EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000004343 (Gene tree)
Gene ID: 436648
Gene Symbol: nelfe
Alias: rdbp|zgc:92496
Full Name: negative elongation factor complex member E
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 10050 bases
Position: chr19:26922780-26932829
Accession: ZDB-GENE-040718-69
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000124298	RRM_1	PF00076.22	9.3e-11	1	1
ENSDARP00000124545	RRM_1	PF00076.22	1.1e-10	1	1
ENSDARP00000150604	RRM_1	PF00076.22	1.1e-10	1	1
ENSDARP00000154852	RRM_1	PF00076.22	1.3e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000149988	-	779	-	ENSDARP00000124636	190 (aa)	-	F8W2R3
ENSDART00000148877	-	1638	XM_021468046	ENSDARP00000124545	346 (aa)	XP_021323721	Q1LWQ2
ENSDART00000187396	-	3119	-	ENSDARP00000154852	394 (aa)	-	A0A2R8QPV7
ENSDART00000148613	-	322	-	ENSDARP00000124025	71 (aa)	-	F8W3U9
ENSDART00000148439	-	1202	-	ENSDARP00000124298	322 (aa)	-	F8W3Z7
ENSDART00000188978	-	2928	XM_005170027	ENSDARP00000150604	346 (aa)	XP_005170084	Q1LWQ2

Gene Model

Click here to download ENSDARG00000004343's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000004343's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000004343	nelfe	100	68.012	ENSG00000204356	NELFE	91	71.034	Homo_sapiens
ENSDARG00000004343	nelfe	76	83.636	ENSAPOG00000008274	nelfe	100	82.022	Acanthochromis_polyacanthus
ENSDARG00000004343	nelfe	76	81.818	ENSAOCG00000017263	nelfe	100	82.222	Amphiprion_ocellaris
ENSDARG00000004343	nelfe	100	82.759	ENSAPEG00000001209	nelfe	100	82.486	Amphiprion_percula
ENSDARG00000004343	nelfe	76	83.636	ENSATEG00000007587	nelfe	90	78.571	Anabas_testudineus
ENSDARG00000004343	nelfe	72	82.353	ENSACLG00000006848	nelfe	99	82.584	Astatotilapia_calliptera
ENSDARG00000004343	nelfe	72	88.235	ENSAMXG00000011495	nelfe	100	79.891	Astyanax_mexicanus
ENSDARG00000004343	nelfe	90	62.759	ENSCPBG00000000225	NELFE	56	65.644	Chrysemys_picta_bellii
ENSDARG00000004343	nelfe	99	64.208	ENSCGRG00001016608	Nelfe	100	64.721	Cricetulus_griseus_chok1gshd
ENSDARG00000004343	nelfe	93	61.714	ENSCGRG00000014034	Nelfe	93	64.140	Cricetulus_griseus_crigri
ENSDARG00000004343	nelfe	76	78.182	ENSCSEG00000011352	nelfe	50	77.515	Cynoglossus_semilaevis
ENSDARG00000004343	nelfe	100	80.460	ENSCVAG00000003087	nelfe	99	80.460	Cyprinodon_variegatus
ENSDARG00000004343	nelfe	99	48.844	ENSEBUG00000017070	nelfe	96	66.242	Eptatretus_burgeri
ENSDARG00000004343	nelfe	61	84.483	ENSEEUG00000005004	NELFE	57	79.012	Erinaceus_europaeus
ENSDARG00000004343	nelfe	100	76.966	ENSELUG00000005830	nelfe	100	71.831	Esox_lucius
ENSDARG00000004343	nelfe	73	82.692	ENSFHEG00000008694	nelfe	100	79.830	Fundulus_heteroclitus
ENSDARG00000004343	nelfe	73	78.846	ENSGAFG00000002349	nelfe	99	70.028	Gambusia_affinis
ENSDARG00000004343	nelfe	99	77.839	ENSGACG00000002935	nelfe	100	77.562	Gasterosteus_aculeatus
ENSDARG00000004343	nelfe	100	82.184	ENSHBUG00000023659	nelfe	99	83.143	Haplochromis_burtoni
ENSDARG00000004343	nelfe	72	82.353	ENSIPUG00000016138	nelfe	100	77.933	Ictalurus_punctatus
