EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000003429 (Gene tree)
Gene ID
406701
Gene Symbol
hnrnpdl
Alias
hnrpdl|wu:fa11d08|zgc:66169
Full Name
heterogeneous nuclear ribonucleoprotein D-like
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Minus strand
Length
7305 bases
Position
chr10:5017216-5024520
Accession
ZDB-GENE-040426-2717
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000005968RRM_1PF00076.228.6e-3412
ENSDARP00000005968RRM_1PF00076.228.6e-3422
ENSDARP00000152490RRM_1PF00076.228.6e-3412
ENSDARP00000152490RRM_1PF00076.228.6e-3422
ENSDARP00000120368RRM_1PF00076.220.0001511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000020631-1449XM_021479148ENSDARP00000005968296 (aa)XP_021334823Q7SXN2
ENSDART00000189017-1343XM_005155542ENSDARP00000152490296 (aa)XP_005155599Q7SXN2
ENSDART00000146539-428--- (aa)--
ENSDART00000132284-537--- (aa)--
ENSDART00000148277-789-ENSDARP00000120368157 (aa)-F1QC42
ENSDART00000137853-889--- (aa)--
Gene Model
Click here to download ENSDARG00000003429's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000003429's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000003429hnrnpdl5937.179ENSDARG00000070846dazap110037.179
ENSDARG00000003429hnrnpdl6135.366ENSDARG00000004452tardbpl5335.366
ENSDARG00000003429hnrnpdl7368.056ENSDARG00000099865hnrnpabb9059.075
ENSDARG00000003429hnrnpdl9434.694ENSDARG00000032614msi2b9666.667
ENSDARG00000003429hnrnpdl7464.035ENSDARG00000007960hnrnpaba8656.711
ENSDARG00000003429hnrnpdl5930.392ENSDARG00000032175puf60a6430.928
ENSDARG00000003429hnrnpdl8137.349ENSDARG00000010710msi15246.753
ENSDARG00000003429hnrnpdl9563.830ENSDARG00000059246hnrnpd9260.135
ENSDARG00000003429hnrnpdl5535.882ENSDARG00000036161hnrnpa0l5635.882
ENSDARG00000003429hnrnpdl5242.667ENSDARG00000036162hnrnpa0b8637.918
ENSDARG00000003429hnrnpdl5237.333ENSDARG00000031809rbm24b6137.333
ENSDARG00000003429hnrnpdl6040.000ENSDARG00000059351hnrnpa37740.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000003429hnrnpdl10074.026ENSG00000152795HNRNPDL9773.379Homo_sapiens
ENSDARG00000003429hnrnpdl9775.839ENSAMEG00000005145-7873.720Ailuropoda_melanoleuca
ENSDARG00000003429hnrnpdl9662.543ENSAMEG00000007660-9659.298Ailuropoda_melanoleuca
ENSDARG00000003429hnrnpdl9476.515ENSAPLG00000011774HNRNPDL9972.243Anas_platyrhynchos
ENSDARG00000003429hnrnpdl9676.632ENSACAG00000010416HNRNPDL9276.552Anolis_carolinensis
ENSDARG00000003429hnrnpdl9974.754ENSANAG00000029054HNRNPDL7372.696Aotus_nancymaae
ENSDARG00000003429hnrnpdl9456.855ENSANAG00000035255-9956.680Aotus_nancymaae
ENSDARG00000003429hnrnpdl9968.456ENSANAG00000035355-9766.319Aotus_nancymaae
ENSDARG00000003429hnrnpdl9770.847ENSANAG00000038001-9767.687Aotus_nancymaae
ENSDARG00000003429hnrnpdl9968.197ENSANAG00000030316-8365.278Aotus_nancymaae
ENSDARG00000003429hnrnpdl10079.333ENSAMXG00000001495hnrnpdl10078.000Astyanax_mexicanus
ENSDARG00000003429hnrnpdl9974.754ENSBTAG00000014804HNRNPDL7072.696Bos_taurus
ENSDARG00000003429hnrnpdl6882.090ENSCJAG00000045227-6884.293Callithrix_jacchus
ENSDARG00000003429hnrnpdl9974.754ENSCJAG00000015197-7372.696Callithrix_jacchus
