EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000003841 (Gene tree)
Gene ID: 445066
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 9453 bases
Position: chr25:13677299-13686751
Accession: ZDB-GENE-040801-197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000002264	HVSL	PF09749.9	8.7e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000007029	-	1953	XM_009297898	ENSDARP00000002264	276 (aa)	XP_009296173	Q6DEF6

Gene Model

Click here to download ENSDARG00000003841's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000003841's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000003841	usb1	81	50.446	ENSG00000103005	USB1	100	50.467	Homo_sapiens
ENSDARG00000003841	usb1	100	54.643	ENSAPOG00000011942	usb1	80	62.054	Acanthochromis_polyacanthus
ENSDARG00000003841	usb1	95	46.565	ENSAMEG00000017205	USB1	89	48.536	Ailuropoda_melanoleuca
ENSDARG00000003841	usb1	85	60.338	ENSACIG00000012234	usb1	87	60.338	Amphilophus_citrinellus
ENSDARG00000003841	usb1	100	56.552	ENSAOCG00000014831	usb1	88	60.643	Amphiprion_ocellaris
ENSDARG00000003841	usb1	100	56.897	ENSAPEG00000000296	usb1	88	61.044	Amphiprion_percula
ENSDARG00000003841	usb1	96	54.887	ENSATEG00000009348	usb1	80	62.222	Anabas_testudineus
ENSDARG00000003841	usb1	81	54.425	ENSAPLG00000002756	USB1	100	54.425	Anas_platyrhynchos
ENSDARG00000003841	usb1	82	52.193	ENSACAG00000015481	USB1	99	52.193	Anolis_carolinensis
ENSDARG00000003841	usb1	81	50.000	ENSANAG00000035640	USB1	85	50.000	Aotus_nancymaae
ENSDARG00000003841	usb1	81	63.393	ENSACLG00000020586	usb1	79	63.393	Astatotilapia_calliptera
ENSDARG00000003841	usb1	99	56.803	ENSAMXG00000040146	usb1	74	67.265	Astyanax_mexicanus
ENSDARG00000003841	usb1	99	46.182	ENSBTAG00000015758	USB1	94	47.791	Bos_taurus
ENSDARG00000003841	usb1	87	48.117	ENSCJAG00000011733	USB1	90	48.117	Callithrix_jacchus
ENSDARG00000003841	usb1	99	46.350	ENSCAFG00000008556	USB1	60	51.121	Canis_familiaris
ENSDARG00000003841	usb1	99	46.350	ENSCAFG00020009263	USB1	84	51.121	Canis_lupus_dingo
ENSDARG00000003841	usb1	99	46.545	ENSCHIG00000024290	USB1	94	48.193	Capra_hircus
ENSDARG00000003841	usb1	81	50.000	ENSTSYG00000006997	USB1	85	50.000	Carlito_syrichta
ENSDARG00000003841	usb1	84	40.260	ENSCAPG00000009057	USB1	99	40.260	Cavia_aperea
ENSDARG00000003841	usb1	99	44.000	ENSCPOG00000014325	USB1	86	48.052	Cavia_porcellus
ENSDARG00000003841	usb1	81	50.446	ENSCCAG00000022132	USB1	85	50.446	Cebus_capucinus
ENSDARG00000003841	usb1	87	48.536	ENSCATG00000032174	USB1	94	46.988	Cercocebus_atys
ENSDARG00000003841	usb1	64	47.159	ENSCLAG00000007363	USB1	100	47.159	Chinchilla_lanigera
ENSDARG00000003841	usb1	81	50.446	ENSCSAG00000004783	USB1	90	48.117	Chlorocebus_sabaeus
ENSDARG00000003841	usb1	84	53.680	ENSCPBG00000026943	USB1	83	53.680	Chrysemys_picta_bellii
ENSDARG00000003841	usb1	81	33.333	ENSCING00000011490	-	90	32.794	Ciona_intestinalis
ENSDARG00000003841	usb1	80	33.913	ENSCSAVG00000000894	-	92	32.171	Ciona_savignyi
ENSDARG00000003841	usb1	81	50.446	ENSCANG00000037135	USB1	85	50.446	Colobus_angolensis_palliatus
ENSDARG00000003841	usb1	99	45.091	ENSCGRG00001011243	USB1	89	48.739	Cricetulus_griseus_chok1gshd
ENSDARG00000003841	usb1	99	45.091	ENSCGRG00000013252	USB1	89	48.739	Cricetulus_griseus_crigri
