EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000004151 (Gene tree)
Gene ID
553778
Gene Symbol
rab23
Alias
zgc:110261
Full Name
RAB23%2C member RAS oncogene family
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Plus strand
Length
13050 bases
Position
chr13:1381953-1395002
Accession
ZDB-GENE-050522-328
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000002531MMR_HSR1PF01926.234.2e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000019983-1521-ENSDARP00000002531237 (aa)-B8A453
Gene Model
Click here to download ENSDARG00000004151's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000004151's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000004151rab236130.822ENSDARG00000038225nras7630.822
ENSDARG00000004151rab236733.129ENSDARG00000062865mras7933.784
ENSDARG00000004151rab237235.465ENSDARG00000098344rab18b8335.465
ENSDARG00000004151rab237534.426ENSDARG00000021287rab7b8033.929
ENSDARG00000004151rab237738.919ENSDARG00000014058rab366638.506
ENSDARG00000004151rab236837.267ENSDARG00000052954rab25b6837.324
ENSDARG00000004151rab237231.214ENSDARG00000006553rras8731.214
ENSDARG00000004151rab236640.506ENSDARG00000029885rab416940.411
ENSDARG00000004151rab238033.505ENSDARG00000052263rab1aa8735.057
ENSDARG00000004151rab236632.335ENSDARG00000015611rasl11b6330.968
ENSDARG00000004151rab237036.310ENSDARG00000019312rab39ba7336.538
ENSDARG00000004151rab236135.374ENSDARG00000052290rab33ba5634.815
ENSDARG00000004151rab237334.682ENSDARG00000029663rab1ab7636.601
ENSDARG00000004151rab237334.270ENSDARG00000102580CU571310.17933.929
ENSDARG00000004151rab236538.961ENSDARG00000058800rab25a6838.028
ENSDARG00000004151rab237334.682ENSDARG00000007257rab5ab7533.540
ENSDARG00000004151rab237535.393ENSDARG00000058425rab35b8635.838
ENSDARG00000004151rab237036.310ENSDARG00000034215rab42a6938.776
ENSDARG00000004151rab238034.555ENSDARG00000041450rab11a8034.884
ENSDARG00000004151rab237034.503ENSDARG00000020497rab7a7533.974
ENSDARG00000004151rab237633.508ENSDARG00000003257zgc:1015597632.961
ENSDARG00000004151rab237236.628ENSDARG00000055291rab18a8336.628
ENSDARG00000004151rab236837.654ENSDARG00000041878rab11ba7038.462
ENSDARG00000004151rab237435.000ENSDARG00000087243zgc:1009187934.545
ENSDARG00000004151rab237134.078ENSDARG00000010977rab34b7034.078
ENSDARG00000004151rab236733.750ENSDARG00000015807rab22a7633.108
ENSDARG00000004151rab236133.562ENSDARG00000098497hrasa7633.562
ENSDARG00000004151rab236639.241ENSDARG00000103714rab6a7039.041
ENSDARG00000004151rab238135.468ENSDARG00000045628rab34a7433.333
ENSDARG00000004151rab237034.731ENSDARG00000020261rab2a7334.839
ENSDARG00000004151rab237334.104ENSDARG00000058044rab1ba7835.948
ENSDARG00000004151rab237733.511ENSDARG00000035188rab14l8233.523
ENSDARG00000004151rab237638.251ENSDARG00000034771rab138638.596
ENSDARG00000004151rab237036.310ENSDARG00000036501rab39bb7336.538
ENSDARG00000004151rab238038.421ENSDARG00000102078CABZ01072548.18340.000
ENSDARG00000004151rab237237.714ENSDARG00000026098si:dkey-13a21.47937.423
ENSDARG00000004151rab236639.873ENSDARG00000031343rab6bb7039.726
ENSDARG00000004151rab236132.877ENSDARG00000005651hrasb9032.824
ENSDARG00000004151rab236937.576ENSDARG00000103934megf88837.908
ENSDARG00000004151rab237235.673ENSDARG00000033056zgc:1719277635.849
ENSDARG00000004151rab237035.542ENSDARG00000114797rab3b6836.735
