559	67	42.949	ENSDARG00000020261	rab2a	73	42.949
ENSDARG00000003257	zgc:101559	80	45.161	ENSDARG00000102078	CABZ01072548.1	94	45.161
ENSDARG00000003257	zgc:101559	72	38.922	ENSDARG00000074246	rab14	75	38.922
ENSDARG00000003257	zgc:101559	72	39.881	ENSDARG00000015807	rab22a	83	39.881
ENSDARG00000003257	zgc:101559	70	33.735	ENSDARG00000063321	rabl2	73	33.735
ENSDARG00000003257	zgc:101559	58	40.441	ENSDARG00000018107	rab3da	80	40.441
ENSDARG00000003257	zgc:101559	84	42.857	ENSDARG00000058425	rab35b	96	42.857
ENSDARG00000003257	zgc:101559	76	46.023	ENSDARG00000052263	rab1aa	83	46.023
ENSDARG00000003257	zgc:101559	65	39.103	ENSDARG00000045027	rab9a	77	39.103
ENSDARG00000003257	zgc:101559	51	31.405	ENSDARG00000006915	arl8ba	61	31.405
ENSDARG00000003257	zgc:101559	72	34.524	ENSDARG00000005651	hrasb	98	36.806
ENSDARG00000003257	zgc:101559	63	37.838	ENSDARG00000100379	si:dkey-34d22.2	79	37.838
ENSDARG00000003257	zgc:101559	65	39.744	ENSDARG00000103391	rab9b	76	39.744
ENSDARG00000003257	zgc:101559	66	40.523	ENSDARG00000029885	rab41	72	40.523
ENSDARG00000003257	zgc:101559	70	32.716	ENSDARG00000038225	nras	89	33.333
ENSDARG00000003257	zgc:101559	70	46.341	ENSDARG00000103934	megf8	92	46.341
ENSDARG00000003257	zgc:101559	74	36.571	ENSDARG00000014058	rab36	65	36.571
ENSDARG00000003257	zgc:101559	68	34.810	ENSDARG00000013161	zgc:55558	88	35.294
ENSDARG00000003257	zgc:101559	76	35.955	ENSDARG00000031343	rab6bb	83	35.955
ENSDARG00000003257	zgc:101559	78	45.304	ENSDARG00000037967	si:dkey-16l2.16	86	52.427
ENSDARG00000003257	zgc:101559	63	35.333	ENSDARG00000070916	dnajc27	55	35.333
ENSDARG00000003257	zgc:101559	76	43.258	ENSDARG00000033056	zgc:171927	80	43.258
ENSDARG00000003257	zgc:101559	70	41.071	ENSDARG00000021287	rab7b	80	41.071
ENSDARG00000003257	zgc:101559	87	36.232	ENSDARG00000041450	rab11a	93	36.232
ENSDARG00000003257	zgc:101559	87	35.577	ENSDARG00000103714	rab6a	97	35.577
ENSDARG00000003257	zgc:101559	88	35.814	ENSDARG00000026098	si:dkey-13a21.4	99	35.814
ENSDARG00000003257	zgc:101559	69	42.236	ENSDARG00000058800	rab25a	74	42.236
ENSDARG00000003257	zgc:101559	64	48.993	ENSDARG00000036501	rab39bb	69	48.993
ENSDARG00000003257	zgc:101559	64	49.664	ENSDARG00000019312	rab39ba	69	49.664
ENSDARG00000003257	zgc:101559	72	48.503	ENSDARG00000037884	rab30	81	48.503
ENSDARG00000003257	zgc:101559	76	45.455	ENSDARG00000058044	rab1ba	84	45.294
ENSDARG00000003257	zgc:101559	72	39.521	ENSDARG00000035188	rab14l	75	39.521

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000003257	zgc:101559	100	73.617	ENSAPOG00000007503	zgc:101559	100	73.617	Acanthochromis_polyacanthus
ENSDARG00000003257	zgc:101559	87	81.373	ENSACIG00000021459	zgc:101559	89	81.373	Amphilophus_citrinellus
ENSDARG00000003257	zgc:101559	100	73.617	ENSAOCG00000024675	zgc:101559	100	73.617	Amphiprion_ocellaris
ENSDARG00000003257	zgc:101559	100	73.617	ENSAPEG00000005176	zgc:101559	100	73.617	Amphiprion_percula
ENSDARG00000003257	zgc:101559	100	73.191	ENSATEG00000007761	zgc:101559	100	73.191	Anabas_testudineus
ENSDARG00000003257	zgc:101559	100	76.068	ENSACLG00000027006	zgc:101559	99	76.068	Astatotilapia_calliptera
ENSDARG00000003257	zgc:101559	100	78.970	ENSAMXG00000040460	zgc:101559	94	78.970	Astyanax_mexicanus
ENSDARG00000003257	zgc:101559	100	73.617	ENSCSEG00000006243	zgc:101559	100	73.617	Cynoglossus_semilaevis
ENSDARG00000003257	zgc:101559	100	73.617	ENSCVAG00000019227	zgc:101559	100	73.617	Cyprinodon_variegatus
ENSDARG00000003257	zgc:101559	100	72.766	ENSFHEG00000011483	zgc:101559	100	72.766	Fundulus_heteroclitus
ENSDARG00000003257	zgc:101559	91	78.873	ENSGMOG00000011665	zgc:101559	100	78.873	Gadus_morhua
ENSDARG00000003257	zgc:101559	100	72.340	ENSGAFG00000021202	zgc:101559	100	72.340	Gambusia_affinis
