EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000004956 (Gene tree)
Gene ID: 324476
Gene Symbol: zmat2
Alias: fc30d10|flj31121|wu:fc30d10
Full Name: zinc finger%2C matrin-type 2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6486 bases
Position: chr21:30293564-30300049
Accession: ZDB-GENE-030131-3197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000002108	zf-U1	PF06220.12	0.00048	1	1
ENSDARP00000002108	zf-met	PF12874.7	4.6e-06	1	1
ENSDARP00000002108	zf-C2H2_jaz	PF12171.8	1.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000007412	-	1196	-	ENSDARP00000002108	198 (aa)	-	Q6TLH9

Gene Model

Click here to download ENSDARG00000004956's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000004956's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000004956	zmat2	100	90.955	ENSG00000146007	ZMAT2	100	98.113	Homo_sapiens
ENSDARG00000004956	zmat2	100	90.547	ENSAPOG00000004818	zmat2	100	90.547	Acanthochromis_polyacanthus
ENSDARG00000004956	zmat2	100	90.955	ENSAMEG00000010766	ZMAT2	100	90.955	Ailuropoda_melanoleuca
ENSDARG00000004956	zmat2	99	90.355	ENSACIG00000007914	zmat2	99	90.355	Amphilophus_citrinellus
ENSDARG00000004956	zmat2	100	90.547	ENSAOCG00000016267	zmat2	100	90.547	Amphiprion_ocellaris
ENSDARG00000004956	zmat2	100	90.547	ENSAPEG00000008887	zmat2	100	90.547	Amphiprion_percula
ENSDARG00000004956	zmat2	100	90.547	ENSATEG00000009724	zmat2	100	90.547	Anabas_testudineus
ENSDARG00000004956	zmat2	100	90.955	ENSACAG00000012747	ZMAT2	100	90.955	Anolis_carolinensis
ENSDARG00000004956	zmat2	100	90.955	ENSANAG00000028921	ZMAT2	100	90.955	Aotus_nancymaae
ENSDARG00000004956	zmat2	100	90.050	ENSACLG00000001243	zmat2	100	90.050	Astatotilapia_calliptera
ENSDARG00000004956	zmat2	100	90.050	ENSACLG00000000982	zmat2	100	90.050	Astatotilapia_calliptera
ENSDARG00000004956	zmat2	65	78.030	ENSACLG00000015635	-	93	77.863	Astatotilapia_calliptera
ENSDARG00000004956	zmat2	100	95.960	ENSAMXG00000042537	zmat2	100	95.960	Astyanax_mexicanus
ENSDARG00000004956	zmat2	100	90.955	ENSBTAG00000005441	ZMAT2	100	90.955	Bos_taurus
ENSDARG00000004956	zmat2	100	89.447	ENSCJAG00000021456	-	100	89.447	Callithrix_jacchus
ENSDARG00000004956	zmat2	100	90.955	ENSCJAG00000016231	-	100	90.955	Callithrix_jacchus
ENSDARG00000004956	zmat2	100	90.955	ENSCAFG00000005907	ZMAT2	100	90.955	Canis_familiaris
ENSDARG00000004956	zmat2	100	90.955	ENSCAFG00020000423	ZMAT2	100	90.955	Canis_lupus_dingo
ENSDARG00000004956	zmat2	95	91.534	ENSCHIG00000014775	ZMAT2	95	91.534	Capra_hircus
ENSDARG00000004956	zmat2	100	90.955	ENSTSYG00000035442	-	100	90.955	Carlito_syrichta
ENSDARG00000004956	zmat2	100	73.869	ENSTSYG00000032797	-	100	73.869	Carlito_syrichta
ENSDARG00000004956	zmat2	100	90.452	ENSCPOG00000037729	ZMAT2	100	90.452	Cavia_porcellus
ENSDARG00000004956	zmat2	100	90.955	ENSCCAG00000024723	ZMAT2	100	90.955	Cebus_capucinus
