EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000003938 (Gene tree)
Gene ID
327491
Gene Symbol
rpa1
Alias
wu:fi14b08|zgc:55337|zgc:77092
Full Name
replication protein A1
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Minus strand
Length
40651 bases
Position
chr15:26498339-26538989
Accession
ZDB-GENE-030912-3
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000029067tRNA_anti-codonPF01336.252.9e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000032880-2421-ENSDARP00000029067601 (aa)-Q6NY74
Gene Model
Click here to download ENSDARG00000003938's gene model file
Pathways
Pathway IDPathway NameSource
dre03030DNA replicationKEGG
dre03420Nucleotide excision repairKEGG
dre03430Mismatch repairKEGG
dre03440Homologous recombinationKEGG
dre03460Fanconi anemia pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000003938's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000003938rpa19966.597ENSAPOG00000019409RPA19666.597Acanthochromis_polyacanthus
ENSDARG00000003938rpa19976.667ENSAPOG00000011658rpa19976.667Acanthochromis_polyacanthus
ENSDARG00000003938rpa19864.013ENSAMEG00000007706RPA19764.013Ailuropoda_melanoleuca
ENSDARG00000003938rpa19563.714ENSACIG00000012881RPA19963.714Amphilophus_citrinellus
ENSDARG00000003938rpa19668.458ENSACIG00000007277rpa19968.458Amphilophus_citrinellus
ENSDARG00000003938rpa19959.938ENSAOCG00000009003RPA110059.630Amphiprion_ocellaris
ENSDARG00000003938rpa19976.000ENSAOCG00000023376rpa19976.000Amphiprion_ocellaris
ENSDARG00000003938rpa19975.500ENSAPEG00000008634rpa19975.500Amphiprion_percula
ENSDARG00000003938rpa19958.886ENSAPEG00000019132RPA110058.584Amphiprion_percula
ENSDARG00000003938rpa19959.418ENSATEG00000006443RPA110059.418Anabas_testudineus
ENSDARG00000003938rpa19574.042ENSATEG00000022024rpa110074.042Anabas_testudineus
ENSDARG00000003938rpa19857.357ENSAPLG00000012442RPA19857.357Anas_platyrhynchos
ENSDARG00000003938rpa19955.628ENSACAG00000014490RPA19956.178Anolis_carolinensis
ENSDARG00000003938rpa19664.587ENSANAG00000023456RPA19864.587Aotus_nancymaae
ENSDARG00000003938rpa19476.021ENSACLG00000006640rpa19976.021Astatotilapia_calliptera
ENSDARG00000003938rpa19962.128ENSACLG00000005223RPA19962.128Astatotilapia_calliptera
ENSDARG00000003938rpa110084.909ENSAMXG00000008418rpa110085.240Astyanax_mexicanus
ENSDARG00000003938rpa19963.636ENSBTAG00000009711RPA19963.636Bos_taurus
ENSDARG00000003938rpa19962.013ENSCJAG00000001848RPA19962.764Callithrix_jacchus
ENSDARG00000003938rpa19962.378ENSCAFG00000019249RPA19963.029Canis_familiaris
ENSDARG00000003938rpa19962.378ENSCAFG00020009847RPA19963.029Canis_lupus_dingo
ENSDARG00000003938rpa19963.799ENSCHIG00000026308RPA19963.961Capra_hircus
ENSDARG00000003938rpa19962.825ENSTSYG00000003482-9962.825Carlito_syrichta
ENSDARG00000003938rpa19962.825ENSCPOG00000000035RPA19962.825Cavia_porcellus
ENSDARG00000003938rpa19953.247ENSCCAG00000010981RPA19953.821Cebus_capucinus
ENSDARG00000003938rpa19959.837ENSCLAG00000015045-9959.837Chinchilla_lanigera
ENSDARG00000003938rpa19963.149ENSCLAG00000005185-10063.149Chinchilla_lanigera
ENSDARG00000003938rpa19954.058ENSCSAG00000013833RPA19954.383Chlorocebus_sabaeus
ENSDARG00000003938rpa17269.794ENSCHOG00000009454-9969.794Choloepus_hoffmanni
ENSDARG00000003938rpa19562.692ENSCHOG00000013540-9962.692Choloepus_hoffmanni