ENSDARG00000003841	usb1	100	57.401	ENSCSEG00000013881	usb1	99	57.401	Cynoglossus_semilaevis
ENSDARG00000003841	usb1	82	57.576	ENSCVAG00000009252	usb1	99	57.576	Cyprinodon_variegatus
ENSDARG00000003841	usb1	99	46.182	ENSDORG00000001888	Usb1	90	49.372	Dipodomys_ordii
ENSDARG00000003841	usb1	83	37.500	FBgn0037713	CG16790	84	37.991	Drosophila_melanogaster
ENSDARG00000003841	usb1	99	37.276	ENSETEG00000019682	USB1	90	39.331	Echinops_telfairi
ENSDARG00000003841	usb1	96	40.672	ENSEBUG00000005889	usb1	78	44.934	Eptatretus_burgeri
ENSDARG00000003841	usb1	99	46.545	ENSEASG00005005484	USB1	94	48.193	Equus_asinus_asinus
ENSDARG00000003841	usb1	99	46.715	ENSECAG00000019493	USB1	86	48.387	Equus_caballus
ENSDARG00000003841	usb1	64	44.886	ENSEEUG00000000154	USB1	65	45.665	Erinaceus_europaeus
ENSDARG00000003841	usb1	86	60.996	ENSELUG00000010974	usb1	88	60.996	Esox_lucius
ENSDARG00000003841	usb1	81	50.893	ENSFCAG00000002693	USB1	84	50.893	Felis_catus
ENSDARG00000003841	usb1	84	52.814	ENSFALG00000006876	USB1	94	49.603	Ficedula_albicollis
ENSDARG00000003841	usb1	99	44.364	ENSFDAG00000010052	USB1	84	49.107	Fukomys_damarensis
ENSDARG00000003841	usb1	88	52.610	ENSFHEG00000012334	usb1	82	56.522	Fundulus_heteroclitus
ENSDARG00000003841	usb1	81	59.641	ENSGMOG00000004228	usb1	99	59.641	Gadus_morhua
ENSDARG00000003841	usb1	81	52.232	ENSGALG00000035604	USB1	88	52.444	Gallus_gallus
ENSDARG00000003841	usb1	100	53.901	ENSGAFG00000021890	usb1	85	58.228	Gambusia_affinis
ENSDARG00000003841	usb1	98	50.185	ENSGACG00000003257	usb1	81	57.143	Gasterosteus_aculeatus
ENSDARG00000003841	usb1	99	49.818	ENSGAGG00000022572	USB1	89	50.813	Gopherus_agassizii
ENSDARG00000003841	usb1	81	51.339	ENSGGOG00000017147	USB1	90	48.954	Gorilla_gorilla
ENSDARG00000003841	usb1	87	60.905	ENSHBUG00000009823	usb1	86	60.905	Haplochromis_burtoni
ENSDARG00000003841	usb1	99	45.255	ENSHGLG00000016078	USB1	85	48.927	Heterocephalus_glaber_female
ENSDARG00000003841	usb1	99	45.255	ENSHGLG00100005562	USB1	85	48.927	Heterocephalus_glaber_male
ENSDARG00000003841	usb1	77	59.155	ENSHCOG00000015633	usb1	97	54.980	Hippocampus_comes
ENSDARG00000003841	usb1	100	60.690	ENSIPUG00000008601	usb1	80	70.259	Ictalurus_punctatus
ENSDARG00000003841	usb1	87	48.954	ENSSTOG00000007548	USB1	88	48.954	Ictidomys_tridecemlineatus
ENSDARG00000003841	usb1	99	46.182	ENSJJAG00000021859	Usb1	89	49.791	Jaculus_jaculus
ENSDARG00000003841	usb1	85	58.228	ENSKMAG00000007200	usb1	83	58.228	Kryptolebias_marmoratus
ENSDARG00000003841	usb1	95	51.493	ENSLBEG00000008452	usb1	66	56.938	Labrus_bergylta
ENSDARG00000003841	usb1	69	55.497	ENSLACG00000000105	USB1	66	55.497	Latimeria_chalumnae
ENSDARG00000003841	usb1	81	57.143	ENSLOCG00000000465	usb1	79	57.143	Lepisosteus_oculatus
ENSDARG00000003841	usb1	99	38.182	ENSLAFG00000002267	USB1	83	41.071	Loxodonta_africana
ENSDARG00000003841	usb1	87	48.117	ENSMFAG00000003926	USB1	94	46.586	Macaca_fascicularis
ENSDARG00000003841	usb1	87	48.117	ENSMMUG00000022669	USB1	94	46.586	Macaca_mulatta
ENSDARG00000003841	usb1	87	47.699	ENSMNEG00000042487	USB1	90	47.699	Macaca_nemestrina
ENSDARG00000003841	usb1	87	48.117	ENSMLEG00000028756	USB1	94	46.586	Mandrillus_leucophaeus