ENSDARG00000004956	zmat2	100	90.955	ENSCLAG00000017314	ZMAT2	100	90.955	Chinchilla_lanigera
ENSDARG00000004956	zmat2	100	90.955	ENSCSAG00000012639	ZMAT2	100	90.955	Chlorocebus_sabaeus
ENSDARG00000004956	zmat2	78	83.974	ENSCHOG00000007795	ZMAT2	100	83.333	Choloepus_hoffmanni
ENSDARG00000004956	zmat2	100	90.955	ENSCPBG00000007718	ZMAT2	100	90.955	Chrysemys_picta_bellii
ENSDARG00000004956	zmat2	54	64.151	ENSCING00000016227	-	97	64.151	Ciona_intestinalis
ENSDARG00000004956	zmat2	75	69.737	ENSCSAVG00000008239	-	94	66.316	Ciona_savignyi
ENSDARG00000004956	zmat2	100	90.955	ENSCANG00000039567	ZMAT2	100	90.955	Colobus_angolensis_palliatus
ENSDARG00000004956	zmat2	100	90.955	ENSCGRG00001023749	Zmat2	100	90.955	Cricetulus_griseus_chok1gshd
ENSDARG00000004956	zmat2	100	90.955	ENSCGRG00000013756	Zmat2	100	90.955	Cricetulus_griseus_crigri
ENSDARG00000004956	zmat2	100	88.557	ENSCSEG00000006694	zmat2	91	88.557	Cynoglossus_semilaevis
ENSDARG00000004956	zmat2	100	91.045	ENSCVAG00000003489	zmat2	100	91.045	Cyprinodon_variegatus
ENSDARG00000004956	zmat2	62	91.870	ENSDNOG00000015171	ZMAT2	100	91.870	Dasypus_novemcinctus
ENSDARG00000004956	zmat2	100	68.844	ENSDORG00000014559	Zmat2	100	68.844	Dipodomys_ordii
ENSDARG00000004956	zmat2	95	60.733	FBgn0035520	CG11586	96	61.257	Drosophila_melanogaster
ENSDARG00000004956	zmat2	100	87.940	ENSETEG00000005406	-	100	87.940	Echinops_telfairi
ENSDARG00000004956	zmat2	58	73.913	ENSEBUG00000015463	-	70	70.866	Eptatretus_burgeri
ENSDARG00000004956	zmat2	100	90.955	ENSEASG00005018047	ZMAT2	100	90.955	Equus_asinus_asinus
ENSDARG00000004956	zmat2	100	90.955	ENSECAG00000014412	ZMAT2	100	90.955	Equus_caballus
ENSDARG00000004956	zmat2	76	92.763	ENSEEUG00000007861	ZMAT2	100	92.763	Erinaceus_europaeus
ENSDARG00000004956	zmat2	97	93.782	ENSELUG00000021857	zmat2	99	92.157	Esox_lucius
ENSDARG00000004956	zmat2	100	90.955	ENSFCAG00000001289	ZMAT2	100	90.955	Felis_catus
ENSDARG00000004956	zmat2	100	82.412	ENSFALG00000014244	-	100	82.412	Ficedula_albicollis
ENSDARG00000004956	zmat2	98	89.744	ENSFALG00000008988	-	98	89.744	Ficedula_albicollis
ENSDARG00000004956	zmat2	100	90.955	ENSFDAG00000008372	ZMAT2	100	90.955	Fukomys_damarensis
ENSDARG00000004956	zmat2	100	90.050	ENSFHEG00000016999	zmat2	100	90.050	Fundulus_heteroclitus
ENSDARG00000004956	zmat2	76	91.613	ENSGMOG00000003032	zmat2	100	91.613	Gadus_morhua
ENSDARG00000004956	zmat2	100	90.452	ENSGALG00000041746	ZMAT2	100	90.452	Gallus_gallus
ENSDARG00000004956	zmat2	100	90.050	ENSGAFG00000009807	zmat2	100	90.050	Gambusia_affinis
ENSDARG00000004956	zmat2	100	90.050	ENSGACG00000020892	zmat2	100	90.050	Gasterosteus_aculeatus
ENSDARG00000004956	zmat2	100	89.950	ENSGAGG00000008849	ZMAT2	100	89.950	Gopherus_agassizii
ENSDARG00000004956	zmat2	100	90.955	ENSGGOG00000005121	ZMAT2	100	90.955	Gorilla_gorilla
