EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000003941 (Gene tree)
Gene ID: 337399
Gene Symbol: rrs1
Alias: fj66c04|wu:fj66c04|zgc:66358
Full Name: RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 2129 bases
Position: chr24:23837519-23839647
Accession: ZDB-GENE-030131-9345
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000111034	RRS1	PF04939.12	2.2e-59	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000125190	-	2129	-	ENSDARP00000111034	346 (aa)	-	Q7SX91

Gene Model

Click here to download ENSDARG00000003941's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000003941's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000003941	rrs1	91	65.397	ENSG00000179041	RRS1	82	66.667	Homo_sapiens
ENSDARG00000003941	rrs1	91	77.848	ENSATEG00000011743	rrs1	85	79.264	Anabas_testudineus
ENSDARG00000003941	rrs1	94	65.749	ENSANAG00000018116	RRS1	82	67.667	Aotus_nancymaae
ENSDARG00000003941	rrs1	100	72.159	ENSAMXG00000037893	rrs1	78	76.333	Astyanax_mexicanus
ENSDARG00000003941	rrs1	92	64.688	ENSBTAG00000016716	RRS1	82	66.333	Bos_taurus
ENSDARG00000003941	rrs1	81	45.017	WBGene00007617	rrbs-1	85	44.674	Caenorhabditis_elegans
ENSDARG00000003941	rrs1	94	65.443	ENSCJAG00000022034	RRS1	82	67.333	Callithrix_jacchus
ENSDARG00000003941	rrs1	90	64.537	ENSCAFG00000007313	RRS1	82	66.333	Canis_familiaris
ENSDARG00000003941	rrs1	90	64.537	ENSCAFG00020016049	-	82	66.333	Canis_lupus_dingo
ENSDARG00000003941	rrs1	90	64.537	ENSCAFG00020020365	-	82	66.333	Canis_lupus_dingo
ENSDARG00000003941	rrs1	91	64.762	ENSCHIG00000009141	RRS1	82	66.000	Capra_hircus
ENSDARG00000003941	rrs1	93	65.217	ENSCPOG00000000647	RRS1	84	67.000	Cavia_porcellus
ENSDARG00000003941	rrs1	93	65.231	ENSCCAG00000032186	RRS1	82	67.333	Cebus_capucinus
ENSDARG00000003941	rrs1	91	66.032	ENSCATG00000016944	RRS1	82	67.333	Cercocebus_atys
ENSDARG00000003941	rrs1	91	65.714	ENSCSAG00000018552	RRS1	82	67.000	Chlorocebus_sabaeus
ENSDARG00000003941	rrs1	91	65.714	ENSCHOG00000002455	RRS1	82	67.000	Choloepus_hoffmanni
ENSDARG00000003941	rrs1	90	55.000	ENSCPBG00000021374	RRS1	87	56.536	Chrysemys_picta_bellii
ENSDARG00000003941	rrs1	94	52.454	ENSCING00000002177	-	89	55.017	Ciona_intestinalis
ENSDARG00000003941	rrs1	98	50.000	ENSCSAVG00000011819	-	89	53.979	Ciona_savignyi
ENSDARG00000003941	rrs1	94	65.443	ENSCANG00000012718	RRS1	82	67.333	Colobus_angolensis_palliatus
ENSDARG00000003941	rrs1	97	64.985	ENSCGRG00001002391	-	82	67.000	Cricetulus_griseus_chok1gshd
ENSDARG00000003941	rrs1	95	64.653	ENSCGRG00001015575	-	86	66.000	Cricetulus_griseus_chok1gshd
ENSDARG00000003941	rrs1	86	64.883	ENSCSEG00000014750	rrs1	81	64.883	Cynoglossus_semilaevis
ENSDARG00000003941	rrs1	86	65.217	ENSCVAG00000017878	rrs1	84	65.217	Cyprinodon_variegatus
ENSDARG00000003941	rrs1	90	65.605	ENSDNOG00000017900	RRS1	81	67.000	Dasypus_novemcinctus
ENSDARG00000003941	rrs1	63	65.297	ENSDORG00000026331	Rrs1	71	67.380	Dipodomys_ordii
ENSDARG00000003941	rrs1	94	46.000	FBgn0052409	CG32409	84	49.831	Drosophila_melanogaster
ENSDARG00000003941	rrs1	58	67.164	ENSETEG00000000935	-	55	67.164	Echinops_telfairi
ENSDARG00000003941	rrs1	83	60.417	ENSEBUG00000013506	rrs1	96	59.298	Eptatretus_burgeri