ENSDARG00000003938rpa110061.564ENSCPBG00000020377RPA19962.281Chrysemys_picta_bellii
ENSDARG00000003938rpa19943.067ENSCING00000023482-9943.067Ciona_intestinalis
ENSDARG00000003938rpa19863.007ENSCANG00000030911RPA19963.007Colobus_angolensis_palliatus
ENSDARG00000003938rpa19962.399ENSCGRG00001008197Rpa19962.399Cricetulus_griseus_chok1gshd
ENSDARG00000003938rpa18163.834ENSCGRG00000000582Rpa19963.834Cricetulus_griseus_crigri
ENSDARG00000003938rpa19955.183ENSCSEG00000012726RPA19956.701Cynoglossus_semilaevis
ENSDARG00000003938rpa19969.917ENSCSEG00000013066rpa19969.917Cynoglossus_semilaevis
ENSDARG00000003938rpa19974.050ENSCVAG00000019431rpa110073.712Cyprinodon_variegatus
ENSDARG00000003938rpa19657.342ENSCVAG00000013446-9657.430Cyprinodon_variegatus
ENSDARG00000003938rpa19864.404ENSDNOG00000017218RPA19864.404Dasypus_novemcinctus
ENSDARG00000003938rpa19963.844ENSDORG00000006199Rpa19964.007Dipodomys_ordii
ENSDARG00000003938rpa19942.079FBgn0010173RpA-709842.574Drosophila_melanogaster
ENSDARG00000003938rpa18373.196ENSETEG00000017608RPA18273.196Echinops_telfairi
ENSDARG00000003938rpa19863.833ENSEASG00005009372RPA19963.908Equus_asinus_asinus
ENSDARG00000003938rpa19963.577ENSECAG00000023886RPA19963.740Equus_caballus
ENSDARG00000003938rpa16970.167ENSEEUG00000002186-6870.167Erinaceus_europaeus
ENSDARG00000003938rpa18862.147ENSELUG00000006136RPA19962.147Esox_lucius
ENSDARG00000003938rpa19976.860ENSELUG00000021071rpa19976.860Esox_lucius
ENSDARG00000003938rpa19962.276ENSFCAG00000006306RPA19962.276Felis_catus
ENSDARG00000003938rpa19962.704ENSFALG00000006575RPA19962.704Ficedula_albicollis
ENSDARG00000003938rpa19962.764ENSFDAG00000007720RPA19962.764Fukomys_damarensis
ENSDARG00000003938rpa19973.090ENSFHEG00000003580rpa19973.090Fundulus_heteroclitus
ENSDARG00000003938rpa19971.285ENSGMOG00000010382rpa19971.285Gadus_morhua
ENSDARG00000003938rpa19961.664ENSGALG00000003072RPA19961.664Gallus_gallus
ENSDARG00000003938rpa19974.624ENSGAFG00000012916rpa19974.624Gambusia_affinis
ENSDARG00000003938rpa19959.389ENSGAFG00000020953RPA19959.237Gambusia_affinis
ENSDARG00000003938rpa19974.210ENSGACG00000010856rpa19974.210Gasterosteus_aculeatus
ENSDARG00000003938rpa110061.238ENSGAGG00000013611RPA19961.238Gopherus_agassizii
ENSDARG00000003938rpa19962.583ENSGGOG00000014186RPA19962.583Gorilla_gorilla
ENSDARG00000003938rpa19977.129ENSHBUG00000017773rpa19977.129Haplochromis_burtoni
ENSDARG00000003938rpa19657.601ENSHBUG00000009348RPA19957.601Haplochromis_burtoni
ENSDARG00000003938rpa19961.789ENSHGLG00000008846RPA110062.215Heterocephalus_glaber_female
ENSDARG00000003938rpa19958.958ENSHGLG00100000799-9958.958Heterocephalus_glaber_male
ENSDARG00000003938rpa19961.789ENSHGLG00100017755-10062.215Heterocephalus_glaber_male
ENSDARG00000003938rpa19953.181ENSHGLG00100002005-9953.443Heterocephalus_glaber_male
ENSDARG00000003938rpa19946.446ENSHCOG00000000351RPA19946.040Hippocampus_comes
ENSDARG00000003938rpa19969.394ENSHCOG00000001401rpa19969.394Hippocampus_comes
ENSDARG00000003938rpa19981.878ENSIPUG00000004400rpa19981.878Ictalurus_punctatus
ENSDARG00000003938rpa19162.281ENSSTOG00000022475RPA19562.281Ictidomys_tridecemlineatus
ENSDARG00000003938rpa19564.225ENSJJAG00000000876Rpa19864.225Jaculus_jaculus
ENSDARG00000003938rpa19961.678ENSKMAG00000000234RPA19961.678Kryptolebias_marmoratus
ENSDARG00000003938rpa19971.195ENSKMAG00000005605rpa19971.686Kryptolebias_marmoratus
