EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000005128 (Gene tree)
Gene ID: 393241
Gene Symbol: rnaseh2b
Alias: zgc:56602
Full Name: ribonuclease H2%2C subunit B
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 7620 bases
Position: chr9:29671553-29679172
Accession: ZDB-GENE-040426-1090
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000006173	RNase_H2-Ydr279	PF09468.10	1.2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000123160	-	531	-	-	- (aa)	-	-
ENSDART00000015377	-	1042	XM_021478630	ENSDARP00000006173	306 (aa)	XP_021334305	F1QN47
ENSDART00000145042	-	520	-	ENSDARP00000121023	82 (aa)	-	F1R3U5

Gene Model

Click here to download ENSDARG00000005128's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03030	DNA replication	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000005128's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000005128	rnaseh2b	93	49.655	ENSG00000136104	RNASEH2B	96	57.303	Homo_sapiens
ENSDARG00000005128	rnaseh2b	99	70.588	ENSAPOG00000010496	rnaseh2b	99	70.588	Acanthochromis_polyacanthus
ENSDARG00000005128	rnaseh2b	91	50.877	ENSAMEG00000012040	RNASEH2B	96	50.877	Ailuropoda_melanoleuca
ENSDARG00000005128	rnaseh2b	99	60.984	ENSACIG00000021991	rnaseh2b	97	67.172	Amphilophus_citrinellus
ENSDARG00000005128	rnaseh2b	99	70.915	ENSAOCG00000013398	rnaseh2b	99	70.915	Amphiprion_ocellaris
ENSDARG00000005128	rnaseh2b	99	70.588	ENSAPEG00000006033	rnaseh2b	99	70.588	Amphiprion_percula
ENSDARG00000005128	rnaseh2b	99	71.242	ENSATEG00000008370	rnaseh2b	99	71.242	Anabas_testudineus
ENSDARG00000005128	rnaseh2b	83	61.328	ENSAPLG00000008955	RNASEH2B	99	61.255	Anas_platyrhynchos
ENSDARG00000005128	rnaseh2b	93	54.325	ENSACAG00000011679	RNASEH2B	97	54.325	Anolis_carolinensis
ENSDARG00000005128	rnaseh2b	94	50.000	ENSANAG00000020662	RNASEH2B	94	50.000	Aotus_nancymaae
ENSDARG00000005128	rnaseh2b	99	71.569	ENSACLG00000000467	rnaseh2b	99	71.569	Astatotilapia_calliptera
ENSDARG00000005128	rnaseh2b	100	76.221	ENSAMXG00000014351	rnaseh2b	100	76.221	Astyanax_mexicanus
ENSDARG00000005128	rnaseh2b	93	49.135	ENSBTAG00000020149	RNASEH2B	93	49.135	Bos_taurus
ENSDARG00000005128	rnaseh2b	75	45.726	ENSCJAG00000003822	-	86	45.726	Callithrix_jacchus
ENSDARG00000005128	rnaseh2b	93	49.827	ENSCJAG00000008585	-	95	49.827	Callithrix_jacchus
ENSDARG00000005128	rnaseh2b	91	50.178	ENSCAFG00000004295	RNASEH2B	92	50.178	Canis_familiaris
ENSDARG00000005128	rnaseh2b	94	48.621	ENSCAFG00020000250	RNASEH2B	95	49.655	Canis_lupus_dingo
ENSDARG00000005128	rnaseh2b	75	47.863	ENSCHIG00000012982	-	82	47.863	Capra_hircus
ENSDARG00000005128	rnaseh2b	96	47.811	ENSCHIG00000018220	RNASEH2B	97	47.811	Capra_hircus
ENSDARG00000005128	rnaseh2b	91	50.178	ENSTSYG00000009176	-	91	50.178	Carlito_syrichta
ENSDARG00000005128	rnaseh2b	93	43.357	ENSTSYG00000031177	-	94	43.357	Carlito_syrichta
ENSDARG00000005128	rnaseh2b	91	44.840	ENSCAPG00000009978	RNASEH2B	95	45.196	Cavia_aperea
