EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000004174 (Gene tree)
Gene ID: 448949
Gene Symbol: cnot1
Alias: cdc39-like|im:7141761|kiaa1007l|wu:fc58h04|zgc:152902
Full Name: CCR4-NOT transcription complex%2C subunit 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 33362 bases
Position: chr25:17313568-17346929
Accession: ZDB-GENE-040915-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000111504	Not1	PF04054.15	5.4e-153	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000148321	-	847	-	-	- (aa)	-	-
ENSDART00000141311	-	879	-	ENSDARP00000116639	293 (aa)	-	F1R160
ENSDART00000125459	-	8236	-	ENSDARP00000111504	2374 (aa)	-	F1QFA6
ENSDART00000144339	-	791	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000004174's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000004174's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000004174	cnot1	100	90.046	ENSG00000125107	CNOT1	100	100.000	Homo_sapiens
ENSDARG00000004174	cnot1	100	90.898	ENSAPOG00000005042	cnot1	100	91.020	Acanthochromis_polyacanthus
ENSDARG00000004174	cnot1	100	90.088	ENSAMEG00000017298	CNOT1	100	90.130	Ailuropoda_melanoleuca
ENSDARG00000004174	cnot1	90	92.644	ENSACIG00000016003	cnot1	100	92.505	Amphilophus_citrinellus
ENSDARG00000004174	cnot1	100	92.950	ENSAPEG00000022342	cnot1	100	92.779	Amphiprion_percula
ENSDARG00000004174	cnot1	100	90.814	ENSATEG00000012892	cnot1	100	91.317	Anabas_testudineus
ENSDARG00000004174	cnot1	100	89.414	ENSAPLG00000007162	CNOT1	100	89.665	Anas_platyrhynchos
ENSDARG00000004174	cnot1	91	88.227	ENSACAG00000001602	CNOT1	98	88.607	Anolis_carolinensis
ENSDARG00000004174	cnot1	100	87.025	ENSANAG00000038198	CNOT1	100	87.151	Aotus_nancymaae
ENSDARG00000004174	cnot1	100	91.688	ENSACLG00000014234	cnot1	100	92.024	Astatotilapia_calliptera
ENSDARG00000004174	cnot1	100	95.164	ENSAMXG00000013170	cnot1	100	95.416	Astyanax_mexicanus
ENSDARG00000004174	cnot1	95	95.808	ENSBTAG00000020782	CNOT1	100	95.808	Bos_taurus
ENSDARG00000004174	cnot1	85	41.108	WBGene00002845	let-711	92	54.008	Caenorhabditis_elegans
ENSDARG00000004174	cnot1	100	89.774	ENSCJAG00000011318	CNOT1	100	92.000	Callithrix_jacchus
ENSDARG00000004174	cnot1	100	89.460	ENSCAFG00000008426	CNOT1	100	89.502	Canis_familiaris
ENSDARG00000004174	cnot1	100	88.810	ENSCAFG00020010156	CNOT1	100	92.644	Canis_lupus_dingo
ENSDARG00000004174	cnot1	100	89.899	ENSCHIG00000010452	CNOT1	100	89.941	Capra_hircus
ENSDARG00000004174	cnot1	100	89.858	ENSTSYG00000006888	CNOT1	100	89.983	Carlito_syrichta
ENSDARG00000004174	cnot1	100	86.253	ENSCPOG00000013026	CNOT1	100	86.127	Cavia_porcellus
ENSDARG00000004174	cnot1	100	88.516	ENSCCAG00000026333	CNOT1	100	88.391	Cebus_capucinus
ENSDARG00000004174	cnot1	100	89.816	ENSCATG00000032625	CNOT1	100	89.941	Cercocebus_atys
ENSDARG00000004174	cnot1	100	89.858	ENSCLAG00000006289	CNOT1	100	89.941	Chinchilla_lanigera
