EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000004735 (Gene tree)
Gene ID: 334490
Gene Symbol: hnrnpub
Alias: hnrnpu|hnrpu|wu:fa66f11|wu:fc18b08|wu:fi89c08|zgc:111835|zgc:136480
Full Name: heterogeneous nuclear ribonucleoprotein Ub
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 11843 bases
Position: chr20:35058634-35070476
Accession: ZDB-GENE-030131-6422
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000112099	SAP	PF02037.27	7.1e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000122696	-	4350	-	ENSDARP00000112099	796 (aa)	-	Q5RHQ7
ENSDART00000006954	-	406	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000004735's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000004735's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000004735	hnrnpub	80	46.324	ENSDARG00000079780	hnrnpul1l	70	45.821
ENSDARG00000004735	hnrnpub	75	47.282	ENSDARG00000040564	hnrnpul1	97	43.145
ENSDARG00000004735	hnrnpub	78	35.082	ENSDARG00000056830	si:ch211-107m4.1	60	42.825
ENSDARG00000004735	hnrnpub	100	60.247	ENSDARG00000015206	hnrnpua	100	58.904

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000004735	hnrnpub	90	59.459	ENSG00000153187	HNRNPU	99	68.667	Homo_sapiens
ENSDARG00000004735	hnrnpub	100	60.510	ENSAPOG00000017400	hnrnpub	100	61.389	Acanthochromis_polyacanthus
ENSDARG00000004735	hnrnpub	90	59.459	ENSAMEG00000009145	HNRNPU	78	85.714	Ailuropoda_melanoleuca
ENSDARG00000004735	hnrnpub	100	59.800	ENSACIG00000012138	hnrnpub	97	64.935	Amphilophus_citrinellus
ENSDARG00000004735	hnrnpub	100	60.000	ENSAOCG00000015843	hnrnpub	100	61.491	Amphiprion_ocellaris
ENSDARG00000004735	hnrnpub	100	60.000	ENSAPEG00000014679	hnrnpub	100	61.491	Amphiprion_percula
ENSDARG00000004735	hnrnpub	98	59.634	ENSATEG00000016178	hnrnpub	97	62.179	Anabas_testudineus
ENSDARG00000004735	hnrnpub	87	76.190	ENSACAG00000004511	HNRNPU	80	59.304	Anolis_carolinensis
ENSDARG00000004735	hnrnpub	94	57.663	ENSANAG00000033895	-	80	85.714	Aotus_nancymaae
ENSDARG00000004735	hnrnpub	100	56.647	ENSACLG00000008165	hnrnpub	100	60.749	Astatotilapia_calliptera
ENSDARG00000004735	hnrnpub	90	59.459	ENSBTAG00000007606	HNRNPU	77	85.714	Bos_taurus
ENSDARG00000004735	hnrnpub	90	59.459	ENSCJAG00000016914	HNRNPU	77	85.714	Callithrix_jacchus
ENSDARG00000004735	hnrnpub	90	59.604	ENSCAFG00020000918	HNRNPU	79	85.714	Canis_lupus_dingo
ENSDARG00000004735	hnrnpub	90	59.459	ENSCHIG00000004900	HNRNPU	79	85.714	Capra_hircus
ENSDARG00000004735	hnrnpub	90	59.056	ENSCPOG00000011887	HNRNPU	78	83.333	Cavia_porcellus
ENSDARG00000004735	hnrnpub	94	57.511	ENSCCAG00000037859	-	80	85.714	Cebus_capucinus
ENSDARG00000004735	hnrnpub	86	85.714	ENSCATG00000035273	HNRNPU	80	85.714	Cercocebus_atys
ENSDARG00000004735	hnrnpub	90	59.056	ENSCLAG00000007100	HNRNPU	78	83.333	Chinchilla_lanigera
ENSDARG00000004735	hnrnpub	94	57.663	ENSCSAG00000009219	HNRNPU	79	85.714	Chlorocebus_sabaeus