ENSDARG00000003841	usb1	100	56.115	ENSMAMG00000015092	usb1	99	56.115	Mastacembelus_armatus
ENSDARG00000003841	usb1	81	63.393	ENSMZEG00005010008	usb1	86	60.494	Maylandia_zebra
ENSDARG00000003841	usb1	99	47.636	ENSMAUG00000007832	Usb1	90	50.628	Mesocricetus_auratus
ENSDARG00000003841	usb1	81	51.339	ENSMICG00000004900	USB1	90	49.791	Microcebus_murinus
ENSDARG00000003841	usb1	99	46.545	ENSMOCG00000022647	Usb1	90	49.791	Microtus_ochrogaster
ENSDARG00000003841	usb1	81	61.161	ENSMMOG00000000490	usb1	87	61.161	Mola_mola
ENSDARG00000003841	usb1	79	51.584	ENSMODG00000014067	USB1	84	52.193	Monodelphis_domestica
ENSDARG00000003841	usb1	87	57.202	ENSMALG00000005930	usb1	86	57.202	Monopterus_albus
ENSDARG00000003841	usb1	99	45.455	MGP_CAROLIEiJ_G0031421	Usb1	99	47.321	Mus_caroli
ENSDARG00000003841	usb1	99	45.091	ENSMUSG00000031792	Usb1	99	47.321	Mus_musculus
ENSDARG00000003841	usb1	87	48.536	MGP_PahariEiJ_G0023019	Usb1	100	49.573	Mus_pahari
ENSDARG00000003841	usb1	99	45.091	MGP_SPRETEiJ_G0032540	Usb1	90	48.117	Mus_spretus
ENSDARG00000003841	usb1	95	46.947	ENSMPUG00000004684	USB1	85	49.372	Mustela_putorius_furo
ENSDARG00000003841	usb1	81	50.893	ENSMLUG00000007400	USB1	97	50.893	Myotis_lucifugus
ENSDARG00000003841	usb1	99	45.818	ENSNGAG00000009703	Usb1	83	50.893	Nannospalax_galili
ENSDARG00000003841	usb1	87	57.613	ENSNBRG00000008747	usb1	99	62.150	Neolamprologus_brichardi
ENSDARG00000003841	usb1	81	47.768	ENSNLEG00000003340	USB1	90	47.768	Nomascus_leucogenys
ENSDARG00000003841	usb1	99	45.487	ENSODEG00000016214	USB1	94	47.012	Octodon_degus
ENSDARG00000003841	usb1	100	56.272	ENSONIG00000011063	usb1	87	60.905	Oreochromis_niloticus
ENSDARG00000003841	usb1	82	50.442	ENSOANG00000012118	USB1	95	50.442	Ornithorhynchus_anatinus
ENSDARG00000003841	usb1	81	61.161	ENSORLG00000012479	usb1	82	61.161	Oryzias_latipes
ENSDARG00000003841	usb1	81	59.821	ENSORLG00020018671	usb1	82	59.821	Oryzias_latipes_hni
ENSDARG00000003841	usb1	81	61.161	ENSORLG00015009679	usb1	83	61.161	Oryzias_latipes_hsok
ENSDARG00000003841	usb1	81	62.054	ENSOMEG00000012930	usb1	81	62.054	Oryzias_melastigma
ENSDARG00000003841	usb1	87	46.862	ENSOGAG00000003273	USB1	89	46.862	Otolemur_garnettii
ENSDARG00000003841	usb1	89	48.988	ENSOARG00000001107	USB1	95	48.988	Ovis_aries
ENSDARG00000003841	usb1	81	50.446	ENSPPAG00000042137	USB1	90	48.117	Pan_paniscus
ENSDARG00000003841	usb1	81	50.893	ENSPPRG00000024797	USB1	84	50.893	Panthera_pardus
ENSDARG00000003841	usb1	81	50.446	ENSPTIG00000007506	USB1	84	50.446	Panthera_tigris_altaica
ENSDARG00000003841	usb1	78	50.935	ENSPTRG00000008172	USB1	100	50.935	Pan_troglodytes
ENSDARG00000003841	usb1	87	48.117	ENSPANG00000025138	USB1	94	46.586	Papio_anubis
ENSDARG00000003841	usb1	82	63.877	ENSPKIG00000015109	usb1	76	63.877	Paramormyrops_kingsleyae
ENSDARG00000003841	usb1	81	40.506	ENSPSIG00000004305	USB1	100	40.506	Pelodiscus_sinensis
ENSDARG00000003841	usb1	82	57.080	ENSPMGG00000017725	usb1	87	57.080	Periophthalmus_magnuspinnatus
ENSDARG00000003841	usb1	99	45.091	ENSPEMG00000016183	Usb1	88	48.739	Peromyscus_maniculatus_bairdii
ENSDARG00000003841	usb1	81	47.345	ENSPMAG00000000462	usb1	95	47.345	Petromyzon_marinus