ENSDARG00000003941	rrs1	91	65.714	ENSEASG00005001691	RRS1	82	67.000	Equus_asinus_asinus
ENSDARG00000003941	rrs1	95	63.664	ENSECAG00000004492	RRS1	90	67.000	Equus_caballus
ENSDARG00000003941	rrs1	91	65.079	ENSEEUG00000013719	RRS1	82	66.333	Erinaceus_europaeus
ENSDARG00000003941	rrs1	90	64.537	ENSFCAG00000014332	RRS1	82	66.333	Felis_catus
ENSDARG00000003941	rrs1	90	54.037	ENSGALG00000030890	RRS1	86	55.519	Gallus_gallus
ENSDARG00000003941	rrs1	91	73.651	ENSGACG00000002969	rrs1	84	74.916	Gasterosteus_aculeatus
ENSDARG00000003941	rrs1	90	55.937	ENSGAGG00000023718	RRS1	85	57.190	Gopherus_agassizii
ENSDARG00000003941	rrs1	91	66.032	ENSGGOG00000026663	RRS1	82	67.333	Gorilla_gorilla
ENSDARG00000003941	rrs1	94	64.526	ENSHGLG00000021423	RRS1	82	66.667	Heterocephalus_glaber_female
ENSDARG00000003941	rrs1	94	64.526	ENSHGLG00100020640	RRS1	82	66.667	Heterocephalus_glaber_male
ENSDARG00000003941	rrs1	97	72.485	ENSHCOG00000015358	rrs1	84	75.248	Hippocampus_comes
ENSDARG00000003941	rrs1	100	76.068	ENSIPUG00000014412	rrs1	86	80.602	Ictalurus_punctatus
ENSDARG00000003941	rrs1	98	62.216	ENSSTOG00000026310	RRS1	82	67.333	Ictidomys_tridecemlineatus
ENSDARG00000003941	rrs1	88	66.230	ENSJJAG00000011507	-	82	66.667	Jaculus_jaculus
ENSDARG00000003941	rrs1	80	58.423	ENSJJAG00000020395	-	81	58.065	Jaculus_jaculus
ENSDARG00000003941	rrs1	86	75.920	ENSKMAG00000008238	rrs1	88	75.920	Kryptolebias_marmoratus
ENSDARG00000003941	rrs1	88	75.658	ENSLACG00000004058	RRS1	91	76.589	Latimeria_chalumnae
ENSDARG00000003941	rrs1	100	78.035	ENSLOCG00000017812	rrs1	87	82.609	Lepisosteus_oculatus
ENSDARG00000003941	rrs1	91	66.349	ENSLAFG00000015405	RRS1	82	67.667	Loxodonta_africana
ENSDARG00000003941	rrs1	98	62.500	ENSMFAG00000042747	RRS1	82	67.333	Macaca_fascicularis
ENSDARG00000003941	rrs1	98	62.500	ENSMMUG00000000886	RRS1	82	67.333	Macaca_mulatta
ENSDARG00000003941	rrs1	98	62.500	ENSMNEG00000011696	RRS1	82	67.333	Macaca_nemestrina
ENSDARG00000003941	rrs1	91	66.032	ENSMLEG00000004794	RRS1	82	67.333	Mandrillus_leucophaeus
ENSDARG00000003941	rrs1	86	76.431	ENSMZEG00005004349	RRS1	84	76.254	Maylandia_zebra
ENSDARG00000003941	rrs1	97	64.985	ENSMAUG00000005392	Rrs1	82	67.000	Mesocricetus_auratus
ENSDARG00000003941	rrs1	98	64.826	ENSMOCG00000015862	Rrs1	78	67.333	Microtus_ochrogaster
ENSDARG00000003941	rrs1	90	63.467	ENSMODG00000024952	RRS1	83	65.449	Monodelphis_domestica
ENSDARG00000003941	rrs1	97	63.988	MGP_CAROLIEiJ_G0013936	Rrs1	83	66.333	Mus_caroli
ENSDARG00000003941	rrs1	97	63.988	ENSMUSG00000061024	Rrs1	82	66.333	Mus_musculus
ENSDARG00000003941	rrs1	95	62.727	MGP_PahariEiJ_G0023883	Rrs1	82	65.000	Mus_pahari
ENSDARG00000003941	rrs1	97	63.988	MGP_SPRETEiJ_G0014739	Rrs1	82	66.333	Mus_spretus
ENSDARG00000003941	rrs1	95	64.653	ENSMPUG00000018626	RRS1	81	67.000	Mustela_putorius_furo
ENSDARG00000003941	rrs1	94	63.914	ENSNGAG00000012904	Rrs1	82	66.333	Nannospalax_galili
ENSDARG00000003941	rrs1	68	67.932	ENSNLEG00000027730	RRS1	73	69.507	Nomascus_leucogenys
ENSDARG00000003941	rrs1	95	71.601	ENSONIG00000014187	rrs1	87	76.589	Oreochromis_niloticus
ENSDARG00000003941	rrs1	92	59.509	ENSOANG00000012348	RRS1	81	61.794	Ornithorhynchus_anatinus