ENSDARG00000004956	zmat2	100	79.208	ENSHBUG00000019195	zmat2	100	79.208	Haplochromis_burtoni
ENSDARG00000004956	zmat2	75	80.263	ENSHBUG00000021068	-	91	78.453	Haplochromis_burtoni
ENSDARG00000004956	zmat2	97	86.598	ENSHBUG00000021112	-	93	86.598	Haplochromis_burtoni
ENSDARG00000004956	zmat2	100	90.955	ENSHGLG00000008187	-	100	90.955	Heterocephalus_glaber_female
ENSDARG00000004956	zmat2	100	90.955	ENSHGLG00100002997	-	100	90.955	Heterocephalus_glaber_male
ENSDARG00000004956	zmat2	100	91.542	ENSHCOG00000002199	zmat2	90	91.542	Hippocampus_comes
ENSDARG00000004956	zmat2	100	96.970	ENSIPUG00000024080	Zmat2	100	96.970	Ictalurus_punctatus
ENSDARG00000004956	zmat2	100	90.955	ENSSTOG00000002025	ZMAT2	100	90.955	Ictidomys_tridecemlineatus
ENSDARG00000004956	zmat2	100	90.955	ENSJJAG00000003703	-	100	90.955	Jaculus_jaculus
ENSDARG00000004956	zmat2	100	90.050	ENSKMAG00000005411	zmat2	100	90.050	Kryptolebias_marmoratus
ENSDARG00000004956	zmat2	100	89.552	ENSLBEG00000002013	zmat2	100	89.552	Labrus_bergylta
ENSDARG00000004956	zmat2	100	89.447	ENSLACG00000001030	ZMAT2	100	89.447	Latimeria_chalumnae
ENSDARG00000004956	zmat2	100	94.949	ENSLOCG00000011219	zmat2	85	94.949	Lepisosteus_oculatus
ENSDARG00000004956	zmat2	100	90.955	ENSLAFG00000018601	ZMAT2	100	90.955	Loxodonta_africana
ENSDARG00000004956	zmat2	100	90.955	ENSMFAG00000037329	ZMAT2	100	90.955	Macaca_fascicularis
ENSDARG00000004956	zmat2	100	90.955	ENSMMUG00000004484	ZMAT2	100	90.955	Macaca_mulatta
ENSDARG00000004956	zmat2	100	90.955	ENSMNEG00000031600	ZMAT2	100	90.955	Macaca_nemestrina
ENSDARG00000004956	zmat2	100	90.955	ENSMLEG00000041320	ZMAT2	100	90.955	Mandrillus_leucophaeus
ENSDARG00000004956	zmat2	100	90.547	ENSMAMG00000022430	zmat2	100	90.547	Mastacembelus_armatus
ENSDARG00000004956	zmat2	100	88.060	ENSMZEG00005001274	-	100	88.060	Maylandia_zebra
ENSDARG00000004956	zmat2	100	90.050	ENSMZEG00005027828	zmat2	100	90.050	Maylandia_zebra
ENSDARG00000004956	zmat2	99	89.394	ENSMGAG00000000843	ZMAT2	99	89.394	Meleagris_gallopavo
ENSDARG00000004956	zmat2	100	67.488	ENSMAUG00000016579	Zmat2	100	64.039	Mesocricetus_auratus
ENSDARG00000004956	zmat2	100	90.955	ENSMICG00000042843	ZMAT2	100	90.955	Microcebus_murinus
ENSDARG00000004956	zmat2	100	85.930	ENSMOCG00000012659	Zmat2	100	85.930	Microtus_ochrogaster
ENSDARG00000004956	zmat2	100	90.050	ENSMMOG00000016831	zmat2	100	90.050	Mola_mola
ENSDARG00000004956	zmat2	100	89.950	ENSMODG00000011277	-	100	89.950	Monodelphis_domestica
ENSDARG00000004956	zmat2	100	90.452	ENSMODG00000011269	-	100	90.452	Monodelphis_domestica
ENSDARG00000004956	zmat2	99	90.955	ENSMALG00000009668	zmat2	99	90.955	Monopterus_albus
ENSDARG00000004956	zmat2	100	90.955	MGP_CAROLIEiJ_G0022140	Zmat2	100	90.955	Mus_caroli
ENSDARG00000004956	zmat2	100	90.955	ENSMUSG00000001383	Zmat2	100	90.955	Mus_musculus