ENSDARG00000003429hnrnpdl9567.128ENSCAFG00000000776-9962.718Canis_familiaris
ENSDARG00000003429hnrnpdl9974.754ENSCAFG00000008940HNRNPDL7072.696Canis_familiaris
ENSDARG00000003429hnrnpdl9974.754ENSCAFG00020010699-7072.696Canis_lupus_dingo
ENSDARG00000003429hnrnpdl9974.754ENSCHIG00000010260-7072.696Capra_hircus
ENSDARG00000003429hnrnpdl9593.548ENSCHIG00000026667-6957.823Capra_hircus
ENSDARG00000003429hnrnpdl9562.500ENSTSYG00000036907-9960.702Carlito_syrichta
ENSDARG00000003429hnrnpdl9964.375ENSTSYG00000026714-8861.350Carlito_syrichta
ENSDARG00000003429hnrnpdl9475.812ENSTSYG00000031074-10073.162Carlito_syrichta
ENSDARG00000003429hnrnpdl8961.679ENSCAPG00000015955-10059.108Cavia_aperea
ENSDARG00000003429hnrnpdl9874.917ENSCPOG00000015619-7472.819Cavia_porcellus
ENSDARG00000003429hnrnpdl9974.754ENSCCAG00000020777HNRNPDL7372.696Cebus_capucinus
ENSDARG00000003429hnrnpdl5683.133ENSCCAG00000020531-7982.456Cebus_capucinus
ENSDARG00000003429hnrnpdl6783.333ENSCATG00000030349-8585.340Cercocebus_atys
ENSDARG00000003429hnrnpdl9474.643ENSCATG00000038573-7071.273Cercocebus_atys
ENSDARG00000003429hnrnpdl9960.625ENSCLAG00000010786-9958.478Chinchilla_lanigera
ENSDARG00000003429hnrnpdl9974.754ENSCLAG00000008428HNRNPDL7072.696Chinchilla_lanigera
ENSDARG00000003429hnrnpdl9974.754ENSCSAG00000004461HNRNPDL7372.696Chlorocebus_sabaeus
ENSDARG00000003429hnrnpdl9775.421ENSCHOG00000000160-9973.196Choloepus_hoffmanni
ENSDARG00000003429hnrnpdl9474.007ENSCHOG00000002938-10071.324Choloepus_hoffmanni
ENSDARG00000003429hnrnpdl9471.642ENSCHOG00000009204-10069.202Choloepus_hoffmanni
ENSDARG00000003429hnrnpdl9972.093ENSCHOG00000003275-8771.134Choloepus_hoffmanni
ENSDARG00000003429hnrnpdl9973.443ENSCHOG00000010831-8772.355Choloepus_hoffmanni
ENSDARG00000003429hnrnpdl9675.945ENSCPBG00000008014HNRNPDL9676.632Chrysemys_picta_bellii
ENSDARG00000003429hnrnpdl9475.812ENSCANG00000020228-10073.162Colobus_angolensis_palliatus
ENSDARG00000003429hnrnpdl9974.098ENSCGRG00001010960Hnrnpdl8673.897Cricetulus_griseus_chok1gshd
ENSDARG00000003429hnrnpdl9475.090ENSCGRG00000011361-10070.833Cricetulus_griseus_crigri
ENSDARG00000003429hnrnpdl9674.570ENSDNOG00000018280-9971.379Dasypus_novemcinctus
ENSDARG00000003429hnrnpdl6363.298ENSDNOG00000046422-9763.298Dasypus_novemcinctus
ENSDARG00000003429hnrnpdl9157.875ENSDNOG00000034016-9654.676Dasypus_novemcinctus
ENSDARG00000003429hnrnpdl9571.280ENSDNOG00000033760-9569.751Dasypus_novemcinctus
ENSDARG00000003429hnrnpdl7975.000ENSDNOG00000033765-9375.439Dasypus_novemcinctus
ENSDARG00000003429hnrnpdl9974.426ENSDNOG00000003887-7372.852Dasypus_novemcinctus
ENSDARG00000003429hnrnpdl9974.754ENSDORG00000000968-7171.667Dipodomys_ordii
ENSDARG00000003429hnrnpdl9773.469ENSDORG00000024157-9769.896Dipodomys_ordii
ENSDARG00000003429hnrnpdl9943.396ENSETEG00000010820-10051.092Echinops_telfairi
ENSDARG00000003429hnrnpdl9647.333ENSEASG00005012961-7459.259Equus_asinus_asinus
ENSDARG00000003429hnrnpdl9974.754ENSEASG00005016276-7072.696Equus_asinus_asinus
ENSDARG00000003429hnrnpdl9647.782ENSECAG00000040564-6160.656Equus_caballus