ENSDARG00000004151rab236136.735ENSDARG00000036252rras27834.375
ENSDARG00000004151rab236535.849ENSDARG00000045027rab9a7334.694
ENSDARG00000004151rab237136.471ENSDARG00000018602rab5aa7335.443
ENSDARG00000004151rab237636.667ENSDARG00000037884rab309036.667
ENSDARG00000004151rab238031.980ENSDARG00000037967si:dkey-16l2.168238.144
ENSDARG00000004151rab236640.506ENSDARG00000034522rab6ba7139.869
ENSDARG00000004151rab235936.620ENSDARG00000018107rab3da7338.211
ENSDARG00000004151rab237035.542ENSDARG00000026484rab157136.424
ENSDARG00000004151rab236732.716ENSDARG00000010844kras8532.716
ENSDARG00000004151rab237535.196ENSDARG00000090086rab11bb7335.625
ENSDARG00000004151rab237134.286ENSDARG00000057394rab33a6733.742
ENSDARG00000004151rab236132.877ENSDARG00000013161zgc:555587732.877
ENSDARG00000004151rab236837.654ENSDARG00000014340rab11al6637.762
ENSDARG00000004151rab236632.500ENSDARG00000075285si:ch73-116o1.27632.500
ENSDARG00000004151rab236934.132ENSDARG00000100379si:dkey-34d22.28435.897
ENSDARG00000004151rab237734.043ENSDARG00000074246rab148234.091
ENSDARG00000004151rab237534.426ENSDARG00000103391rab9b8133.333
ENSDARG00000004151rab236938.554ENSDARG00000089428rab126638.961
ENSDARG00000004151rab237532.584ENSDARG00000056479rab1bb7934.177
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000004151rab239984.746ENSG00000112210RAB239984.746Homo_sapiens
ENSDARG00000004151rab2310087.342ENSAPOG00000008892rab2310087.342Acanthochromis_polyacanthus
ENSDARG00000004151rab239983.898ENSAMEG00000006825RAB239983.898Ailuropoda_melanoleuca
ENSDARG00000004151rab2310075.949ENSACIG00000020496rab2310075.949Amphilophus_citrinellus
ENSDARG00000004151rab2310087.342ENSAOCG00000004234rab2310087.342Amphiprion_ocellaris
ENSDARG00000004151rab2310087.342ENSAPEG00000019758rab2310087.342Amphiprion_percula
ENSDARG00000004151rab2310086.920ENSATEG00000020913rab2310086.920Anabas_testudineus
ENSDARG00000004151rab237592.090ENSAPLG00000003715RAB2310092.090Anas_platyrhynchos
ENSDARG00000004151rab239979.325ENSACAG00000006656RAB239979.325Anolis_carolinensis
ENSDARG00000004151rab239984.746ENSANAG00000027052-9984.746Aotus_nancymaae
ENSDARG00000004151rab2310088.186ENSACLG00000002819rab2310088.186Astatotilapia_calliptera
ENSDARG00000004151rab2310090.717ENSAMXG00000014960rab2310090.717Astyanax_mexicanus
ENSDARG00000004151rab239983.051ENSBTAG00000005362RAB239983.051Bos_taurus
ENSDARG00000004151rab239984.746ENSCJAG00000010247RAB239984.746Callithrix_jacchus
ENSDARG00000004151rab239984.322ENSCAFG00000002459RAB239984.322Canis_familiaris
ENSDARG00000004151rab239984.322ENSCAFG00020015900RAB239984.322Canis_lupus_dingo
ENSDARG00000004151rab239983.051ENSCHIG00000009815RAB239983.051Capra_hircus
ENSDARG00000004151rab2310085.232ENSTSYG00000029126RAB2310085.232Carlito_syrichta
ENSDARG00000004151rab239980.932ENSCPOG00000030218RAB239980.932Cavia_porcellus
ENSDARG00000004151rab239984.322ENSCCAG00000020364RAB239984.322Cebus_capucinus
ENSDARG00000004151rab239985.169ENSCATG00000027876RAB239985.169Cercocebus_atys
ENSDARG00000004151rab239983.051ENSCLAG00000000797RAB239983.051Chinchilla_lanigera
ENSDARG00000004151rab239984.322ENSCSAG00000013438RAB239984.322Chlorocebus_sabaeus
ENSDARG00000004151rab239983.475ENSCPBG00000022640RAB239983.475Chrysemys_picta_bellii
ENSDARG00000004151rab2310067.078ENSCING00000001155-10067.901Ciona_intestinalis