ENSDARG00000004956	zmat2	100	90.955	MGP_PahariEiJ_G0018874	Zmat2	100	90.955	Mus_pahari
ENSDARG00000004956	zmat2	100	90.955	MGP_SPRETEiJ_G0023052	Zmat2	100	90.955	Mus_spretus
ENSDARG00000004956	zmat2	100	90.955	ENSMPUG00000008383	ZMAT2	100	90.955	Mustela_putorius_furo
ENSDARG00000004956	zmat2	100	90.955	ENSMLUG00000017525	ZMAT2	100	90.955	Myotis_lucifugus
ENSDARG00000004956	zmat2	100	91.457	ENSNGAG00000009406	Zmat2	100	91.457	Nannospalax_galili
ENSDARG00000004956	zmat2	100	90.050	ENSNBRG00000017902	zmat2	100	90.050	Neolamprologus_brichardi
ENSDARG00000004956	zmat2	86	64.912	ENSNLEG00000009450	-	95	63.743	Nomascus_leucogenys
ENSDARG00000004956	zmat2	76	92.105	ENSMEUG00000001757	ZMAT2	100	92.105	Notamacropus_eugenii
ENSDARG00000004956	zmat2	100	90.955	ENSODEG00000002444	ZMAT2	100	90.955	Octodon_degus
ENSDARG00000004956	zmat2	100	89.109	ENSONIG00000017873	zmat2	100	89.109	Oreochromis_niloticus
ENSDARG00000004956	zmat2	87	91.279	ENSOANG00000007213	ZMAT2	100	91.279	Ornithorhynchus_anatinus
ENSDARG00000004956	zmat2	100	90.955	ENSOCUG00000004255	ZMAT2	100	90.955	Oryctolagus_cuniculus
ENSDARG00000004956	zmat2	100	92.040	ENSORLG00000024293	zmat2	100	92.040	Oryzias_latipes
ENSDARG00000004956	zmat2	100	92.040	ENSORLG00020003239	zmat2	100	92.040	Oryzias_latipes_hni
ENSDARG00000004956	zmat2	100	91.542	ENSORLG00015007715	zmat2	100	91.542	Oryzias_latipes_hsok
ENSDARG00000004956	zmat2	100	90.547	ENSOMEG00000017427	zmat2	93	90.547	Oryzias_melastigma
ENSDARG00000004956	zmat2	100	90.955	ENSOGAG00000002054	ZMAT2	100	90.955	Otolemur_garnettii
ENSDARG00000004956	zmat2	100	90.955	ENSOARG00000018690	ZMAT2	100	90.955	Ovis_aries
ENSDARG00000004956	zmat2	100	90.955	ENSPPAG00000034165	ZMAT2	100	90.955	Pan_paniscus
ENSDARG00000004956	zmat2	100	90.955	ENSPPRG00000004163	ZMAT2	100	90.955	Panthera_pardus
ENSDARG00000004956	zmat2	100	90.955	ENSPTIG00000008652	ZMAT2	100	90.955	Panthera_tigris_altaica
ENSDARG00000004956	zmat2	100	90.955	ENSPTRG00000017327	ZMAT2	100	90.955	Pan_troglodytes
ENSDARG00000004956	zmat2	100	82.915	ENSPANG00000032021	ZMAT2	100	82.915	Papio_anubis
ENSDARG00000004956	zmat2	100	95.960	ENSPKIG00000017778	zmat2	100	95.960	Paramormyrops_kingsleyae
ENSDARG00000004956	zmat2	62	91.870	ENSPSIG00000003832	ZMAT2	100	91.870	Pelodiscus_sinensis
ENSDARG00000004956	zmat2	100	87.437	ENSPMGG00000005845	zmat2	100	87.437	Periophthalmus_magnuspinnatus
ENSDARG00000004956	zmat2	100	90.955	ENSPEMG00000010300	Zmat2	100	90.955	Peromyscus_maniculatus_bairdii
ENSDARG00000004956	zmat2	100	90.452	ENSPCIG00000021080	ZMAT2	100	90.452	Phascolarctos_cinereus
ENSDARG00000004956	zmat2	100	90.547	ENSPFOG00000002482	zmat2	100	90.547	Poecilia_formosa
ENSDARG00000004956	zmat2	100	91.045	ENSPLAG00000019239	zmat2	100	91.045	Poecilia_latipinna
ENSDARG00000004956	zmat2	100	90.547	ENSPMEG00000024343	zmat2	100	90.547	Poecilia_mexicana
