EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000005049 (Gene tree)
Gene ID: 337199
Gene Symbol: rab20
Alias: fb01f02|wu:fb01f02|wu:fj82g08|zgc:64047
Full Name: RAB20%2C member RAS oncogene family
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 7716 bases
Position: chr9:8887528-8895243
Accession: ZDB-GENE-030131-9143
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000122604	MMR_HSR1	PF01926.23	7.6e-05	1	1
ENSDARP00000115943	MMR_HSR1	PF01926.23	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000138527	-	1372	-	ENSDARP00000122604	242 (aa)	-	F1QVA7
ENSDART00000144673	-	838	-	ENSDARP00000115943	99 (aa)	-	E9QIW7

Gene Model

Click here to download ENSDARG00000005049's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000005049's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000005049	rab20	78	32.381	ENSDARG00000007257	rab5ab	97	32.381
ENSDARG00000005049	rab20	51	33.588	ENSDARG00000036501	rab39bb	61	33.588
ENSDARG00000005049	rab20	73	41.558	ENSDARG00000074246	rab14	54	38.793
ENSDARG00000005049	rab20	96	30.612	ENSDARG00000087243	zgc:100918	95	30.612
ENSDARG00000005049	rab20	54	36.029	ENSDARG00000102078	CABZ01072548.1	67	36.029
ENSDARG00000005049	rab20	82	31.731	ENSDARG00000021287	rab7b	81	31.731
ENSDARG00000005049	rab20	73	41.558	ENSDARG00000035188	rab14l	54	38.793
ENSDARG00000005049	rab20	95	32.510	ENSDARG00000052954	rab25b	93	32.510
ENSDARG00000005049	rab20	55	40.678	ENSDARG00000015807	rab22a	61	40.000
ENSDARG00000005049	rab20	53	40.351	ENSDARG00000014058	rab36	52	33.333
ENSDARG00000005049	rab20	52	40.152	ENSDARG00000018602	rab5aa	61	40.152
ENSDARG00000005049	rab20	84	30.769	ENSDARG00000089428	rab12	69	31.707
ENSDARG00000005049	rab20	53	36.842	ENSDARG00000045628	rab34a	50	36.585

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000005049	rab20	97	73.047	ENSATEG00000011117	rab20	99	73.047	Anabas_testudineus
ENSDARG00000005049	rab20	97	67.511	ENSAPLG00000011744	RAB20	99	67.511	Anas_platyrhynchos
ENSDARG00000005049	rab20	96	64.103	ENSACAG00000014045	RAB20	99	64.103	Anolis_carolinensis
ENSDARG00000005049	rab20	97	74.390	ENSAMXG00000003504	rab20	99	75.918	Astyanax_mexicanus
ENSDARG00000005049	rab20	97	68.644	ENSCPBG00000005866	RAB20	99	68.644	Chrysemys_picta_bellii
ENSDARG00000005049	rab20	97	77.311	ENSCSEG00000011160	rab20	99	77.311	Cynoglossus_semilaevis
ENSDARG00000005049	rab20	99	71.374	ENSELUG00000004092	rab20	100	71.374	Esox_lucius
ENSDARG00000005049	rab20	97	66.949	ENSFALG00000004409	RAB20	99	66.949	Ficedula_albicollis
ENSDARG00000005049	rab20	97	74.902	ENSGACG00000003527	rab20	99	74.902	Gasterosteus_aculeatus
ENSDARG00000005049	rab20	99	71.538	ENSHCOG00000013468	rab20	100	71.538	Hippocampus_comes
ENSDARG00000005049	rab20	100	77.049	ENSIPUG00000000432	RAB20	100	77.049	Ictalurus_punctatus
ENSDARG00000005049	rab20	100	77.049	ENSIPUG00000018288	RAB20	100	77.049	Ictalurus_punctatus
ENSDARG00000005049	rab20	98	67.635	ENSLACG00000011001	RAB20	99	67.635	Latimeria_chalumnae
ENSDARG00000005049	rab20	99	73.585	ENSMAMG00000015214	rab20	100	73.585	Mastacembelus_armatus
ENSDARG00000005049	rab20	97	75.104	ENSMMOG00000020022	rab20	99	75.104	Mola_mola
ENSDARG00000005049	rab20	97	63.136	ENSMEUG00000009442	RAB20	99	63.136	Notamacropus_eugenii
ENSDARG00000005049	rab20	85	52.093	ENSPMAG00000004439	rab20	99	52.558	Petromyzon_marinus
ENSDARG00000005049	rab20	97	78.243	ENSPNAG00000008867	rab20	99	79.253	Pygocentrus_nattereri
ENSDARG00000005049	rab20	97	72.047	ENSSMAG00000018818	rab20	99	72.047	Scophthalmus_maximus
ENSDARG00000005049	rab20	99	73.764	ENSSDUG00000005148	rab20	100	73.764	Seriola_dumerili
ENSDARG00000005049	rab20	97	67.511	ENSTGUG00000008797	RAB20	99	67.511	Taeniopygia_guttata
ENSDARG00000005049	rab20	99	69.549	ENSTRUG00000022951	rab20	100	69.549	Takifugu_rubripes
ENSDARG00000005049	rab20	91	75.000	ENSTNIG00000013920	rab20	99	71.967	Tetraodon_nigroviridis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005768	endosome	21873635.	IBA	Component
GO:0005769	early endosome	21873635.	IBA	Component
GO:0005886	plasma membrane	21873635.	IBA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006897	endocytosis	21873635.	IBA	Process
GO:0030100	regulation of endocytosis	21873635.	IBA	Process
GO:0030139	endocytic vesicle	21873635.	IBA	Component
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process