ENSDARG00000004151rab2310064.315ENSCSAVG00000001356-10065.145Ciona_savignyi
ENSDARG00000004151rab239984.322ENSCANG00000031065RAB239984.322Colobus_angolensis_palliatus
ENSDARG00000004151rab239985.169ENSCGRG00001008994Rab239985.169Cricetulus_griseus_chok1gshd
ENSDARG00000004151rab239984.255ENSCGRG00000013630Rab239984.255Cricetulus_griseus_crigri
ENSDARG00000004151rab2310076.793ENSCSEG00000010565rab2310076.793Cynoglossus_semilaevis
ENSDARG00000004151rab2310085.654ENSCVAG00000020501rab2310085.654Cyprinodon_variegatus
ENSDARG00000004151rab239982.203ENSDNOG00000015501RAB239982.203Dasypus_novemcinctus
ENSDARG00000004151rab2310083.966ENSDORG00000028344Rab2310083.966Dipodomys_ordii
ENSDARG00000004151rab237473.143FBgn0037364Rab236573.143Drosophila_melanogaster
ENSDARG00000004151rab239764.530ENSEBUG00000010861-9264.530Eptatretus_burgeri
ENSDARG00000004151rab239985.169ENSEASG00005003529RAB239985.169Equus_asinus_asinus
ENSDARG00000004151rab239984.746ENSECAG00000013427RAB239984.746Equus_caballus
ENSDARG00000004151rab2310083.966ENSEEUG00000015045RAB2310083.966Erinaceus_europaeus
ENSDARG00000004151rab2310086.498ENSELUG00000020788rab2310086.498Esox_lucius
ENSDARG00000004151rab239984.746ENSFCAG00000044358RAB239984.746Felis_catus
ENSDARG00000004151rab239983.898ENSFALG00000001708RAB239983.898Ficedula_albicollis
ENSDARG00000004151rab239982.627ENSFDAG00000014834RAB239982.627Fukomys_damarensis
ENSDARG00000004151rab2310086.076ENSFHEG00000023069rab2310086.076Fundulus_heteroclitus
ENSDARG00000004151rab2310087.342ENSGMOG00000005102rab2310087.342Gadus_morhua
ENSDARG00000004151rab239983.475ENSGALG00000016279RAB239983.475Gallus_gallus
ENSDARG00000004151rab2310086.076ENSGAFG00000007684rab2310086.076Gambusia_affinis
ENSDARG00000004151rab2310087.342ENSGACG00000006151rab2310087.342Gasterosteus_aculeatus
ENSDARG00000004151rab239983.898ENSGAGG00000012709RAB239983.898Gopherus_agassizii
ENSDARG00000004151rab2310077.637ENSHBUG00000007966rab2310077.637Haplochromis_burtoni
ENSDARG00000004151rab239970.417ENSHGLG00000009371-9969.583Heterocephalus_glaber_female
ENSDARG00000004151rab239984.322ENSHGLG00000013030-9984.322Heterocephalus_glaber_female
ENSDARG00000004151rab239984.322ENSHGLG00100005945-9984.322Heterocephalus_glaber_male
ENSDARG00000004151rab239970.417ENSHGLG00100017177-9969.583Heterocephalus_glaber_male
ENSDARG00000004151rab2310074.684ENSHCOG00000013919rab2310074.684Hippocampus_comes
ENSDARG00000004151rab2310079.747ENSIPUG00000016494rab2310079.747Ictalurus_punctatus
ENSDARG00000004151rab239984.746ENSSTOG00000010962RAB239984.746Ictidomys_tridecemlineatus
ENSDARG00000004151rab239984.746ENSJJAG00000020094Rab239984.746Jaculus_jaculus
ENSDARG00000004151rab2310085.654ENSKMAG00000018270rab2310085.654Kryptolebias_marmoratus
ENSDARG00000004151rab2310086.498ENSLBEG00000013176rab2310086.498Labrus_bergylta
ENSDARG00000004151rab2310084.388ENSLACG00000004025RAB2310084.388Latimeria_chalumnae
ENSDARG00000004151rab2310087.083ENSLOCG00000016999rab2310087.083Lepisosteus_oculatus
ENSDARG00000004151rab239984.746ENSLAFG00000007209RAB239984.746Loxodonta_africana
ENSDARG00000004151rab239985.169ENSMFAG00000032369RAB239985.169Macaca_fascicularis
ENSDARG00000004151rab239985.169ENSMMUG00000018003RAB239985.169Macaca_mulatta
ENSDARG00000004151rab239985.169ENSMNEG00000037012RAB239985.169Macaca_nemestrina