ENSDARG00000004956	zmat2	52	90.476	ENSPREG00000001359	zmat2	51	90.476	Poecilia_reticulata
ENSDARG00000004956	zmat2	100	90.955	ENSPPYG00000015866	ZMAT2	100	90.955	Pongo_abelii
ENSDARG00000004956	zmat2	100	90.955	ENSPCAG00000001604	ZMAT2	100	90.955	Procavia_capensis
ENSDARG00000004956	zmat2	100	90.955	ENSPCOG00000020829	ZMAT2	100	90.955	Propithecus_coquereli
ENSDARG00000004956	zmat2	100	90.955	ENSPVAG00000009717	ZMAT2	100	90.955	Pteropus_vampyrus
ENSDARG00000004956	zmat2	100	90.050	ENSPNYG00000022503	zmat2	100	90.050	Pundamilia_nyererei
ENSDARG00000004956	zmat2	100	94.444	ENSPNAG00000013716	zmat2	100	94.444	Pygocentrus_nattereri
ENSDARG00000004956	zmat2	100	90.452	ENSRNOG00000016016	Zmat2	100	90.452	Rattus_norvegicus
ENSDARG00000004956	zmat2	100	90.955	ENSRBIG00000031072	ZMAT2	100	90.955	Rhinopithecus_bieti
ENSDARG00000004956	zmat2	100	90.955	ENSRROG00000032700	ZMAT2	100	90.955	Rhinopithecus_roxellana
ENSDARG00000004956	zmat2	100	90.955	ENSSBOG00000025911	ZMAT2	100	90.955	Saimiri_boliviensis_boliviensis
ENSDARG00000004956	zmat2	100	90.452	ENSSHAG00000016524	ZMAT2	100	90.452	Sarcophilus_harrisii
ENSDARG00000004956	zmat2	100	95.960	ENSSFOG00015022982	zmat2	100	95.960	Scleropages_formosus
ENSDARG00000004956	zmat2	100	91.045	ENSSMAG00000011152	zmat2	100	91.045	Scophthalmus_maximus
ENSDARG00000004956	zmat2	100	91.045	ENSSDUG00000023365	zmat2	100	91.045	Seriola_dumerili
ENSDARG00000004956	zmat2	100	91.045	ENSSLDG00000008752	zmat2	100	91.045	Seriola_lalandi_dorsalis
ENSDARG00000004956	zmat2	100	90.955	ENSSARG00000005898	ZMAT2	100	90.955	Sorex_araneus
ENSDARG00000004956	zmat2	100	90.452	ENSSPUG00000000256	ZMAT2	100	90.452	Sphenodon_punctatus
ENSDARG00000004956	zmat2	100	90.547	ENSSPAG00000011593	zmat2	100	90.547	Stegastes_partitus
ENSDARG00000004956	zmat2	100	90.955	ENSSSCG00000029158	ZMAT2	100	90.955	Sus_scrofa
ENSDARG00000004956	zmat2	100	88.442	ENSTGUG00000001696	ZMAT2	100	88.442	Taeniopygia_guttata
ENSDARG00000004956	zmat2	100	90.547	ENSTRUG00000008262	zmat2	100	90.547	Takifugu_rubripes
ENSDARG00000004956	zmat2	100	89.552	ENSTNIG00000007599	zmat2	100	89.552	Tetraodon_nigroviridis
ENSDARG00000004956	zmat2	100	67.839	ENSTTRG00000001777	ZMAT2	100	67.839	Tursiops_truncatus
ENSDARG00000004956	zmat2	75	89.933	ENSUAMG00000004654	ZMAT2	78	89.933	Ursus_americanus
ENSDARG00000004956	zmat2	100	90.955	ENSUMAG00000012852	ZMAT2	100	90.955	Ursus_maritimus
ENSDARG00000004956	zmat2	59	92.308	ENSVPAG00000002463	ZMAT2	59	92.308	Vicugna_pacos
ENSDARG00000004956	zmat2	100	90.955	ENSVVUG00000017308	ZMAT2	100	90.955	Vulpes_vulpes
ENSDARG00000004956	zmat2	100	75.377	ENSXETG00000016118	zmat2	100	75.377	Xenopus_tropicalis
ENSDARG00000004956	zmat2	100	89.500	ENSXMAG00000024441	zmat2	100	89.500	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function