ENSDARG00000004735	hnrnpub	85	85.714	ENSCHOG00000001387	HNRNPU	76	85.714	Choloepus_hoffmanni
ENSDARG00000004735	hnrnpub	93	62.544	ENSCPBG00000009415	HNRNPU	76	83.333	Chrysemys_picta_bellii
ENSDARG00000004735	hnrnpub	86	85.714	ENSCANG00000022780	HNRNPU	80	85.714	Colobus_angolensis_palliatus
ENSDARG00000004735	hnrnpub	93	59.299	ENSCGRG00001020525	Hnrnpu	83	61.715	Cricetulus_griseus_chok1gshd
ENSDARG00000004735	hnrnpub	83	62.626	ENSCSEG00000010804	hnrnpub	100	57.437	Cynoglossus_semilaevis
ENSDARG00000004735	hnrnpub	94	55.453	ENSCVAG00000004280	hnrnpub	100	55.111	Cyprinodon_variegatus
ENSDARG00000004735	hnrnpub	99	54.670	ENSDNOG00000000215	HNRNPU	87	85.714	Dasypus_novemcinctus
ENSDARG00000004735	hnrnpub	81	58.904	ENSDORG00000015491	Hnrnpu	75	61.538	Dipodomys_ordii
ENSDARG00000004735	hnrnpub	96	58.689	ENSETEG00000014565	HNRNPU	79	85.714	Echinops_telfairi
ENSDARG00000004735	hnrnpub	90	59.604	ENSEASG00005003017	HNRNPU	79	85.714	Equus_asinus_asinus
ENSDARG00000004735	hnrnpub	90	59.604	ENSECAG00000007955	HNRNPU	79	85.714	Equus_caballus
ENSDARG00000004735	hnrnpub	100	59.953	ENSELUG00000010733	hnrnpub	100	60.070	Esox_lucius
ENSDARG00000004735	hnrnpub	70	65.845	ENSELUG00000011966	hnrnpua	97	66.132	Esox_lucius
ENSDARG00000004735	hnrnpub	90	59.459	ENSFCAG00000002156	HNRNPU	79	85.714	Felis_catus
ENSDARG00000004735	hnrnpub	91	61.039	ENSFDAG00000006026	HNRNPU	99	64.706	Fukomys_damarensis
ENSDARG00000004735	hnrnpub	100	58.451	ENSFHEG00000022639	hnrnpub	100	60.335	Fundulus_heteroclitus
ENSDARG00000004735	hnrnpub	100	57.646	ENSGMOG00000001755	hnrnpub	99	58.061	Gadus_morhua
ENSDARG00000004735	hnrnpub	93	62.872	ENSGALG00000010671	HNRNPU	79	61.111	Gallus_gallus
ENSDARG00000004735	hnrnpub	85	60.567	ENSGAFG00000009369	hnrnpub	100	59.117	Gambusia_affinis
ENSDARG00000004735	hnrnpub	88	89.130	ENSGACG00000004679	hnrnpub	83	64.384	Gasterosteus_aculeatus
ENSDARG00000004735	hnrnpub	87	85.714	ENSGGOG00000004061	HNRNPU	80	85.714	Gorilla_gorilla
ENSDARG00000004735	hnrnpub	83	63.930	ENSHBUG00000012290	hnrnpub	100	60.990	Haplochromis_burtoni
ENSDARG00000004735	hnrnpub	90	59.056	ENSHGLG00000010594	-	80	83.333	Heterocephalus_glaber_female
ENSDARG00000004735	hnrnpub	90	83.333	ENSHGLG00100015093	HNRNPU	99	62.500	Heterocephalus_glaber_male
ENSDARG00000004735	hnrnpub	84	60.699	ENSHCOG00000020091	hnrnpub	100	56.032	Hippocampus_comes
ENSDARG00000004735	hnrnpub	81	95.652	ENSIPUG00000007749	hnrnpu	93	95.652	Ictalurus_punctatus
ENSDARG00000004735	hnrnpub	86	81.395	ENSJJAG00000011371	Hnrnpu	81	61.256	Jaculus_jaculus
ENSDARG00000004735	hnrnpub	100	60.454	ENSKMAG00000004532	hnrnpub	100	62.545	Kryptolebias_marmoratus
ENSDARG00000004735	hnrnpub	83	62.213	ENSLBEG00000022520	hnrnpub	100	61.364	Labrus_bergylta
ENSDARG00000004735	hnrnpub	99	47.417	ENSLACG00000017463	HNRNPU	99	48.481	Latimeria_chalumnae