ENSDARG00000004151rab239985.169ENSMLEG00000042429RAB239985.169Mandrillus_leucophaeus
ENSDARG00000004151rab2310087.342ENSMAMG00000015456rab2310087.342Mastacembelus_armatus
ENSDARG00000004151rab2310088.186ENSMZEG00005005441rab2310088.186Maylandia_zebra
ENSDARG00000004151rab239984.322ENSMGAG00000013882RAB239984.322Meleagris_gallopavo
ENSDARG00000004151rab239985.593ENSMICG00000014037RAB239985.593Microcebus_murinus
ENSDARG00000004151rab239985.169ENSMOCG00000000444Rab239985.169Microtus_ochrogaster
ENSDARG00000004151rab2310075.949ENSMMOG00000007703rab2310075.949Mola_mola
ENSDARG00000004151rab239983.898ENSMODG00000018720RAB239983.898Monodelphis_domestica
ENSDARG00000004151rab2310086.076ENSMALG00000002136rab2310086.076Monopterus_albus
ENSDARG00000004151rab239983.898MGP_CAROLIEiJ_G0014015Rab239983.898Mus_caroli
ENSDARG00000004151rab239984.188ENSMUSG00000004768Rab239983.475Mus_musculus
ENSDARG00000004151rab239983.051MGP_PahariEiJ_G0027261Rab239983.051Mus_pahari
ENSDARG00000004151rab239983.475MGP_SPRETEiJ_G0014820Rab239983.475Mus_spretus
ENSDARG00000004151rab239976.371ENSMPUG00000002642RAB239976.371Mustela_putorius_furo
ENSDARG00000004151rab239984.746ENSMLUG00000004058RAB239984.746Myotis_lucifugus
ENSDARG00000004151rab239984.322ENSNGAG00000018038Rab239984.322Nannospalax_galili
ENSDARG00000004151rab2310088.186ENSNBRG00000013691rab2310088.186Neolamprologus_brichardi
ENSDARG00000004151rab239985.169ENSNLEG00000027830RAB239985.169Nomascus_leucogenys
ENSDARG00000004151rab239983.333ENSODEG00000016056RAB239982.627Octodon_degus
ENSDARG00000004151rab2310087.395ENSONIG00000009749rab2310087.395Oreochromis_niloticus
ENSDARG00000004151rab239984.322ENSOANG00000001398RAB239984.322Ornithorhynchus_anatinus
ENSDARG00000004151rab239984.746ENSOCUG00000004816RAB239984.746Oryctolagus_cuniculus
ENSDARG00000004151rab2310087.342ENSORLG00000010115rab2310087.342Oryzias_latipes
ENSDARG00000004151rab2310087.342ENSORLG00020020220rab2310087.342Oryzias_latipes_hni
ENSDARG00000004151rab2310086.498ENSORLG00015004033rab2310086.498Oryzias_latipes_hsok
ENSDARG00000004151rab2310086.920ENSOMEG00000001706rab2310086.920Oryzias_melastigma
ENSDARG00000004151rab239984.322ENSOGAG00000005675RAB239984.322Otolemur_garnettii
ENSDARG00000004151rab239983.051ENSOARG00000005749RAB239983.051Ovis_aries
ENSDARG00000004151rab239984.746ENSPPAG00000010023RAB239984.746Pan_paniscus
ENSDARG00000004151rab239984.322ENSPPRG00000012453RAB239984.322Panthera_pardus
ENSDARG00000004151rab239984.746ENSPTIG00000009435RAB239984.746Panthera_tigris_altaica
ENSDARG00000004151rab239985.169ENSPTRG00000043341RAB239985.169Pan_troglodytes
ENSDARG00000004151rab239985.169ENSPANG00000017772RAB239985.169Papio_anubis
ENSDARG00000004151rab238485.500ENSPKIG00000024310rab239985.500Paramormyrops_kingsleyae
ENSDARG00000004151rab239983.475ENSPSIG00000015579RAB239983.475Pelodiscus_sinensis
ENSDARG00000004151rab2310075.949ENSPMGG00000008577rab2310075.949Periophthalmus_magnuspinnatus
ENSDARG00000004151rab239984.746ENSPEMG00000023271Rab239984.746Peromyscus_maniculatus_bairdii
ENSDARG00000004151rab2310069.198ENSPMAG00000006835-10069.198Petromyzon_marinus
ENSDARG00000004151rab239983.475ENSPCIG00000007267RAB239983.475Phascolarctos_cinereus
ENSDARG00000004151rab2310086.498ENSPFOG00000011493rab2310086.498Poecilia_formosa