ENSDARG00000004343	nelfe	76	78.182	ENSLBEG00000013181	nelfe	99	79.564	Labrus_bergylta
ENSDARG00000004343	nelfe	72	82.353	ENSMZEG00005026412	nelfe	99	82.584	Maylandia_zebra
ENSDARG00000004343	nelfe	73	68.939	ENSMGAG00000001297	NELFE	73	69.841	Meleagris_gallopavo
ENSDARG00000004343	nelfe	100	72.493	ENSMMOG00000014544	nelfe	50	84.118	Mola_mola
ENSDARG00000004343	nelfe	100	57.764	ENSMODG00000015063	NELFE	81	72.993	Monodelphis_domestica
ENSDARG00000004343	nelfe	76	83.636	ENSMALG00000010624	nelfe	93	78.659	Monopterus_albus
ENSDARG00000004343	nelfe	100	78.977	ENSNBRG00000018756	nelfe	99	79.943	Neolamprologus_brichardi
ENSDARG00000004343	nelfe	100	75.575	ENSONIG00000013513	nelfe	99	83.051	Oreochromis_niloticus
ENSDARG00000004343	nelfe	72	66.667	ENSOANG00000009900	-	99	73.171	Ornithorhynchus_anatinus
ENSDARG00000004343	nelfe	73	84.615	ENSORLG00000001948	nelfe	100	77.337	Oryzias_latipes
ENSDARG00000004343	nelfe	73	84.615	ENSORLG00020000791	nelfe	100	77.183	Oryzias_latipes_hni
ENSDARG00000004343	nelfe	73	84.615	ENSORLG00015016824	nelfe	100	77.054	Oryzias_latipes_hsok
ENSDARG00000004343	nelfe	73	82.692	ENSOMEG00000008581	nelfe	100	69.780	Oryzias_melastigma
ENSDARG00000004343	nelfe	100	81.481	ENSPKIG00000012048	nelfe	100	82.336	Paramormyrops_kingsleyae
ENSDARG00000004343	nelfe	79	77.193	ENSPMGG00000019716	nelfe	100	76.190	Periophthalmus_magnuspinnatus
ENSDARG00000004343	nelfe	73	80.769	ENSPFOG00000003019	nelfe	99	79.213	Poecilia_formosa
ENSDARG00000004343	nelfe	73	80.769	ENSPLAG00000018174	nelfe	97	80.563	Poecilia_latipinna
ENSDARG00000004343	nelfe	73	80.769	ENSPMEG00000006918	nelfe	97	78.830	Poecilia_mexicana
ENSDARG00000004343	nelfe	73	80.769	ENSPREG00000002338	nelfe	99	71.831	Poecilia_reticulata
ENSDARG00000004343	nelfe	100	81.897	ENSPNYG00000017837	nelfe	99	82.286	Pundamilia_nyererei
ENSDARG00000004343	nelfe	69	91.837	ENSPNAG00000011802	nelfe	100	78.342	Pygocentrus_nattereri
ENSDARG00000004343	nelfe	72	86.275	ENSSFOG00015017039	nelfe	100	78.591	Scleropages_formosus
ENSDARG00000004343	nelfe	76	81.818	ENSSMAG00000020170	nelfe	100	78.142	Scophthalmus_maximus
ENSDARG00000004343	nelfe	76	83.636	ENSSDUG00000020062	nelfe	100	82.222	Seriola_dumerili
ENSDARG00000004343	nelfe	76	83.636	ENSSLDG00000024412	nelfe	100	79.832	Seriola_lalandi_dorsalis
ENSDARG00000004343	nelfe	76	83.636	ENSSPAG00000012953	nelfe	79	82.022	Stegastes_partitus
ENSDARG00000004343	nelfe	76	81.818	ENSTRUG00000025596	nelfe	84	78.286	Takifugu_rubripes
ENSDARG00000004343	nelfe	76	78.182	ENSTNIG00000019831	nelfe	94	86.538	Tetraodon_nigroviridis
ENSDARG00000004343	nelfe	100	56.684	ENSXETG00000010931	nelfe	70	77.143	Xenopus_tropicalis
ENSDARG00000004343	nelfe	73	80.769	ENSXCOG00000019513	nelfe	99	72.346	Xiphophorus_couchianus
ENSDARG00000004343	nelfe	73	80.769	ENSXMAG00000014078	nelfe	99	79.330	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0032021	NELF complex	-	IEA	Component
GO:1901534	positive regulation of hematopoietic progenitor cell differentiation	27520065.	IMP	Process
GO:1902038	positive regulation of hematopoietic stem cell differentiation	27520065.	IMP	Process