ENSDARG00000005128	rnaseh2b	94	48.454	ENSCPOG00000032527	RNASEH2B	94	48.454	Cavia_porcellus
ENSDARG00000005128	rnaseh2b	94	50.000	ENSCCAG00000026979	RNASEH2B	95	50.174	Cebus_capucinus
ENSDARG00000005128	rnaseh2b	90	50.360	ENSCATG00000031336	RNASEH2B	78	50.360	Cercocebus_atys
ENSDARG00000005128	rnaseh2b	91	50.714	ENSCLAG00000003517	RNASEH2B	77	50.714	Chinchilla_lanigera
ENSDARG00000005128	rnaseh2b	92	49.650	ENSCSAG00000017701	RNASEH2B	87	49.650	Chlorocebus_sabaeus
ENSDARG00000005128	rnaseh2b	95	43.098	ENSCHOG00000013688	RNASEH2B	95	43.771	Choloepus_hoffmanni
ENSDARG00000005128	rnaseh2b	99	56.169	ENSCPBG00000008684	RNASEH2B	95	56.169	Chrysemys_picta_bellii
ENSDARG00000005128	rnaseh2b	94	35.548	ENSCING00000016454	-	96	35.548	Ciona_intestinalis
ENSDARG00000005128	rnaseh2b	94	49.488	ENSCANG00000041511	-	94	49.488	Colobus_angolensis_palliatus
ENSDARG00000005128	rnaseh2b	94	50.865	ENSCGRG00001000611	Rnaseh2b	94	51.211	Cricetulus_griseus_chok1gshd
ENSDARG00000005128	rnaseh2b	94	50.865	ENSCGRG00000006077	Rnaseh2b	94	51.211	Cricetulus_griseus_crigri
ENSDARG00000005128	rnaseh2b	99	71.475	ENSCSEG00000004910	rnaseh2b	99	71.475	Cynoglossus_semilaevis
ENSDARG00000005128	rnaseh2b	99	69.281	ENSCVAG00000005212	rnaseh2b	99	69.281	Cyprinodon_variegatus
ENSDARG00000005128	rnaseh2b	97	47.525	ENSDNOG00000049666	-	98	47.525	Dasypus_novemcinctus
ENSDARG00000005128	rnaseh2b	98	44.408	ENSDNOG00000034290	-	98	44.408	Dasypus_novemcinctus
ENSDARG00000005128	rnaseh2b	99	49.180	ENSDORG00000010708	Rnaseh2b	99	49.180	Dipodomys_ordii
ENSDARG00000005128	rnaseh2b	88	30.693	FBgn0030507	CG11164	88	30.693	Drosophila_melanogaster
ENSDARG00000005128	rnaseh2b	84	41.085	ENSEBUG00000005965	rnaseh2b	98	41.085	Eptatretus_burgeri
ENSDARG00000005128	rnaseh2b	94	51.546	ENSEASG00005017323	RNASEH2B	93	51.546	Equus_asinus_asinus
ENSDARG00000005128	rnaseh2b	94	51.890	ENSECAG00000014262	RNASEH2B	93	51.890	Equus_caballus
ENSDARG00000005128	rnaseh2b	99	69.935	ENSELUG00000019560	rnaseh2b	99	69.935	Esox_lucius
ENSDARG00000005128	rnaseh2b	90	48.561	ENSFCAG00000014257	RNASEH2B	87	48.561	Felis_catus
ENSDARG00000005128	rnaseh2b	93	60.279	ENSFALG00000008435	RNASEH2B	97	60.279	Ficedula_albicollis
ENSDARG00000005128	rnaseh2b	91	49.822	ENSFDAG00000009920	RNASEH2B	98	49.822	Fukomys_damarensis
ENSDARG00000005128	rnaseh2b	99	71.242	ENSFHEG00000012160	rnaseh2b	99	71.242	Fundulus_heteroclitus
ENSDARG00000005128	rnaseh2b	99	61.218	ENSGMOG00000016830	rnaseh2b	99	61.218	Gadus_morhua
ENSDARG00000005128	rnaseh2b	95	57.338	ENSGALG00000017015	RNASEH2B	100	57.468	Gallus_gallus
ENSDARG00000005128	rnaseh2b	99	66.993	ENSGAFG00000021222	rnaseh2b	99	66.993	Gambusia_affinis
ENSDARG00000005128	rnaseh2b	99	66.346	ENSGACG00000002821	rnaseh2b	99	66.346	Gasterosteus_aculeatus
ENSDARG00000005128	rnaseh2b	90	59.206	ENSGAGG00000014722	RNASEH2B	99	59.206	Gopherus_agassizii