ENSDARG00000004174	cnot1	100	89.816	ENSCSAG00000004731	CNOT1	100	89.941	Chlorocebus_sabaeus
ENSDARG00000004174	cnot1	80	97.727	ENSCHOG00000009712	CNOT1	83	97.173	Choloepus_hoffmanni
ENSDARG00000004174	cnot1	93	95.248	ENSCPBG00000026222	CNOT1	98	95.248	Chrysemys_picta_bellii
ENSDARG00000004174	cnot1	100	58.758	ENSCING00000009149	-	100	58.882	Ciona_intestinalis
ENSDARG00000004174	cnot1	89	62.821	ENSCSAVG00000002414	-	95	79.470	Ciona_savignyi
ENSDARG00000004174	cnot1	100	88.057	ENSCANG00000040534	CNOT1	100	88.181	Colobus_angolensis_palliatus
ENSDARG00000004174	cnot1	100	89.256	ENSCGRG00001016365	Cnot1	100	89.732	Cricetulus_griseus_chok1gshd
ENSDARG00000004174	cnot1	100	89.256	ENSCGRG00000001714	Cnot1	100	89.732	Cricetulus_griseus_crigri
ENSDARG00000004174	cnot1	100	89.790	ENSCVAG00000018930	cnot1	100	89.664	Cyprinodon_variegatus
ENSDARG00000004174	cnot1	100	87.599	ENSDNOG00000013250	CNOT1	100	87.558	Dasypus_novemcinctus
ENSDARG00000004174	cnot1	99	46.317	FBgn0085436	Not1	99	48.169	Drosophila_melanogaster
ENSDARG00000004174	cnot1	84	94.277	ENSETEG00000012806	CNOT1	84	94.277	Echinops_telfairi
ENSDARG00000004174	cnot1	81	75.857	ENSEBUG00000011534	cnot1	95	75.857	Eptatretus_burgeri
ENSDARG00000004174	cnot1	95	95.427	ENSEASG00005005819	CNOT1	100	95.808	Equus_asinus_asinus
ENSDARG00000004174	cnot1	100	89.983	ENSECAG00000009889	CNOT1	100	89.983	Equus_caballus
ENSDARG00000004174	cnot1	89	88.850	ENSEEUG00000006015	CNOT1	90	88.850	Erinaceus_europaeus
ENSDARG00000004174	cnot1	100	93.615	ENSELUG00000014085	cnot1	100	93.615	Esox_lucius
ENSDARG00000004174	cnot1	100	89.595	ENSFCAG00000025155	CNOT1	100	89.636	Felis_catus
ENSDARG00000004174	cnot1	100	89.564	ENSFALG00000007285	CNOT1	100	89.816	Ficedula_albicollis
ENSDARG00000004174	cnot1	100	89.816	ENSFDAG00000013399	CNOT1	100	89.899	Fukomys_damarensis
ENSDARG00000004174	cnot1	100	92.411	ENSFHEG00000020574	cnot1	100	92.704	Fundulus_heteroclitus
ENSDARG00000004174	cnot1	91	93.324	ENSGMOG00000012864	cnot1	100	93.510	Gadus_morhua
ENSDARG00000004174	cnot1	100	89.438	ENSGALG00000002301	CNOT1	100	89.690	Gallus_gallus
ENSDARG00000004174	cnot1	100	91.390	ENSGAFG00000015005	cnot1	100	91.733	Gambusia_affinis
ENSDARG00000004174	cnot1	91	93.513	ENSGACG00000002606	cnot1	100	96.970	Gasterosteus_aculeatus
ENSDARG00000004174	cnot1	100	90.151	ENSGAGG00000022646	CNOT1	100	91.052	Gopherus_agassizii
ENSDARG00000004174	cnot1	100	89.858	ENSGGOG00000009547	CNOT1	100	89.983	Gorilla_gorilla
ENSDARG00000004174	cnot1	100	91.772	ENSHBUG00000001729	cnot1	100	92.107	Haplochromis_burtoni
ENSDARG00000004174	cnot1	100	89.732	ENSHGLG00000014322	CNOT1	100	89.816	Heterocephalus_glaber_female
ENSDARG00000004174	cnot1	100	92.833	ENSHCOG00000006501	cnot1	100	92.878	Hippocampus_comes
ENSDARG00000004174	cnot1	100	92.659	ENSIPUG00000011915	cnot1	100	92.659	Ictalurus_punctatus