ENSDARG00000003938rpa19968.271ENSLBEG00000002281RPA18668.271Labrus_bergylta
ENSDARG00000003938rpa19974.751ENSLBEG00000021604rpa19974.751Labrus_bergylta
ENSDARG00000003938rpa17961.237ENSLACG00000007210RPA19861.237Latimeria_chalumnae
ENSDARG00000003938rpa110069.687ENSLOCG00000006397rpa110069.687Lepisosteus_oculatus
ENSDARG00000003938rpa19961.935ENSLAFG00000015354RPA19961.935Loxodonta_africana
ENSDARG00000003938rpa18261.782ENSMFAG00000036138-9962.178Macaca_fascicularis
ENSDARG00000003938rpa19958.265ENSMMUG00000002442-9958.265Macaca_mulatta
ENSDARG00000003938rpa19962.993ENSMMUG00000011604-9963.350Macaca_mulatta
ENSDARG00000003938rpa19961.789ENSMNEG00000031632-9962.114Macaca_nemestrina
ENSDARG00000003938rpa19953.377ENSMNEG00000029837-9953.377Macaca_nemestrina
ENSDARG00000003938rpa19859.901ENSMLEG00000038768-9960.396Mandrillus_leucophaeus
ENSDARG00000003938rpa19971.860ENSMAMG00000020097RPA19967.223Mastacembelus_armatus
ENSDARG00000003938rpa19975.167ENSMAMG00000017993rpa19975.167Mastacembelus_armatus
ENSDARG00000003938rpa19962.128ENSMZEG00005024731RPA19962.128Maylandia_zebra
ENSDARG00000003938rpa19976.962ENSMZEG00005007551rpa19976.962Maylandia_zebra
ENSDARG00000003938rpa19960.065ENSMGAG00000005315RPA19960.065Meleagris_gallopavo
ENSDARG00000003938rpa19763.333ENSMAUG00000010474Rpa19964.000Mesocricetus_auratus
ENSDARG00000003938rpa19963.072ENSMICG00000012867RPA19963.399Microcebus_murinus
ENSDARG00000003938rpa19963.072ENSMOCG00000013019Rpa19963.072Microtus_ochrogaster
ENSDARG00000003938rpa19973.667ENSMMOG00000014292rpa19975.043Mola_mola
ENSDARG00000003938rpa19863.744ENSMMOG00000010868RPA19863.744Mola_mola
ENSDARG00000003938rpa110064.065ENSMODG00000010549RPA19964.065Monodelphis_domestica
ENSDARG00000003938rpa19976.294ENSMALG00000011453rpa19976.294Monopterus_albus
ENSDARG00000003938rpa19968.694ENSMALG00000001208RPA18868.694Monopterus_albus
ENSDARG00000003938rpa19963.149MGP_CAROLIEiJ_G0016734Rpa19963.149Mus_caroli
ENSDARG00000003938rpa19962.862ENSMUSG00000000751Rpa19962.862Mus_musculus
ENSDARG00000003938rpa19963.651MGP_PahariEiJ_G0017871Rpa19963.651Mus_pahari
ENSDARG00000003938rpa19962.921MGP_SPRETEiJ_G0017577Rpa19962.921Mus_spretus
ENSDARG00000003938rpa19962.927ENSMPUG00000013119RPA19962.927Mustela_putorius_furo
ENSDARG00000003938rpa19962.862ENSMLUG00000006113RPA19962.862Myotis_lucifugus
ENSDARG00000003938rpa19564.516ENSNGAG00000004522Rpa19464.516Nannospalax_galili
ENSDARG00000003938rpa19575.923ENSNBRG00000020595rpa19975.923Neolamprologus_brichardi
ENSDARG00000003938rpa19860.365ENSNBRG00000009672RPA19760.365Neolamprologus_brichardi
ENSDARG00000003938rpa19963.415ENSNLEG00000017149RPA19963.415Nomascus_leucogenys
ENSDARG00000003938rpa19656.588ENSMEUG00000006714RPA19856.588Notamacropus_eugenii
ENSDARG00000003938rpa19563.317ENSODEG00000009038RPA19663.317Octodon_degus
ENSDARG00000003938rpa19976.557ENSONIG00000013135rpa19976.557Oreochromis_niloticus
ENSDARG00000003938rpa19864.628ENSOANG00000010880RPA19964.628Ornithorhynchus_anatinus
ENSDARG00000003938rpa19960.681ENSOCUG00000001504RPA19960.681Oryctolagus_cuniculus
ENSDARG00000003938rpa19958.257ENSORLG00000003368RPA19958.257Oryzias_latipes
ENSDARG00000003938rpa19975.585ENSORLG00000004856rpa19975.585Oryzias_latipes
ENSDARG00000003938rpa19975.920ENSORLG00020008980rpa19975.920Oryzias_latipes_hni