ENSDARG00000004735	hnrnpub	87	89.130	ENSLOCG00000016652	hnrnpua	80	70.076	Lepisosteus_oculatus
ENSDARG00000004735	hnrnpub	96	59.146	ENSLAFG00000021377	HNRNPU	80	85.714	Loxodonta_africana
ENSDARG00000004735	hnrnpub	86	85.714	ENSMFAG00000037308	HNRNPU	80	85.714	Macaca_fascicularis
ENSDARG00000004735	hnrnpub	86	85.714	ENSMMUG00000021098	HNRNPU	80	85.714	Macaca_mulatta
ENSDARG00000004735	hnrnpub	86	85.714	ENSMNEG00000043645	HNRNPU	80	85.714	Macaca_nemestrina
ENSDARG00000004735	hnrnpub	100	58.944	ENSMAMG00000007196	hnrnpub	100	61.224	Mastacembelus_armatus
ENSDARG00000004735	hnrnpub	100	56.766	ENSMZEG00005003185	hnrnpub	100	60.749	Maylandia_zebra
ENSDARG00000004735	hnrnpub	93	59.299	ENSMAUG00000008842	Hnrnpu	83	61.715	Mesocricetus_auratus
ENSDARG00000004735	hnrnpub	96	59.451	ENSMICG00000004616	HNRNPU	80	85.714	Microcebus_murinus
ENSDARG00000004735	hnrnpub	87	81.395	ENSMOCG00000015623	Hnrnpu	82	61.656	Microtus_ochrogaster
ENSDARG00000004735	hnrnpub	94	57.848	ENSMODG00000006515	HNRNPU	85	59.220	Monodelphis_domestica
ENSDARG00000004735	hnrnpub	97	60.723	ENSMALG00000018243	hnrnpub	98	62.121	Monopterus_albus
ENSDARG00000004735	hnrnpub	81	59.299	MGP_CAROLIEiJ_G0014962	Hnrnpu	75	61.715	Mus_caroli
ENSDARG00000004735	hnrnpub	81	59.299	ENSMUSG00000039630	Hnrnpu	75	61.715	Mus_musculus
ENSDARG00000004735	hnrnpub	90	58.994	MGP_PahariEiJ_G0028193	Hnrnpu	82	61.103	Mus_pahari
ENSDARG00000004735	hnrnpub	81	59.299	MGP_SPRETEiJ_G0015761	Hnrnpu	75	61.715	Mus_spretus
ENSDARG00000004735	hnrnpub	90	59.056	ENSMLUG00000000475	HNRNPU	80	83.333	Myotis_lucifugus
ENSDARG00000004735	hnrnpub	99	52.503	ENSNGAG00000019075	Hnrnpu	80	81.395	Nannospalax_galili
ENSDARG00000004735	hnrnpub	83	63.783	ENSNBRG00000017855	hnrnpub	100	60.749	Neolamprologus_brichardi
ENSDARG00000004735	hnrnpub	84	59.895	ENSMEUG00000000541	HNRNPU	77	72.222	Notamacropus_eugenii
ENSDARG00000004735	hnrnpub	100	60.024	ENSONIG00000001260	hnrnpub	100	61.501	Oreochromis_niloticus
ENSDARG00000004735	hnrnpub	89	59.459	ENSOCUG00000014469	HNRNPU	72	85.714	Oryctolagus_cuniculus
ENSDARG00000004735	hnrnpub	100	60.166	ENSORLG00000016114	hnrnpub	100	62.214	Oryzias_latipes
ENSDARG00000004735	hnrnpub	100	60.048	ENSORLG00020005363	hnrnpub	100	62.094	Oryzias_latipes_hni
ENSDARG00000004735	hnrnpub	100	60.723	ENSORLG00015001190	hnrnpub	100	61.928	Oryzias_latipes_hsok
ENSDARG00000004735	hnrnpub	83	61.790	ENSOMEG00000014951	hnrnpub	100	61.585	Oryzias_melastigma
ENSDARG00000004735	hnrnpub	96	59.451	ENSOGAG00000014024	HNRNPU	79	85.714	Otolemur_garnettii
ENSDARG00000004735	hnrnpub	86	85.714	ENSOARG00000004985	HNRNPU	86	85.714	Ovis_aries
ENSDARG00000004735	hnrnpub	90	59.459	ENSPPAG00000038652	HNRNPU	77	85.714	Pan_paniscus
ENSDARG00000004735	hnrnpub	91	59.459	ENSPPRG00000002662	HNRNPU	77	85.714	Panthera_pardus
ENSDARG00000004735	hnrnpub	90	59.459	ENSPTRG00000002182	HNRNPU	78	85.714	Pan_troglodytes