ENSDARG00000005128	rnaseh2b	94	49.488	ENSGGOG00000001044	RNASEH2B	94	49.488	Gorilla_gorilla
ENSDARG00000005128	rnaseh2b	99	72.222	ENSHBUG00000006049	rnaseh2b	99	72.222	Haplochromis_burtoni
ENSDARG00000005128	rnaseh2b	91	50.890	ENSHGLG00100015953	RNASEH2B	96	50.890	Heterocephalus_glaber_male
ENSDARG00000005128	rnaseh2b	99	65.584	ENSHCOG00000003318	rnaseh2b	99	65.584	Hippocampus_comes
ENSDARG00000005128	rnaseh2b	99	77.705	ENSIPUG00000023815	rnaseh2b	99	77.705	Ictalurus_punctatus
ENSDARG00000005128	rnaseh2b	90	52.347	ENSSTOG00000015126	RNASEH2B	95	52.347	Ictidomys_tridecemlineatus
ENSDARG00000005128	rnaseh2b	87	51.673	ENSJJAG00000013335	Rnaseh2b	91	51.673	Jaculus_jaculus
ENSDARG00000005128	rnaseh2b	99	70.915	ENSKMAG00000002198	rnaseh2b	99	70.915	Kryptolebias_marmoratus
ENSDARG00000005128	rnaseh2b	99	70.820	ENSLBEG00000019331	rnaseh2b	99	70.820	Labrus_bergylta
ENSDARG00000005128	rnaseh2b	68	62.736	ENSLACG00000010782	RNASEH2B	91	62.555	Latimeria_chalumnae
ENSDARG00000005128	rnaseh2b	99	66.667	ENSLOCG00000009296	rnaseh2b	99	66.667	Lepisosteus_oculatus
ENSDARG00000005128	rnaseh2b	91	49.822	ENSLAFG00000030158	RNASEH2B	91	49.822	Loxodonta_africana
ENSDARG00000005128	rnaseh2b	94	50.173	ENSMFAG00000038464	-	93	50.173	Macaca_fascicularis
ENSDARG00000005128	rnaseh2b	94	46.181	ENSMMUG00000021746	RNASEH2B	92	46.181	Macaca_mulatta
ENSDARG00000005128	rnaseh2b	94	50.173	ENSMNEG00000030580	RNASEH2B	93	50.173	Macaca_nemestrina
ENSDARG00000005128	rnaseh2b	94	49.658	ENSMLEG00000043911	-	93	49.658	Mandrillus_leucophaeus
ENSDARG00000005128	rnaseh2b	99	71.242	ENSMAMG00000017109	rnaseh2b	99	71.242	Mastacembelus_armatus
ENSDARG00000005128	rnaseh2b	99	68.301	ENSMZEG00005021926	rnaseh2b	99	68.954	Maylandia_zebra
ENSDARG00000005128	rnaseh2b	88	58.608	ENSMGAG00000015025	RNASEH2B	100	58.681	Meleagris_gallopavo
ENSDARG00000005128	rnaseh2b	94	49.481	ENSMAUG00000016520	Rnaseh2b	94	50.173	Mesocricetus_auratus
ENSDARG00000005128	rnaseh2b	94	49.135	ENSMICG00000000528	RNASEH2B	94	49.135	Microcebus_murinus
ENSDARG00000005128	rnaseh2b	99	66.885	ENSMMOG00000019799	rnaseh2b	99	71.579	Mola_mola
ENSDARG00000005128	rnaseh2b	98	54.125	ENSMODG00000010775	RNASEH2B	99	54.125	Monodelphis_domestica
ENSDARG00000005128	rnaseh2b	99	70.588	ENSMALG00000004463	rnaseh2b	100	70.588	Monopterus_albus
ENSDARG00000005128	rnaseh2b	72	54.955	MGP_CAROLIEiJ_G0019389	Rnaseh2b	82	56.306	Mus_caroli
ENSDARG00000005128	rnaseh2b	87	53.137	ENSMUSG00000021932	Rnaseh2b	87	53.137	Mus_musculus
ENSDARG00000005128	rnaseh2b	87	41.905	MGP_PahariEiJ_G0030407	-	89	42.492	Mus_pahari
ENSDARG00000005128	rnaseh2b	72	47.727	ENSMPUG00000018010	RNASEH2B	92	47.727	Mustela_putorius_furo
ENSDARG00000005128	rnaseh2b	94	52.560	ENSMLUG00000004065	-	94	52.560	Myotis_lucifugus
ENSDARG00000005128	rnaseh2b	99	71.569	ENSNBRG00000003253	rnaseh2b	99	71.569	Neolamprologus_brichardi
