EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000003968 (Gene tree)
Gene ID: 565767
Gene Symbol: larp6b
Alias: im:7142825|wu:fa55b04|zgc:162969
Full Name: La ribonucleoprotein domain family%2C member 6b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 6258 bases
Position: chr11:6446235-6452492
Accession: ZDB-GENE-041008-244
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000118476	La	PF05383.17	1.4e-17	1	1
ENSDARP00000019822	La	PF05383.17	9.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000004483	-	1667	-	ENSDARP00000019822	471 (aa)	-	A8B8W4
ENSDART00000134957	-	849	-	ENSDARP00000121384	207 (aa)	-	A8B8W0
ENSDART00000137879	-	539	-	ENSDARP00000118476	134 (aa)	-	A8B8W9

Gene Model

Click here to download ENSDARG00000003968's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000003968's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000003968	larp6b	91	48.361	ENSDARG00000005355	larp6a	96	39.813

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000003968	larp6b	53	53.521	ENSAPOG00000003568	-	56	49.510	Acanthochromis_polyacanthus
ENSDARG00000003968	larp6b	84	37.531	ENSAOCG00000004646	larp6b	88	37.531	Amphiprion_ocellaris
ENSDARG00000003968	larp6b	53	54.930	ENSAPEG00000022748	-	51	49.763	Amphiprion_percula
ENSDARG00000003968	larp6b	86	36.829	ENSATEG00000021222	-	88	36.829	Anabas_testudineus
ENSDARG00000003968	larp6b	88	36.145	ENSACLG00000009988	larp6b	88	35.782	Astatotilapia_calliptera
ENSDARG00000003968	larp6b	100	74.627	ENSAMXG00000018956	larp6b	100	70.417	Astyanax_mexicanus
ENSDARG00000003968	larp6b	57	43.421	ENSCING00000018361	-	59	36.158	Ciona_intestinalis
ENSDARG00000003968	larp6b	77	50.000	ENSCING00000008613	-	87	33.933	Ciona_intestinalis
ENSDARG00000003968	larp6b	57	47.436	ENSCING00000024994	-	77	32.340	Ciona_intestinalis
ENSDARG00000003968	larp6b	90	46.281	ENSCSAVG00000011718	-	80	40.756	Ciona_savignyi
ENSDARG00000003968	larp6b	57	46.053	ENSCSAVG00000005641	-	57	42.593	Ciona_savignyi
ENSDARG00000003968	larp6b	50	58.209	ENSCVAG00000012145	-	77	42.439	Cyprinodon_variegatus
ENSDARG00000003968	larp6b	100	65.217	ENSELUG00000021677	larp6b	100	63.825	Esox_lucius
ENSDARG00000003968	larp6b	97	34.573	ENSHBUG00000012344	larp6b	93	34.267	Haplochromis_burtoni
ENSDARG00000003968	larp6b	100	71.642	ENSIPUG00000007609	larp6b	100	69.053	Ictalurus_punctatus
ENSDARG00000003968	larp6b	74	50.505	ENSLBEG00000016460	-	74	48.696	Labrus_bergylta
ENSDARG00000003968	larp6b	86	36.855	ENSMAMG00000005509	-	86	36.855	Mastacembelus_armatus
ENSDARG00000003968	larp6b	88	35.904	ENSMZEG00005024390	larp6b	88	35.211	Maylandia_zebra
ENSDARG00000003968	larp6b	88	35.529	ENSNBRG00000012748	larp6b	89	35.529	Neolamprologus_brichardi
ENSDARG00000003968	larp6b	82	70.909	ENSPKIG00000025605	larp6b	92	58.850	Paramormyrops_kingsleyae
ENSDARG00000003968	larp6b	53	57.746	ENSPLAG00000005133	-	54	48.485	Poecilia_latipinna
ENSDARG00000003968	larp6b	53	57.746	ENSPMEG00000019947	-	54	48.485	Poecilia_mexicana
ENSDARG00000003968	larp6b	88	35.071	ENSPNYG00000007025	larp6b	86	34.732	Pundamilia_nyererei
ENSDARG00000003968	larp6b	100	77.612	ENSPNAG00000023854	larp6b	99	72.059	Pygocentrus_nattereri
ENSDARG00000003968	larp6b	53	57.746	ENSSDUG00000009842	-	61	49.020	Seriola_dumerili
ENSDARG00000003968	larp6b	85	36.855	ENSSLDG00000017081	-	80	36.855	Seriola_lalandi_dorsalis
ENSDARG00000003968	larp6b	53	58.108	ENSSPAG00000014320	-	67	52.381	Stegastes_partitus
ENSDARG00000003968	larp6b	53	57.746	ENSXCOG00000018917	-	51	48.485	Xiphophorus_couchianus
ENSDARG00000003968	larp6b	53	57.746	ENSXMAG00000025734	-	52	48.485	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:1990904	ribonucleoprotein complex	-	IEA	Component