ENSDARG00000003257	zgc:101559	94	73.182	ENSGACG00000001725	zgc:101559	94	73.182	Gasterosteus_aculeatus
ENSDARG00000003257	zgc:101559	100	76.596	ENSHBUG00000007827	zgc:101559	100	76.596	Haplochromis_burtoni
ENSDARG00000003257	zgc:101559	100	69.915	ENSHCOG00000009133	zgc:101559	100	69.915	Hippocampus_comes
ENSDARG00000003257	zgc:101559	100	76.395	ENSIPUG00000022394	zgc:101559	100	76.395	Ictalurus_punctatus
ENSDARG00000003257	zgc:101559	90	79.048	ENSKMAG00000002862	zgc:101559	89	79.048	Kryptolebias_marmoratus
ENSDARG00000003257	zgc:101559	100	75.745	ENSLBEG00000025798	zgc:101559	100	75.745	Labrus_bergylta
ENSDARG00000003257	zgc:101559	88	66.990	ENSLACG00000011557	zgc:101559	89	66.990	Latimeria_chalumnae
ENSDARG00000003257	zgc:101559	88	79.612	ENSLOCG00000005904	zgc:101559	88	79.612	Lepisosteus_oculatus
ENSDARG00000003257	zgc:101559	100	74.043	ENSMAMG00000017431	zgc:101559	100	74.043	Mastacembelus_armatus
ENSDARG00000003257	zgc:101559	100	76.596	ENSMZEG00005021778	zgc:101559	100	76.596	Maylandia_zebra
ENSDARG00000003257	zgc:101559	100	72.650	ENSMMOG00000019779	zgc:101559	100	72.650	Mola_mola
ENSDARG00000003257	zgc:101559	100	70.638	ENSMALG00000003712	zgc:101559	100	70.638	Monopterus_albus
ENSDARG00000003257	zgc:101559	100	76.596	ENSNBRG00000002684	zgc:101559	100	76.596	Neolamprologus_brichardi
ENSDARG00000003257	zgc:101559	100	76.596	ENSONIG00000006715	-	100	76.596	Oreochromis_niloticus
ENSDARG00000003257	zgc:101559	100	71.795	ENSORLG00000030642	zgc:101559	100	71.795	Oryzias_latipes
ENSDARG00000003257	zgc:101559	100	71.795	ENSORLG00020012685	zgc:101559	100	71.795	Oryzias_latipes_hni
ENSDARG00000003257	zgc:101559	100	71.368	ENSORLG00015016047	zgc:101559	100	71.368	Oryzias_latipes_hsok
ENSDARG00000003257	zgc:101559	100	73.077	ENSOMEG00000013128	zgc:101559	100	73.077	Oryzias_melastigma
ENSDARG00000003257	zgc:101559	100	69.658	ENSPKIG00000013397	zgc:101559	99	69.658	Paramormyrops_kingsleyae
ENSDARG00000003257	zgc:101559	100	73.617	ENSPFOG00000009101	-	100	73.617	Poecilia_formosa
ENSDARG00000003257	zgc:101559	100	74.043	ENSPLAG00000020627	zgc:101559	100	74.043	Poecilia_latipinna
ENSDARG00000003257	zgc:101559	100	74.043	ENSPMEG00000010152	zgc:101559	100	74.043	Poecilia_mexicana
ENSDARG00000003257	zgc:101559	100	73.617	ENSPREG00000007017	zgc:101559	100	73.617	Poecilia_reticulata
ENSDARG00000003257	zgc:101559	100	76.596	ENSPNYG00000012922	zgc:101559	100	76.596	Pundamilia_nyererei
ENSDARG00000003257	zgc:101559	100	81.974	ENSPNAG00000017856	zgc:101559	100	81.974	Pygocentrus_nattereri
ENSDARG00000003257	zgc:101559	97	73.568	ENSSFOG00015006175	zgc:101559	97	73.568	Scleropages_formosus
ENSDARG00000003257	zgc:101559	100	71.368	ENSSMAG00000002229	zgc:101559	99	71.368	Scophthalmus_maximus
ENSDARG00000003257	zgc:101559	100	75.319	ENSSDUG00000008151	zgc:101559	100	75.319	Seriola_dumerili
ENSDARG00000003257	zgc:101559	100	74.894	ENSSLDG00000019214	zgc:101559	100	74.894	Seriola_lalandi_dorsalis
ENSDARG00000003257	zgc:101559	100	74.468	ENSSPAG00000006404	zgc:101559	100	74.468	Stegastes_partitus
ENSDARG00000003257	zgc:101559	100	72.650	ENSTRUG00000009903	zgc:101559	100	72.650	Takifugu_rubripes
ENSDARG00000003257	zgc:101559	92	75.349	ENSTNIG00000015000	zgc:101559	97	71.930	Tetraodon_nigroviridis
ENSDARG00000003257	zgc:101559	100	73.191	ENSXCOG00000018683	zgc:101559	100	73.191	Xiphophorus_couchianus
ENSDARG00000003257	zgc:101559	100	73.191	ENSXMAG00000011171	zgc:101559	100	73.191	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000139	Golgi membrane	21873635.	IBA	Component
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005789	endoplasmic reticulum membrane	21873635.	IBA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process