ENSDARG00000005128	rnaseh2b	94	49.488	ENSNLEG00000003804	RNASEH2B	94	49.488	Nomascus_leucogenys
ENSDARG00000005128	rnaseh2b	92	54.704	ENSMEUG00000003665	RNASEH2B	98	54.704	Notamacropus_eugenii
ENSDARG00000005128	rnaseh2b	52	53.086	ENSOPRG00000003695	-	51	55.556	Ochotona_princeps
ENSDARG00000005128	rnaseh2b	75	48.052	ENSODEG00000005412	-	91	48.052	Octodon_degus
ENSDARG00000005128	rnaseh2b	94	51.379	ENSODEG00000006793	-	94	51.379	Octodon_degus
ENSDARG00000005128	rnaseh2b	99	71.569	ENSONIG00000006657	rnaseh2b	99	71.569	Oreochromis_niloticus
ENSDARG00000005128	rnaseh2b	92	55.326	ENSOANG00000015537	RNASEH2B	100	55.326	Ornithorhynchus_anatinus
ENSDARG00000005128	rnaseh2b	94	49.141	ENSOCUG00000008904	RNASEH2B	91	50.172	Oryctolagus_cuniculus
ENSDARG00000005128	rnaseh2b	99	68.647	ENSORLG00000011850	rnaseh2b	100	68.647	Oryzias_latipes
ENSDARG00000005128	rnaseh2b	99	68.977	ENSORLG00020012081	rnaseh2b	100	68.977	Oryzias_latipes_hni
ENSDARG00000005128	rnaseh2b	99	69.307	ENSORLG00015015468	rnaseh2b	100	69.307	Oryzias_latipes_hsok
ENSDARG00000005128	rnaseh2b	99	69.967	ENSOMEG00000012441	rnaseh2b	100	69.967	Oryzias_melastigma
ENSDARG00000005128	rnaseh2b	94	49.147	ENSOGAG00000016486	RNASEH2B	98	49.147	Otolemur_garnettii
ENSDARG00000005128	rnaseh2b	92	49.645	ENSOARG00000008701	RNASEH2B	95	49.645	Ovis_aries
ENSDARG00000005128	rnaseh2b	88	52.015	ENSPPAG00000026374	RNASEH2B	93	49.057	Pan_paniscus
ENSDARG00000005128	rnaseh2b	94	47.619	ENSPPRG00000012450	RNASEH2B	96	47.619	Panthera_pardus
ENSDARG00000005128	rnaseh2b	88	50.000	ENSPTIG00000013918	RNASEH2B	98	50.000	Panthera_tigris_altaica
ENSDARG00000005128	rnaseh2b	94	49.488	ENSPTRG00000005886	RNASEH2B	95	53.785	Pan_troglodytes
ENSDARG00000005128	rnaseh2b	94	49.658	ENSPANG00000022424	-	93	49.658	Papio_anubis
ENSDARG00000005128	rnaseh2b	99	67.541	ENSPKIG00000013386	rnaseh2b	99	67.541	Paramormyrops_kingsleyae
ENSDARG00000005128	rnaseh2b	59	53.297	ENSPSIG00000002224	RNASEH2B	85	53.297	Pelodiscus_sinensis
ENSDARG00000005128	rnaseh2b	66	69.307	ENSPMGG00000010299	rnaseh2b	98	69.307	Periophthalmus_magnuspinnatus
ENSDARG00000005128	rnaseh2b	94	51.557	ENSPEMG00000019721	Rnaseh2b	94	52.234	Peromyscus_maniculatus_bairdii
ENSDARG00000005128	rnaseh2b	93	54.007	ENSPCIG00000014535	-	96	54.007	Phascolarctos_cinereus
ENSDARG00000005128	rnaseh2b	99	69.156	ENSPFOG00000016722	rnaseh2b	99	69.156	Poecilia_formosa
ENSDARG00000005128	rnaseh2b	99	69.281	ENSPLAG00000011755	rnaseh2b	99	69.281	Poecilia_latipinna
ENSDARG00000005128	rnaseh2b	99	69.608	ENSPMEG00000002721	rnaseh2b	99	69.608	Poecilia_mexicana
ENSDARG00000005128	rnaseh2b	99	69.281	ENSPREG00000007737	rnaseh2b	99	69.281	Poecilia_reticulata
ENSDARG00000005128	rnaseh2b	94	49.488	ENSPPYG00000005378	RNASEH2B	94	49.488	Pongo_abelii
ENSDARG00000005128	rnaseh2b	94	50.000	ENSPCOG00000026623	RNASEH2B	94	50.000	Propithecus_coquereli
ENSDARG00000005128	rnaseh2b	79	51.012	ENSPVAG00000000508	RNASEH2B	92	51.012	Pteropus_vampyrus