ENSDARG00000003938rpa19956.907ENSORLG00020015284RPA19956.907Oryzias_latipes_hni
ENSDARG00000003938rpa19975.920ENSORLG00015013982rpa19975.920Oryzias_latipes_hsok
ENSDARG00000003938rpa16868.675ENSORLG00015005867-9568.675Oryzias_latipes_hsok
ENSDARG00000003938rpa19959.034ENSORLG00015020383RPA19959.034Oryzias_latipes_hsok
ENSDARG00000003938rpa19956.891ENSOMEG00000011040RPA19960.490Oryzias_melastigma
ENSDARG00000003938rpa19972.120ENSOMEG00000004704rpa19972.120Oryzias_melastigma
ENSDARG00000003938rpa17671.978ENSOGAG00000029379-9971.978Otolemur_garnettii
ENSDARG00000003938rpa19963.577ENSOGAG00000005581-9963.577Otolemur_garnettii
ENSDARG00000003938rpa19963.799ENSOARG00000014479RPA19963.961Ovis_aries
ENSDARG00000003938rpa19963.415ENSPPAG00000039680RPA19963.415Pan_paniscus
ENSDARG00000003938rpa19961.951ENSPPRG00000011807RPA19961.951Panthera_pardus
ENSDARG00000003938rpa19962.114ENSPTIG00000007898RPA19962.114Panthera_tigris_altaica
ENSDARG00000003938rpa19963.577ENSPTRG00000008539RPA19963.577Pan_troglodytes
ENSDARG00000003938rpa19962.987ENSPANG00000024592RPA19963.312Papio_anubis
ENSDARG00000003938rpa19972.742ENSPKIG00000008053rpa19973.641Paramormyrops_kingsleyae
ENSDARG00000003938rpa19761.889ENSPSIG00000015617RPA19861.889Pelodiscus_sinensis
ENSDARG00000003938rpa19960.526ENSPMGG00000000543RPA19962.950Periophthalmus_magnuspinnatus
ENSDARG00000003938rpa19972.074ENSPMGG00000011589rpa19972.074Periophthalmus_magnuspinnatus
ENSDARG00000003938rpa19963.132ENSPEMG00000021061Rpa19963.132Peromyscus_maniculatus_bairdii
ENSDARG00000003938rpa19963.799ENSPCIG00000019049RPA19963.740Phascolarctos_cinereus
ENSDARG00000003938rpa19974.624ENSPFOG00000003987rpa19974.624Poecilia_formosa
ENSDARG00000003938rpa19974.624ENSPLAG00000004984rpa19974.624Poecilia_latipinna
ENSDARG00000003938rpa19459.547ENSPLAG00000008844-9759.547Poecilia_latipinna
ENSDARG00000003938rpa19974.791ENSPMEG00000020602rpa19974.791Poecilia_mexicana
ENSDARG00000003938rpa19459.223ENSPMEG00000003627-9758.738Poecilia_mexicana
ENSDARG00000003938rpa19370.880ENSPREG00000010119RPA18970.880Poecilia_reticulata
ENSDARG00000003938rpa19466.316ENSPREG00000010174rpa19666.316Poecilia_reticulata
ENSDARG00000003938rpa19963.235ENSPCOG00000001799RPA19963.235Propithecus_coquereli
ENSDARG00000003938rpa19962.439ENSPVAG00000002149RPA19962.439Pteropus_vampyrus
ENSDARG00000003938rpa19977.129ENSPNYG00000016316rpa19977.129Pundamilia_nyererei
ENSDARG00000003938rpa19961.972ENSPNYG00000024165RPA19961.972Pundamilia_nyererei
ENSDARG00000003938rpa19974.286ENSPNAG00000008599rpa110072.476Pygocentrus_nattereri
ENSDARG00000003938rpa19768.932ENSRNOG00000003123Rpa19964.379Rattus_norvegicus
ENSDARG00000003938rpa19963.149ENSRBIG00000036587RPA19963.149Rhinopithecus_bieti
ENSDARG00000003938rpa19958.929ENSRROG00000043278RPA19958.929Rhinopithecus_roxellana
ENSDARG00000003938rpa19732.237YAR007CRFA19732.237Saccharomyces_cerevisiae
ENSDARG00000003938rpa19163.815ENSSBOG00000030233RPA19764.464Saimiri_boliviensis_boliviensis
ENSDARG00000003938rpa19963.115ENSSHAG00000007969RPA19863.934Sarcophilus_harrisii
ENSDARG00000003938rpa110077.741ENSSFOG00015005362rpa19277.741Scleropages_formosus
ENSDARG00000003938rpa19371.171ENSSMAG00000019746RPA110057.640Scophthalmus_maximus
ENSDARG00000003938rpa19957.185ENSSDUG00000016358RPA19569.281Seriola_dumerili