ENSDARG00000004174	cnot1	100	89.979	ENSSTOG00000005490	CNOT1	100	90.063	Ictidomys_tridecemlineatus
ENSDARG00000004174	cnot1	100	89.355	ENSJJAG00000000633	Cnot1	100	89.438	Jaculus_jaculus
ENSDARG00000004174	cnot1	100	93.289	ENSKMAG00000006149	cnot1	100	93.414	Kryptolebias_marmoratus
ENSDARG00000004174	cnot1	95	97.804	ENSLBEG00000004740	cnot1	100	97.804	Labrus_bergylta
ENSDARG00000004174	cnot1	100	90.863	ENSLACG00000010869	CNOT1	100	90.654	Latimeria_chalumnae
ENSDARG00000004174	cnot1	100	94.204	ENSLOCG00000006324	cnot1	100	93.868	Lepisosteus_oculatus
ENSDARG00000004174	cnot1	100	89.698	ENSLAFG00000000098	CNOT1	100	89.740	Loxodonta_africana
ENSDARG00000004174	cnot1	100	90.046	ENSMFAG00000035888	CNOT1	100	90.172	Macaca_fascicularis
ENSDARG00000004174	cnot1	100	89.774	ENSMMUG00000014625	CNOT1	94	98.545	Macaca_mulatta
ENSDARG00000004174	cnot1	100	87.338	ENSMNEG00000031820	CNOT1	100	89.633	Macaca_nemestrina
ENSDARG00000004174	cnot1	100	88.466	ENSMLEG00000040933	CNOT1	100	88.592	Mandrillus_leucophaeus
ENSDARG00000004174	cnot1	100	91.471	ENSMAMG00000016524	cnot1	100	91.681	Mastacembelus_armatus
ENSDARG00000004174	cnot1	100	88.553	ENSMZEG00005016210	cnot1	100	88.805	Maylandia_zebra
ENSDARG00000004174	cnot1	100	89.710	ENSMGAG00000001908	CNOT1	100	89.962	Meleagris_gallopavo
ENSDARG00000004174	cnot1	100	89.723	ENSMICG00000007071	CNOT1	100	89.853	Microcebus_murinus
ENSDARG00000004174	cnot1	100	89.774	ENSMOCG00000017969	Cnot1	100	89.816	Microtus_ochrogaster
ENSDARG00000004174	cnot1	100	89.719	ENSMMOG00000019134	cnot1	100	90.013	Mola_mola
ENSDARG00000004174	cnot1	100	89.862	ENSMODG00000014199	CNOT1	100	89.904	Monodelphis_domestica
ENSDARG00000004174	cnot1	100	92.401	ENSMALG00000008645	cnot1	100	92.737	Monopterus_albus
ENSDARG00000004174	cnot1	95	97.143	MGP_CAROLIEiJ_G0031430	Cnot1	92	97.143	Mus_caroli
ENSDARG00000004174	cnot1	100	89.962	ENSMUSG00000036550	Cnot1	100	90.004	Mus_musculus
ENSDARG00000004174	cnot1	100	89.858	MGP_PahariEiJ_G0023028	Cnot1	100	89.899	Mus_pahari
ENSDARG00000004174	cnot1	100	89.816	MGP_SPRETEiJ_G0032549	Cnot1	100	89.858	Mus_spretus
ENSDARG00000004174	cnot1	100	89.858	ENSMPUG00000004830	CNOT1	100	89.899	Mustela_putorius_furo
ENSDARG00000004174	cnot1	100	90.025	ENSMLUG00000003728	CNOT1	100	89.690	Myotis_lucifugus
ENSDARG00000004174	cnot1	100	89.690	ENSNGAG00000018628	Cnot1	100	89.774	Nannospalax_galili
ENSDARG00000004174	cnot1	97	86.144	ENSNBRG00000019358	cnot1	100	86.144	Neolamprologus_brichardi
ENSDARG00000004174	cnot1	100	89.853	ENSNLEG00000003566	CNOT1	100	89.979	Nomascus_leucogenys
ENSDARG00000004174	cnot1	86	90.972	ENSMEUG00000006145	CNOT1	88	90.972	Notamacropus_eugenii
ENSDARG00000004174	cnot1	86	98.058	ENSOPRG00000005604	CNOT1	86	98.058	Ochotona_princeps
ENSDARG00000004174	cnot1	100	89.774	ENSODEG00000016337	CNOT1	100	89.824	Octodon_degus