ENSDARG00000003841	usb1	100	55.160	ENSPFOG00000011130	usb1	85	58.824	Poecilia_formosa
ENSDARG00000003841	usb1	100	54.804	ENSPLAG00000009820	usb1	85	58.403	Poecilia_latipinna
ENSDARG00000003841	usb1	100	55.357	ENSPMEG00000006402	usb1	85	58.824	Poecilia_mexicana
ENSDARG00000003841	usb1	88	54.183	ENSPREG00000001047	usb1	87	57.674	Poecilia_reticulata
ENSDARG00000003841	usb1	76	46.445	ENSPPYG00000007401	USB1	90	44.248	Pongo_abelii
ENSDARG00000003841	usb1	87	48.536	ENSPCOG00000022612	USB1	90	48.536	Propithecus_coquereli
ENSDARG00000003841	usb1	99	43.682	ENSPVAG00000004613	USB1	92	46.444	Pteropus_vampyrus
ENSDARG00000003841	usb1	100	57.143	ENSPNYG00000022262	usb1	86	60.905	Pundamilia_nyererei
ENSDARG00000003841	usb1	94	62.738	ENSPNAG00000011736	usb1	85	64.143	Pygocentrus_nattereri
ENSDARG00000003841	usb1	99	44.727	ENSRNOG00000013216	Usb1	90	47.699	Rattus_norvegicus
ENSDARG00000003841	usb1	78	50.467	ENSRBIG00000044466	USB1	100	50.467	Rhinopithecus_bieti
ENSDARG00000003841	usb1	81	50.446	ENSRROG00000029211	USB1	85	50.446	Rhinopithecus_roxellana
ENSDARG00000003841	usb1	81	50.893	ENSSBOG00000029362	USB1	85	50.893	Saimiri_boliviensis_boliviensis
ENSDARG00000003841	usb1	79	48.858	ENSSHAG00000006993	USB1	98	46.964	Sarcophilus_harrisii
ENSDARG00000003841	usb1	93	60.606	ENSSFOG00015023663	usb1	81	61.089	Scleropages_formosus
ENSDARG00000003841	usb1	97	50.534	ENSSMAG00000015834	usb1	80	56.723	Scophthalmus_maximus
ENSDARG00000003841	usb1	81	62.500	ENSSDUG00000002949	usb1	84	61.674	Seriola_dumerili
ENSDARG00000003841	usb1	81	62.054	ENSSLDG00000014174	usb1	80	62.054	Seriola_lalandi_dorsalis
ENSDARG00000003841	usb1	78	53.738	ENSSPUG00000006741	USB1	100	53.738	Sphenodon_punctatus
ENSDARG00000003841	usb1	100	54.225	ENSSPAG00000007484	usb1	85	59.336	Stegastes_partitus
ENSDARG00000003841	usb1	99	45.818	ENSSSCG00000002807	USB1	89	48.954	Sus_scrofa
ENSDARG00000003841	usb1	76	54.028	ENSTGUG00000004792	USB1	83	54.028	Taeniopygia_guttata
ENSDARG00000003841	usb1	100	55.396	ENSTRUG00000021069	usb1	90	58.436	Takifugu_rubripes
ENSDARG00000003841	usb1	100	49.638	ENSTNIG00000000626	usb1	92	52.033	Tetraodon_nigroviridis
ENSDARG00000003841	usb1	81	37.054	ENSTBEG00000001507	USB1	97	37.054	Tupaia_belangeri
ENSDARG00000003841	usb1	95	46.947	ENSUAMG00000016823	USB1	89	48.954	Ursus_americanus
ENSDARG00000003841	usb1	78	50.935	ENSUMAG00000021369	USB1	100	50.935	Ursus_maritimus
ENSDARG00000003841	usb1	99	45.985	ENSVVUG00000023700	USB1	90	49.580	Vulpes_vulpes
ENSDARG00000003841	usb1	79	53.670	ENSXETG00000013795	usb1	90	53.778	Xenopus_tropicalis
ENSDARG00000003841	usb1	98	54.044	ENSXMAG00000024687	usb1	70	58.824	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	21873635.	IBA	Function
GO:0000175	3'-5'-exoribonuclease activity	-	ISS	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030097	hemopoiesis	26522474.	IMP	Process
GO:0030223	neutrophil differentiation	25849198.	IGI	Process
GO:0030223	neutrophil differentiation	25849198.	IMP	Process
GO:0034477	U6 snRNA 3'-end processing	21873635.	IBA	Process
GO:0034477	U6 snRNA 3'-end processing	-	IEA	Process
GO:0043484	regulation of RNA splicing	25849198.	IMP	Process
GO:1990838	poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends	-	IEA	Function