ENSDARG00000003941	rrs1	90	65.815	ENSOCUG00000013490	RRS1	81	67.667	Oryctolagus_cuniculus
ENSDARG00000003941	rrs1	91	65.287	ENSOMEG00000008525	rrs1	85	66.555	Oryzias_melastigma
ENSDARG00000003941	rrs1	94	64.220	ENSOGAG00000001085	RRS1	82	66.000	Otolemur_garnettii
ENSDARG00000003941	rrs1	91	60.317	ENSOARG00000017417	RRS1	80	61.667	Ovis_aries
ENSDARG00000003941	rrs1	91	65.714	ENSPPAG00000024378	RRS1	82	67.000	Pan_paniscus
ENSDARG00000003941	rrs1	90	64.856	ENSPPRG00000021408	RRS1	82	66.667	Panthera_pardus
ENSDARG00000003941	rrs1	91	65.397	ENSPTRG00000030988	RRS1	82	66.667	Pan_troglodytes
ENSDARG00000003941	rrs1	100	47.922	ENSPANG00000035974	RRS1	78	48.829	Papio_anubis
ENSDARG00000003941	rrs1	86	76.768	ENSPKIG00000007953	rrs1	87	76.768	Paramormyrops_kingsleyae
ENSDARG00000003941	rrs1	95	64.955	ENSPEMG00000014427	Rrs1	82	67.000	Peromyscus_maniculatus_bairdii
ENSDARG00000003941	rrs1	86	61.279	ENSPMAG00000006513	rrs1	79	61.279	Petromyzon_marinus
ENSDARG00000003941	rrs1	88	63.072	ENSPCIG00000026695	RRS1	84	63.787	Phascolarctos_cinereus
ENSDARG00000003941	rrs1	93	78.704	ENSPFOG00000020722	rrs1	92	80.602	Poecilia_formosa
ENSDARG00000003941	rrs1	86	67.559	ENSPREG00000019960	rrs1	83	67.559	Poecilia_reticulata
ENSDARG00000003941	rrs1	85	67.230	ENSPPYG00000018637	RRS1	99	67.230	Pongo_abelii
ENSDARG00000003941	rrs1	94	65.138	ENSPCAG00000009115	RRS1	82	67.000	Procavia_capensis
ENSDARG00000003941	rrs1	84	79.038	ENSPNAG00000021707	rrs1	85	78.333	Pygocentrus_nattereri
ENSDARG00000003941	rrs1	95	62.170	ENSRNOG00000007240	Rrs1	82	66.000	Rattus_norvegicus
ENSDARG00000003941	rrs1	91	65.714	ENSRBIG00000009132	RRS1	82	67.000	Rhinopithecus_bieti
ENSDARG00000003941	rrs1	91	65.714	ENSRROG00000013472	RRS1	82	67.000	Rhinopithecus_roxellana
ENSDARG00000003941	rrs1	50	38.660	YOR294W	-	95	38.660	Saccharomyces_cerevisiae
ENSDARG00000003941	rrs1	86	67.000	ENSSBOG00000012639	-	85	67.000	Saimiri_boliviensis_boliviensis
ENSDARG00000003941	rrs1	88	66.230	ENSSBOG00000011006	-	85	67.000	Saimiri_boliviensis_boliviensis
ENSDARG00000003941	rrs1	84	60.137	ENSSFOG00015015772	rrs1	81	60.137	Scleropages_formosus
ENSDARG00000003941	rrs1	84	78.425	ENSSMAG00000015226	rrs1	80	78.425	Scophthalmus_maximus
ENSDARG00000003941	rrs1	91	48.571	ENSSARG00000006976	RRS1	63	62.832	Sorex_araneus
ENSDARG00000003941	rrs1	91	65.397	ENSSSCG00000006214	RRS1	82	66.667	Sus_scrofa
ENSDARG00000003941	rrs1	92	75.710	ENSTRUG00000008796	rrs1	88	78.547	Takifugu_rubripes
ENSDARG00000003941	rrs1	86	79.125	ENSTNIG00000004026	rrs1	88	78.930	Tetraodon_nigroviridis
ENSDARG00000003941	rrs1	91	65.397	ENSTBEG00000014752	RRS1	82	66.667	Tupaia_belangeri
ENSDARG00000003941	rrs1	97	63.988	ENSUAMG00000008502	RRS1	82	66.667	Ursus_americanus
ENSDARG00000003941	rrs1	90	64.537	ENSVVUG00000018452	RRS1	82	66.333	Vulpes_vulpes
ENSDARG00000003941	rrs1	86	79.798	ENSXCOG00000009809	rrs1	85	79.599	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000055	ribosomal large subunit export from nucleus	21873635.	IBA	Process
GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0030687	preribosome, large subunit precursor	21873635.	IBA	Component
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0042273	ribosomal large subunit biogenesis	21873635.	IBA	Process