ENSDARG00000004174	cnot1	100	93.367	ENSONIG00000007358	cnot1	100	93.661	Oreochromis_niloticus
ENSDARG00000004174	cnot1	91	89.286	ENSOANG00000012109	CNOT1	100	89.705	Ornithorhynchus_anatinus
ENSDARG00000004174	cnot1	100	89.858	ENSOCUG00000006911	CNOT1	100	89.899	Oryctolagus_cuniculus
ENSDARG00000004174	cnot1	100	92.621	ENSORLG00000013734	cnot1	100	92.914	Oryzias_latipes
ENSDARG00000004174	cnot1	100	90.886	ENSORLG00020017012	cnot1	100	91.180	Oryzias_latipes_hni
ENSDARG00000004174	cnot1	100	90.802	ENSORLG00015007091	cnot1	100	91.096	Oryzias_latipes_hsok
ENSDARG00000004174	cnot1	100	90.776	ENSOMEG00000015124	cnot1	100	90.566	Oryzias_melastigma
ENSDARG00000004174	cnot1	100	89.858	ENSOGAG00000000543	CNOT1	100	89.816	Otolemur_garnettii
ENSDARG00000004174	cnot1	100	89.899	ENSOARG00000001567	CNOT1	100	89.941	Ovis_aries
ENSDARG00000004174	cnot1	100	89.816	ENSPPAG00000022013	CNOT1	100	89.941	Pan_paniscus
ENSDARG00000004174	cnot1	100	89.858	ENSPPRG00000004867	CNOT1	100	89.899	Panthera_pardus
ENSDARG00000004174	cnot1	100	89.858	ENSPTIG00000012589	CNOT1	100	89.899	Panthera_tigris_altaica
ENSDARG00000004174	cnot1	100	89.553	ENSPTRG00000008183	CNOT1	100	89.678	Pan_troglodytes
ENSDARG00000004174	cnot1	100	86.728	ENSPANG00000020901	CNOT1	100	86.889	Papio_anubis
ENSDARG00000004174	cnot1	100	94.620	ENSPKIG00000023538	CNOT1	100	93.905	Paramormyrops_kingsleyae
ENSDARG00000004174	cnot1	99	87.052	ENSPKIG00000002914	CNOT1	99	86.803	Paramormyrops_kingsleyae
ENSDARG00000004174	cnot1	100	89.983	ENSPSIG00000005499	CNOT1	100	89.983	Pelodiscus_sinensis
ENSDARG00000004174	cnot1	100	79.555	ENSPMAG00000009381	cnot1	100	79.623	Petromyzon_marinus
ENSDARG00000004174	cnot1	95	96.008	ENSPCIG00000007343	CNOT1	100	96.008	Phascolarctos_cinereus
ENSDARG00000004174	cnot1	99	92.803	ENSPFOG00000003497	cnot1	100	92.845	Poecilia_formosa
ENSDARG00000004174	cnot1	95	97.405	ENSPLAG00000014018	cnot1	100	97.405	Poecilia_latipinna
ENSDARG00000004174	cnot1	95	97.405	ENSPMEG00000005868	cnot1	100	97.405	Poecilia_mexicana
ENSDARG00000004174	cnot1	95	97.405	ENSPREG00000018793	cnot1	100	97.405	Poecilia_reticulata
ENSDARG00000004174	cnot1	100	89.858	ENSPPYG00000007410	CNOT1	100	89.983	Pongo_abelii
ENSDARG00000004174	cnot1	87	90.426	ENSPCAG00000003241	CNOT1	88	90.426	Procavia_capensis
ENSDARG00000004174	cnot1	100	89.419	ENSPCOG00000027139	CNOT1	100	89.548	Propithecus_coquereli
ENSDARG00000004174	cnot1	100	87.133	ENSPVAG00000004243	CNOT1	100	87.427	Pteropus_vampyrus
ENSDARG00000004174	cnot1	100	90.378	ENSPNYG00000012919	cnot1	100	90.630	Pundamilia_nyererei
ENSDARG00000004174	cnot1	100	94.068	ENSPNAG00000000246	cnot1	100	94.068	Pygocentrus_nattereri
ENSDARG00000004174	cnot1	100	89.816	ENSRNOG00000012271	Cnot1	100	89.858	Rattus_norvegicus
ENSDARG00000004174	cnot1	100	87.756	ENSRBIG00000044598	CNOT1	100	87.881	Rhinopithecus_bieti