ENSDARG00000004735	hnrnpub	86	85.714	ENSPANG00000011643	HNRNPU	80	85.714	Papio_anubis
ENSDARG00000004735	hnrnpub	100	63.835	ENSPKIG00000006885	hnrnpua	100	63.260	Paramormyrops_kingsleyae
ENSDARG00000004735	hnrnpub	100	65.735	ENSPKIG00000022332	hnrnpub	100	65.128	Paramormyrops_kingsleyae
ENSDARG00000004735	hnrnpub	91	58.841	ENSPCIG00000008657	HNRNPU	78	72.222	Phascolarctos_cinereus
ENSDARG00000004735	hnrnpub	100	58.184	ENSPFOG00000002908	hnrnpub	100	60.796	Poecilia_formosa
ENSDARG00000004735	hnrnpub	100	59.020	ENSPLAG00000004160	hnrnpub	100	60.917	Poecilia_latipinna
ENSDARG00000004735	hnrnpub	93	58.065	ENSPCOG00000003883	-	81	83.333	Propithecus_coquereli
ENSDARG00000004735	hnrnpub	96	59.299	ENSPCOG00000018655	-	79	85.714	Propithecus_coquereli
ENSDARG00000004735	hnrnpub	90	59.459	ENSPVAG00000002581	HNRNPU	77	85.714	Pteropus_vampyrus
ENSDARG00000004735	hnrnpub	83	64.076	ENSPNYG00000021642	hnrnpub	100	60.000	Pundamilia_nyererei
ENSDARG00000004735	hnrnpub	100	67.422	ENSPNAG00000001055	hnrnpub	100	67.600	Pygocentrus_nattereri
ENSDARG00000004735	hnrnpub	90	59.299	ENSRNOG00000033790	Hnrnpu	82	61.810	Rattus_norvegicus
ENSDARG00000004735	hnrnpub	94	56.904	ENSRBIG00000031519	HNRNPU	80	85.714	Rhinopithecus_bieti
ENSDARG00000004735	hnrnpub	94	57.663	ENSRROG00000041642	HNRNPU	79	85.714	Rhinopithecus_roxellana
ENSDARG00000004735	hnrnpub	100	64.946	ENSSFOG00015019004	hnrnpu	99	61.637	Scleropages_formosus
ENSDARG00000004735	hnrnpub	100	65.534	ENSSFOG00015001124	hnrnpub	100	64.606	Scleropages_formosus
ENSDARG00000004735	hnrnpub	84	61.871	ENSSMAG00000003607	hnrnpub	100	59.488	Scophthalmus_maximus
ENSDARG00000004735	hnrnpub	100	57.442	ENSSDUG00000005912	hnrnpub	100	59.790	Seriola_dumerili
ENSDARG00000004735	hnrnpub	100	58.462	ENSSLDG00000004899	hnrnpub	100	61.979	Seriola_lalandi_dorsalis
ENSDARG00000004735	hnrnpub	87	87.500	ENSSPUG00000011393	HNRNPU	99	49.943	Sphenodon_punctatus
ENSDARG00000004735	hnrnpub	83	61.953	ENSSPAG00000011853	hnrnpub	100	61.661	Stegastes_partitus
ENSDARG00000004735	hnrnpub	90	59.459	ENSSSCG00000010877	HNRNPU	79	85.714	Sus_scrofa
ENSDARG00000004735	hnrnpub	100	56.840	ENSTRUG00000007759	hnrnpub	80	63.730	Takifugu_rubripes
ENSDARG00000004735	hnrnpub	99	55.337	ENSUAMG00000021120	HNRNPU	77	85.714	Ursus_americanus
ENSDARG00000004735	hnrnpub	100	52.138	ENSUMAG00000012322	HNRNPU	82	76.744	Ursus_maritimus
ENSDARG00000004735	hnrnpub	83	59.459	ENSVPAG00000010520	HNRNPU	81	85.714	Vicugna_pacos
ENSDARG00000004735	hnrnpub	90	59.604	ENSVVUG00000026524	HNRNPU	79	85.714	Vulpes_vulpes
ENSDARG00000004735	hnrnpub	99	50.000	ENSXETG00000011386	hnrnpu	80	82.222	Xenopus_tropicalis
ENSDARG00000004735	hnrnpub	100	57.688	ENSXMAG00000010356	hnrnpub	100	59.521	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0019012	virion	-	IEA	Component
GO:0019013	viral nucleocapsid	-	IEA	Component