ENSDARG00000003938rpa19976.667ENSSDUG00000011949rpa19976.667Seriola_dumerili
ENSDARG00000003938rpa19976.667ENSSLDG00000011806rpa19976.667Seriola_lalandi_dorsalis
ENSDARG00000003938rpa19171.759ENSSLDG00000020784RPA19469.063Seriola_lalandi_dorsalis
ENSDARG00000003938rpa18772.727ENSSARG00000007506RPA18972.727Sorex_araneus
ENSDARG00000003938rpa19760.169ENSSPUG00000007223RPA19860.169Sphenodon_punctatus
ENSDARG00000003938rpa19976.667ENSSPAG00000009903rpa19976.667Stegastes_partitus
ENSDARG00000003938rpa19962.729ENSSPAG00000011165RPA110062.729Stegastes_partitus
ENSDARG00000003938rpa19863.682ENSSSCG00000017822RPA19963.847Sus_scrofa
ENSDARG00000003938rpa19962.193ENSTGUG00000005775RPA19962.193Taeniopygia_guttata
ENSDARG00000003938rpa19972.788ENSTRUG00000003616rpa19972.788Takifugu_rubripes
ENSDARG00000003938rpa19969.860ENSTRUG00000000405RPA18769.248Takifugu_rubripes
ENSDARG00000003938rpa110073.529ENSTNIG00000016199rpa110073.529Tetraodon_nigroviridis
ENSDARG00000003938rpa17370.455ENSTBEG00000002709RPA17470.455Tupaia_belangeri
ENSDARG00000003938rpa19962.500ENSTTRG00000001169RPA19962.500Tursiops_truncatus
ENSDARG00000003938rpa18780.000ENSUAMG00000015676RPA19680.000Ursus_americanus
ENSDARG00000003938rpa19963.355ENSUMAG00000009328RPA19963.577Ursus_maritimus
ENSDARG00000003938rpa19962.336ENSVPAG00000009443RPA19962.336Vicugna_pacos
ENSDARG00000003938rpa19962.439ENSVVUG00000021715RPA19963.089Vulpes_vulpes
ENSDARG00000003938rpa19966.722ENSXETG00000013538rpa19967.053Xenopus_tropicalis
ENSDARG00000003938rpa19473.097ENSXCOG00000010068rpa19573.097Xiphophorus_couchianus
ENSDARG00000003938rpa19562.087ENSXCOG00000009899-9962.087Xiphophorus_couchianus
ENSDARG00000003938rpa19470.429ENSXMAG00000010333RPA18370.429Xiphophorus_maculatus
ENSDARG00000003938rpa19973.579ENSXMAG00000004102rpa110074.419Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000723telomere maintenance21873635.IBAProcess
GO:0000724double-strand break repair via homologous recombination21873635.IBAProcess
GO:0000784nuclear chromosome, telomeric region21873635.IBAComponent
GO:0003676nucleic acid binding-IEAFunction
GO:0003677DNA binding-IEAFunction
GO:0003684damaged DNA binding21873635.IBAFunction
GO:0003684damaged DNA binding-ISSFunction
GO:0003697single-stranded DNA binding21873635.IBAFunction
GO:0003697single-stranded DNA binding-ISSFunction
GO:0005634nucleus-IEAComponent
GO:0005662DNA replication factor A complex21873635.IBAComponent
GO:0005662DNA replication factor A complex-ISSComponent
GO:0006260DNA replication-IEAProcess
GO:0006260DNA replication-ISSProcess
GO:0006261DNA-dependent DNA replication21873635.IBAProcess
GO:0006268DNA unwinding involved in DNA replication21873635.IBAProcess
GO:0006281DNA repair21873635.IBAProcess
GO:0006281DNA repair-IEAProcess
GO:0006289nucleotide-excision repair21873635.IBAProcess
GO:0006310DNA recombination-IEAProcess
GO:0007004telomere maintenance via telomerase21873635.IBAProcess
GO:0007507heart development19652097.IMPProcess
GO:0016605PML body-IEAComponent
GO:0034502protein localization to chromosome-ISSProcess
GO:0043047single-stranded telomeric DNA binding21873635.IBAFunction
GO:0043565sequence-specific DNA binding21873635.IBAFunction
GO:0046872metal ion binding-IEAFunction
GO:0051321meiotic cell cycle21873635.IBAProcess

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