ENSDARG00000004174	cnot1	100	89.816	ENSRROG00000000906	CNOT1	100	89.941	Rhinopithecus_roxellana
ENSDARG00000004174	cnot1	56	30.480	YCR093W	CDC39	68	34.074	Saccharomyces_cerevisiae
ENSDARG00000004174	cnot1	100	85.619	ENSSBOG00000029155	CNOT1	100	85.744	Saimiri_boliviensis_boliviensis
ENSDARG00000004174	cnot1	100	90.159	ENSSHAG00000012187	CNOT1	100	89.782	Sarcophilus_harrisii
ENSDARG00000004174	cnot1	100	92.127	ENSSFOG00015017614	cnot1	100	91.541	Scleropages_formosus
ENSDARG00000004174	cnot1	100	93.488	ENSSMAG00000013844	cnot1	100	93.654	Scophthalmus_maximus
ENSDARG00000004174	cnot1	100	90.730	ENSSDUG00000021491	cnot1	100	91.233	Seriola_dumerili
ENSDARG00000004174	cnot1	100	93.899	ENSSLDG00000014816	cnot1	100	94.275	Seriola_lalandi_dorsalis
ENSDARG00000004174	cnot1	84	97.000	ENSSARG00000000762	CNOT1	88	97.000	Sorex_araneus
ENSDARG00000004174	cnot1	100	92.821	ENSSPAG00000018802	cnot1	100	92.863	Stegastes_partitus
ENSDARG00000004174	cnot1	95	95.808	ENSSSCG00000002799	CNOT1	100	95.808	Sus_scrofa
ENSDARG00000004174	cnot1	100	89.577	ENSTGUG00000005919	CNOT1	100	89.828	Taeniopygia_guttata
ENSDARG00000004174	cnot1	100	91.684	ENSTNIG00000018706	cnot1	100	91.535	Tetraodon_nigroviridis
ENSDARG00000004174	cnot1	80	97.887	ENSTBEG00000000720	CNOT1	80	97.887	Tupaia_belangeri
ENSDARG00000004174	cnot1	95	88.747	ENSTTRG00000008460	CNOT1	95	88.805	Tursiops_truncatus
ENSDARG00000004174	cnot1	100	89.858	ENSUAMG00000009251	CNOT1	100	89.899	Ursus_americanus
ENSDARG00000004174	cnot1	100	89.858	ENSUMAG00000021291	CNOT1	100	89.899	Ursus_maritimus
ENSDARG00000004174	cnot1	97	91.441	ENSVPAG00000008846	CNOT1	97	91.441	Vicugna_pacos
ENSDARG00000004174	cnot1	100	88.810	ENSVVUG00000024037	CNOT1	100	92.644	Vulpes_vulpes
ENSDARG00000004174	cnot1	100	84.828	ENSXETG00000015900	cnot1	100	85.241	Xenopus_tropicalis
ENSDARG00000004174	cnot1	100	91.432	ENSXCOG00000013552	cnot1	100	91.775	Xiphophorus_couchianus
ENSDARG00000004174	cnot1	100	91.474	ENSXMAG00000006031	cnot1	100	91.817	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISS	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0000932	P-body	-	ISS	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	-	ISS	Process
GO:0017148	negative regulation of translation	21873635.	IBA	Process
GO:0030014	CCR4-NOT complex	-	ISS	Component
GO:0030015	CCR4-NOT core complex	-	IEA	Component
GO:0030331	estrogen receptor binding	-	ISS	Function
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0033147	negative regulation of intracellular estrogen receptor signaling pathway	-	ISS	Process
GO:0042974	retinoic acid receptor binding	-	ISS	Function
GO:0048387	negative regulation of retinoic acid receptor signaling pathway	-	ISS	Process
GO:0048589	developmental growth	25533962.	IMP	Process
GO:0060090	molecular adaptor activity	21873635.	IBA	Function
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	-	ISS	Process