ENSDARG00000003429hnrnpdl9974.754ENSECAG00000022692HNRNPDL7372.696Equus_caballus
ENSDARG00000003429hnrnpdl9775.168ENSEEUG00000004301-7072.014Erinaceus_europaeus
ENSDARG00000003429hnrnpdl10079.070ENSELUG00000003241hnrnpdl10078.667Esox_lucius
ENSDARG00000003429hnrnpdl9974.754ENSFCAG00000000455HNRNPDL7372.696Felis_catus
ENSDARG00000003429hnrnpdl9676.632ENSFALG00000005709HNRNPDL9673.793Ficedula_albicollis
ENSDARG00000003429hnrnpdl9475.899ENSFDAG00000000851-9973.260Fukomys_damarensis
ENSDARG00000003429hnrnpdl9143.333ENSFDAG00000002891-5454.545Fukomys_damarensis
ENSDARG00000003429hnrnpdl9777.397ENSGALG00000023199HNRNPDL9773.540Gallus_gallus
ENSDARG00000003429hnrnpdl9676.351ENSGAGG00000003646HNRNPDL9676.976Gopherus_agassizii
ENSDARG00000003429hnrnpdl9974.754ENSGGOG00000003714HNRNPDL7372.696Gorilla_gorilla
ENSDARG00000003429hnrnpdl9073.234ENSHGLG00000013420-9069.776Heterocephalus_glaber_female
ENSDARG00000003429hnrnpdl9974.754ENSHGLG00000015791HNRNPDL6973.038Heterocephalus_glaber_female
ENSDARG00000003429hnrnpdl9964.966ENSHGLG00000014427-8782.383Heterocephalus_glaber_female
ENSDARG00000003429hnrnpdl9565.714ENSHGLG00100010072-9462.898Heterocephalus_glaber_male
ENSDARG00000003429hnrnpdl9966.242ENSHGLG00100016282-9763.763Heterocephalus_glaber_male
ENSDARG00000003429hnrnpdl9974.754ENSHGLG00100005262HNRNPDL8674.061Heterocephalus_glaber_male
ENSDARG00000003429hnrnpdl9960.479ENSHGLG00100019080-8965.480Heterocephalus_glaber_male
ENSDARG00000003429hnrnpdl9966.456ENSHGLG00100017644-9763.194Heterocephalus_glaber_male
ENSDARG00000003429hnrnpdl10078.451ENSIPUG00000024951hnrnpdl10071.947Ictalurus_punctatus
ENSDARG00000003429hnrnpdl9974.754ENSSTOG00000013979HNRNPDL7372.696Ictidomys_tridecemlineatus
ENSDARG00000003429hnrnpdl9975.415ENSJJAG00000021673Hnrnpdl7372.696Jaculus_jaculus
ENSDARG00000003429hnrnpdl7084.000ENSJJAG00000000674-7582.888Jaculus_jaculus
ENSDARG00000003429hnrnpdl6081.301ENSLACG00000003613HNRNPDL7480.469Latimeria_chalumnae
ENSDARG00000003429hnrnpdl10082.828ENSLOCG00000010736hnrnpdl10078.716Lepisosteus_oculatus
ENSDARG00000003429hnrnpdl8547.710ENSLAFG00000031444-7454.404Loxodonta_africana
ENSDARG00000003429hnrnpdl9974.754ENSLAFG00000008612HNRNPDL9173.162Loxodonta_africana
ENSDARG00000003429hnrnpdl9974.754ENSMFAG00000002275HNRNPDL7372.696Macaca_fascicularis
ENSDARG00000003429hnrnpdl9968.712ENSMMUG00000015777HNRNPDL8785.492Macaca_mulatta
ENSDARG00000003429hnrnpdl9974.754ENSMNEG00000045130HNRNPDL7372.696Macaca_nemestrina
ENSDARG00000003429hnrnpdl9774.061ENSMLEG00000014825-9770.990Mandrillus_leucophaeus
ENSDARG00000003429hnrnpdl9775.839ENSMLEG00000041600HNRNPDL9773.379Mandrillus_leucophaeus
ENSDARG00000003429hnrnpdl9477.206ENSMGAG00000008033HNRNPDL10072.694Meleagris_gallopavo
ENSDARG00000003429hnrnpdl9675.676ENSMAUG00000011132Hnrnpdl8673.897Mesocricetus_auratus
ENSDARG00000003429hnrnpdl9974.351ENSMICG00000001445-7371.333Microcebus_murinus
ENSDARG00000003429hnrnpdl7180.861ENSMICG00000037040-8883.938Microcebus_murinus
ENSDARG00000003429hnrnpdl9775.421ENSMOCG00000015928Hnrnpdl7073.038Microtus_ochrogaster