ENSDARG00000005128	rnaseh2b	99	71.895	ENSPNYG00000013552	rnaseh2b	99	71.895	Pundamilia_nyererei
ENSDARG00000005128	rnaseh2b	100	76.547	ENSPNAG00000024825	rnaseh2b	100	76.547	Pygocentrus_nattereri
ENSDARG00000005128	rnaseh2b	94	51.203	ENSRNOG00000009192	Rnaseh2b	94	51.203	Rattus_norvegicus
ENSDARG00000005128	rnaseh2b	94	49.655	ENSRBIG00000028928	-	94	49.655	Rhinopithecus_bieti
ENSDARG00000005128	rnaseh2b	91	46.071	ENSRBIG00000036017	-	92	46.071	Rhinopithecus_bieti
ENSDARG00000005128	rnaseh2b	94	49.655	ENSRROG00000018808	-	94	49.655	Rhinopithecus_roxellana
ENSDARG00000005128	rnaseh2b	73	40.807	ENSRROG00000044915	-	85	40.807	Rhinopithecus_roxellana
ENSDARG00000005128	rnaseh2b	94	49.827	ENSSBOG00000008081	RNASEH2B	96	52.222	Saimiri_boliviensis_boliviensis
ENSDARG00000005128	rnaseh2b	99	56.536	ENSSHAG00000016190	RNASEH2B	100	56.494	Sarcophilus_harrisii
ENSDARG00000005128	rnaseh2b	99	70.588	ENSSFOG00015010190	rnaseh2b	100	70.588	Scleropages_formosus
ENSDARG00000005128	rnaseh2b	99	71.475	ENSSMAG00000001546	rnaseh2b	99	71.475	Scophthalmus_maximus
ENSDARG00000005128	rnaseh2b	99	72.222	ENSSDUG00000007567	rnaseh2b	99	72.222	Seriola_dumerili
ENSDARG00000005128	rnaseh2b	99	70.261	ENSSLDG00000012485	rnaseh2b	99	70.261	Seriola_lalandi_dorsalis
ENSDARG00000005128	rnaseh2b	85	52.852	ENSSPUG00000006745	-	95	52.852	Sphenodon_punctatus
ENSDARG00000005128	rnaseh2b	99	71.242	ENSSPAG00000020926	rnaseh2b	99	71.242	Stegastes_partitus
ENSDARG00000005128	rnaseh2b	87	52.985	ENSSSCG00000024385	RNASEH2B	95	54.286	Sus_scrofa
ENSDARG00000005128	rnaseh2b	88	61.255	ENSTGUG00000012104	RNASEH2B	99	61.255	Taeniopygia_guttata
ENSDARG00000005128	rnaseh2b	100	71.010	ENSTRUG00000015098	rnaseh2b	100	71.010	Takifugu_rubripes
ENSDARG00000005128	rnaseh2b	99	69.481	ENSTNIG00000013861	rnaseh2b	99	69.481	Tetraodon_nigroviridis
ENSDARG00000005128	rnaseh2b	90	44.286	ENSTTRG00000010761	RNASEH2B	91	45.390	Tursiops_truncatus
ENSDARG00000005128	rnaseh2b	91	51.429	ENSUAMG00000022849	RNASEH2B	96	52.788	Ursus_americanus
ENSDARG00000005128	rnaseh2b	91	50.714	ENSUMAG00000018556	RNASEH2B	96	52.045	Ursus_maritimus
ENSDARG00000005128	rnaseh2b	90	51.429	ENSVPAG00000005679	RNASEH2B	96	51.429	Vicugna_pacos
ENSDARG00000005128	rnaseh2b	91	50.890	ENSVVUG00000024015	RNASEH2B	84	51.957	Vulpes_vulpes
ENSDARG00000005128	rnaseh2b	99	55.844	ENSXETG00000020720	rnaseh2b	100	55.844	Xenopus_tropicalis
ENSDARG00000005128	rnaseh2b	99	66.993	ENSXCOG00000018732	rnaseh2b	99	66.993	Xiphophorus_couchianus
ENSDARG00000005128	rnaseh2b	99	68.301	ENSXMAG00000022554	rnaseh2b	99	68.301	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0004523	RNA-DNA hybrid ribonuclease activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0009259	ribonucleotide metabolic process	21873635.	IBA	Process
GO:0032299	ribonuclease H2 complex	21873635.	IBA	Component
GO:0032299	ribonuclease H2 complex	-	IEA	Component