ENSDARG00000004151rab2310086.076ENSPLAG00000011697rab2310086.076Poecilia_latipinna
ENSDARG00000004151rab2310086.498ENSPMEG00000017300rab2310086.498Poecilia_mexicana
ENSDARG00000004151rab2310075.527ENSPREG00000022509rab2310075.527Poecilia_reticulata
ENSDARG00000004151rab239985.169ENSPPYG00000016739RAB239985.169Pongo_abelii
ENSDARG00000004151rab239986.017ENSPCOG00000028471RAB239986.017Propithecus_coquereli
ENSDARG00000004151rab239976.695ENSPVAG00000017693RAB239976.695Pteropus_vampyrus
ENSDARG00000004151rab2310088.186ENSPNYG00000019639rab2310088.186Pundamilia_nyererei
ENSDARG00000004151rab2310090.717ENSPNAG00000024728rab2310090.717Pygocentrus_nattereri
ENSDARG00000004151rab239984.746ENSRNOG00000012629Rab239984.746Rattus_norvegicus
ENSDARG00000004151rab239980.498ENSRBIG00000030547RAB239980.498Rhinopithecus_bieti
ENSDARG00000004151rab239984.746ENSRROG00000035920RAB239984.746Rhinopithecus_roxellana
ENSDARG00000004151rab239984.322ENSSBOG00000033237RAB239984.322Saimiri_boliviensis_boliviensis
ENSDARG00000004151rab239984.322ENSSHAG00000006379RAB239984.322Sarcophilus_harrisii
ENSDARG00000004151rab2310089.030ENSSFOG00015012604rab2310089.030Scleropages_formosus
ENSDARG00000004151rab2310085.232ENSSMAG00000006341rab2310085.232Scophthalmus_maximus
ENSDARG00000004151rab2310086.920ENSSDUG00000023508rab2310086.920Seriola_dumerili
ENSDARG00000004151rab2310086.920ENSSLDG00000000287rab2310086.920Seriola_lalandi_dorsalis
ENSDARG00000004151rab239983.898ENSSARG00000013689RAB239983.898Sorex_araneus
ENSDARG00000004151rab239984.746ENSSPUG00000006274RAB239984.746Sphenodon_punctatus
ENSDARG00000004151rab2310087.342ENSSPAG00000010373rab2310087.342Stegastes_partitus
ENSDARG00000004151rab239982.627ENSSSCG00000029539RAB239982.627Sus_scrofa
ENSDARG00000004151rab239983.475ENSTGUG00000012794RAB239983.475Taeniopygia_guttata
ENSDARG00000004151rab2310084.388ENSTRUG00000015697rab2310084.388Takifugu_rubripes
ENSDARG00000004151rab2310085.232ENSTNIG00000016575rab2310085.232Tetraodon_nigroviridis
ENSDARG00000004151rab239984.322ENSUAMG00000013367RAB239984.322Ursus_americanus
ENSDARG00000004151rab239984.322ENSUMAG00000018629RAB239984.322Ursus_maritimus
ENSDARG00000004151rab238163.351ENSVPAG00000006805RAB2310063.351Vicugna_pacos
ENSDARG00000004151rab239984.746ENSVVUG00000008535RAB239984.746Vulpes_vulpes
ENSDARG00000004151rab2310077.731ENSXETG00000004449rab2310077.731Xenopus_tropicalis
ENSDARG00000004151rab2310085.654ENSXCOG00000011864rab2310085.654Xiphophorus_couchianus
ENSDARG00000004151rab2310086.076ENSXMAG00000009387rab2310086.076Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000045autophagosome assembly21873635.IBAProcess
GO:0003140determination of left/right asymmetry in lateral mesoderm24780629.IMPProcess
GO:0003924GTPase activity21873635.IBAFunction
GO:0003924GTPase activity-IEAFunction
GO:0005525GTP binding-IEAFunction
GO:0005776autophagosome21873635.IBAComponent
GO:0006886intracellular protein transport21873635.IBAProcess
GO:0010008endosome membrane21873635.IBAComponent
GO:0032482Rab protein signal transduction21873635.IBAProcess
GO:0035469determination of pancreatic left/right asymmetry24780629.IMPProcess
GO:0061371determination of heart left/right asymmetry24780629.IMPProcess
GO:0071910determination of liver left/right asymmetry24780629.IMPProcess

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us