ENSDARG00000003429hnrnpdl9776.174ENSMODG00000011916-7473.038Monodelphis_domestica
ENSDARG00000003429hnrnpdl6485.106ENSMODG00000006825-7984.456Monodelphis_domestica
ENSDARG00000003429hnrnpdl9974.754ENSMUSG00000029328Hnrnpdl9173.379Mus_musculus
ENSDARG00000003429hnrnpdl9974.426MGP_PahariEiJ_G0017226Hnrnpdl9173.038Mus_pahari
ENSDARG00000003429hnrnpdl9974.754MGP_SPRETEiJ_G0028445Hnrnpdl9173.379Mus_spretus
ENSDARG00000003429hnrnpdl9852.564ENSMPUG00000011188-9956.809Mustela_putorius_furo
ENSDARG00000003429hnrnpdl9475.000ENSMPUG00000014753-9972.243Mustela_putorius_furo
ENSDARG00000003429hnrnpdl9975.828ENSMPUG00000009986-9472.054Mustela_putorius_furo
ENSDARG00000003429hnrnpdl9561.592ENSMPUG00000006259-10057.840Mustela_putorius_furo
ENSDARG00000003429hnrnpdl9557.746ENSMLUG00000025989-9355.674Myotis_lucifugus
ENSDARG00000003429hnrnpdl9776.174ENSMLUG00000014452-7373.038Myotis_lucifugus
ENSDARG00000003429hnrnpdl9642.373ENSMLUG00000030192-6552.632Myotis_lucifugus
ENSDARG00000003429hnrnpdl9676.014ENSNGAG00000015740Hnrnpdl7372.696Nannospalax_galili
ENSDARG00000003429hnrnpdl9974.754ENSNLEG00000008636HNRNPDL8586.387Nomascus_leucogenys
ENSDARG00000003429hnrnpdl9968.121ENSMEUG00000010033HNRNPDL9064.094Notamacropus_eugenii
ENSDARG00000003429hnrnpdl6983.744ENSMEUG00000011454-8086.010Notamacropus_eugenii
ENSDARG00000003429hnrnpdl9475.451ENSOPRG00000007178-10072.794Ochotona_princeps
ENSDARG00000003429hnrnpdl9372.792ENSODEG00000000376-8171.273Octodon_degus
ENSDARG00000003429hnrnpdl9973.203ENSODEG00000020231-8572.355Octodon_degus
ENSDARG00000003429hnrnpdl9971.429ENSODEG00000004187-9770.307Octodon_degus
ENSDARG00000003429hnrnpdl8375.000ENSODEG00000002106-6871.852Octodon_degus
ENSDARG00000003429hnrnpdl9769.831ENSODEG00000003135-9870.307Octodon_degus
ENSDARG00000003429hnrnpdl9475.725ENSOANG00000004651HNRNPDL10073.063Ornithorhynchus_anatinus
ENSDARG00000003429hnrnpdl7253.425ENSOCUG00000025252-8657.527Oryctolagus_cuniculus
ENSDARG00000003429hnrnpdl9973.115ENSOCUG00000013805-7370.000Oryctolagus_cuniculus
ENSDARG00000003429hnrnpdl9647.203ENSOGAG00000024995-6560.106Otolemur_garnettii
ENSDARG00000003429hnrnpdl9975.497ENSOGAG00000002501-7371.864Otolemur_garnettii
ENSDARG00000003429hnrnpdl6777.778ENSOGAG00000031703-8280.749Otolemur_garnettii
ENSDARG00000003429hnrnpdl9475.812ENSOARG00000000824-8473.529Ovis_aries
ENSDARG00000003429hnrnpdl6084.393ENSOARG00000011472-6284.659Ovis_aries
ENSDARG00000003429hnrnpdl6671.282ENSOARG00000002402-6274.074Ovis_aries
ENSDARG00000003429hnrnpdl10074.026ENSPPAG00000043177HNRNPDL7372.696Pan_paniscus
ENSDARG00000003429hnrnpdl9974.754ENSPPRG00000013787HNRNPDL7372.696Panthera_pardus
ENSDARG00000003429hnrnpdl9775.839ENSPTIG00000018505HNRNPDL9773.379Panthera_tigris_altaica
ENSDARG00000003429hnrnpdl10074.026ENSPTRG00000016217HNRNPDL7372.696Pan_troglodytes
ENSDARG00000003429hnrnpdl9974.754ENSPANG00000004761HNRNPDL7371.667Papio_anubis
ENSDARG00000003429hnrnpdl10079.599ENSPKIG00000025514hnrnpdl10076.431Paramormyrops_kingsleyae
ENSDARG00000003429hnrnpdl9676.351ENSPSIG00000016746HNRNPDL8776.976Pelodiscus_sinensis
ENSDARG00000003429hnrnpdl9475.090ENSPEMG00000016545-9273.529Peromyscus_maniculatus_bairdii
ENSDARG00000003429hnrnpdl6569.072ENSPCIG00000009814-7369.072Phascolarctos_cinereus
ENSDARG00000003429hnrnpdl9776.174ENSPCIG00000003089-7473.038Phascolarctos_cinereus
ENSDARG00000003429hnrnpdl6174.419ENSPCIG00000008965-8174.419Phascolarctos_cinereus
ENSDARG00000003429hnrnpdl9974.754ENSPPYG00000014886HNRNPDL7372.696Pongo_abelii
ENSDARG00000003429hnrnpdl9475.812ENSPCAG00000011543HNRNPDL6572.426Procavia_capensis
ENSDARG00000003429hnrnpdl9974.351ENSPCOG00000019831-7372.355Propithecus_coquereli
ENSDARG00000003429hnrnpdl9968.712ENSPVAG00000006816HNRNPDL7163.000Pteropus_vampyrus
ENSDARG00000003429hnrnpdl9383.453ENSPNAG00000016380hnrnpdl9482.182Pygocentrus_nattereri
ENSDARG00000003429hnrnpdl9974.342ENSRNOG00000002270Hnrnpdl8476.015Rattus_norvegicus
ENSDARG00000003429hnrnpdl9974.754ENSRBIG00000030310HNRNPDL7372.696Rhinopithecus_bieti
ENSDARG00000003429hnrnpdl9974.754ENSRROG00000034174HNRNPDL7372.696Rhinopithecus_roxellana
ENSDARG00000003429hnrnpdl9766.102ENSSBOG00000020566-9767.577Saimiri_boliviensis_boliviensis
ENSDARG00000003429hnrnpdl9761.745ENSSBOG00000022627-10059.727Saimiri_boliviensis_boliviensis
ENSDARG00000003429hnrnpdl9956.962ENSSBOG00000028904-9955.602Saimiri_boliviensis_boliviensis
ENSDARG00000003429hnrnpdl9776.174ENSSHAG00000013616-8274.061Sarcophilus_harrisii
ENSDARG00000003429hnrnpdl10082.667ENSSFOG00015005893hnrnpdl10077.852Scleropages_formosus
ENSDARG00000003429hnrnpdl9968.712ENSSARG00000009961-10065.462Sorex_araneus
ENSDARG00000003429hnrnpdl9674.411ENSSPUG00000013700HNRNPDL9672.603Sphenodon_punctatus
ENSDARG00000003429hnrnpdl9975.415ENSSSCG00000037245-7171.667Sus_scrofa
ENSDARG00000003429hnrnpdl9651.399ENSSSCG00000012473-6662.105Sus_scrofa
ENSDARG00000003429hnrnpdl9475.646ENSTGUG00000002850HNRNPDL10073.063Taeniopygia_guttata
ENSDARG00000003429hnrnpdl9176.449ENSTBEG00000002817-7472.101Tupaia_belangeri
ENSDARG00000003429hnrnpdl9970.492ENSTTRG00000001793-7068.942Tursiops_truncatus
ENSDARG00000003429hnrnpdl9974.754ENSUAMG00000011358HNRNPDL7072.696Ursus_americanus
ENSDARG00000003429hnrnpdl9975.415ENSUMAG00000008681HNRNPDL7073.720Ursus_maritimus
ENSDARG00000003429hnrnpdl7460.268ENSVPAG00000002422-10055.147Vicugna_pacos
ENSDARG00000003429hnrnpdl7262.500ENSVVUG00000001421-7067.153Vulpes_vulpes
ENSDARG00000003429hnrnpdl9974.751ENSVVUG00000024653HNRNPDL7072.014Vulpes_vulpes
ENSDARG00000003429hnrnpdl9773.826ENSVVUG00000013596-9771.034Vulpes_vulpes
ENSDARG00000003429hnrnpdl9775.085ENSXETG00000023026hnrnpdl9871.672Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm21873635.IBAComponent
GO:0008143poly(A) binding21873635.IBAFunction
GO:0019012virion-IEAComponent
GO:0019013viral nucleocapsid-IEAComponent
GO:0034046poly(G) binding21873635.IBAFunction
GO:0043565sequence-specific DNA binding21873635.IBAFunction
GO:1990837sequence-specific double-stranded DNA binding21873635.IBAFunction
GO:1990904ribonucleoprotein complex21873635.IBAComponent

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