EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000005315 (Gene tree)
Gene ID: 58137
Gene Symbol: celf1
Alias: Bruno-like|brul|cb920|cugbp1
Full Name: cugbp%2C Elav-like family member 1
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 35007 bases
Position: chr7:38535934-38570940
Accession: ZDB-GENE-000501-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000115192	RRM_1	PF00076.22	1.6e-50	1	3
ENSDARP00000115192	RRM_1	PF00076.22	1.6e-50	2	3
ENSDARP00000115192	RRM_1	PF00076.22	1.6e-50	3	3
ENSDARP00000041054	RRM_1	PF00076.22	1.6e-47	1	3
ENSDARP00000041054	RRM_1	PF00076.22	1.6e-47	2	3
ENSDARP00000041054	RRM_1	PF00076.22	1.6e-47	3	3
ENSDARP00000120872	RRM_1	PF00076.22	2.4e-31	1	2
ENSDARP00000120872	RRM_1	PF00076.22	2.4e-31	2	2
ENSDARP00000121897	RRM_1	PF00076.22	3.9e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000143815	-	779	-	ENSDARP00000120872	169 (aa)	-	E9QIE8
ENSDART00000134570	-	3709	XM_009303336	ENSDARP00000115192	501 (aa)	XP_009301611	Q9IBD0
ENSDART00000139187	-	827	-	ENSDARP00000121897	228 (aa)	-	E9QEH4
ENSDART00000041055	-	2778	XM_005168991	ENSDARP00000041054	534 (aa)	XP_005169048	Q9IBD0

Gene Model

Click here to download ENSDARG00000005315's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000005315's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000005315	celf1	51	39.474	ENSDARG00000044574	rbms3	92	37.079
ENSDARG00000005315	celf1	91	60.938	ENSDARG00000090727	celf5b	66	60.317
ENSDARG00000005315	celf1	98	31.579	ENSDARG00000014420	elavl3	78	42.553
ENSDARG00000005315	celf1	58	31.507	ENSDARG00000001241	puf60b	68	35.714
ENSDARG00000005315	celf1	91	59.375	ENSDARG00000006983	celf3b	99	43.354
ENSDARG00000005315	celf1	63	33.333	ENSDARG00000045639	elavl4	73	33.333
ENSDARG00000005315	celf1	58	35.227	ENSDARG00000021140	pabpc1b	53	35.227
ENSDARG00000005315	celf1	97	38.983	ENSDARG00000026723	syncripl	63	38.983
ENSDARG00000005315	celf1	57	43.210	ENSDARG00000101744	elavl1b	82	39.796
ENSDARG00000005315	celf1	93	56.329	ENSDARG00000070045	celf4	100	43.675
ENSDARG00000005315	celf1	99	30.588	ENSDARG00000038695	elavl1a	81	44.444
ENSDARG00000005315	celf1	100	54.286	ENSDARG00000071375	celf5a	65	65.116
ENSDARG00000005315	celf1	99	50.000	ENSDARG00000098702	zgc:165603	61	50.000
ENSDARG00000005315	celf1	82	33.803	ENSDARG00000059351	hnrnpa3	59	33.803
ENSDARG00000005315	celf1	93	53.165	ENSDARG00000034668	celf3a	70	61.029
ENSDARG00000005315	celf1	100	85.207	ENSDARG00000002131	celf2	99	73.684
ENSDARG00000005315	celf1	51	40.789	ENSDARG00000074023	rbms1a	50	38.235
ENSDARG00000005315	celf1	56	40.741	ENSDARG00000040732	elavl2	73	40.741

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000005315	celf1	100	88.757	ENSG00000149187	CELF1	100	89.474	Homo_sapiens
ENSDARG00000005315	celf1	100	96.450	ENSAPOG00000024000	celf1	100	92.216	Acanthochromis_polyacanthus
ENSDARG00000005315	celf1	100	88.757	ENSAMEG00000007596	CELF1	95	83.202	Ailuropoda_melanoleuca
ENSDARG00000005315	celf1	100	97.041	ENSACIG00000023843	celf1	100	86.117	Amphilophus_citrinellus
ENSDARG00000005315	celf1	100	96.450	ENSAOCG00000001252	celf1	100	92.216	Amphiprion_ocellaris
ENSDARG00000005315	celf1	100	96.450	ENSAPEG00000002340	celf1	97	92.415	Amphiprion_percula
ENSDARG00000005315	celf1	100	94.083	ENSATEG00000010871	celf1	100	83.099	Anabas_testudineus
ENSDARG00000005315	celf1	100	89.941	ENSACAG00000002114	CELF1	95	83.037	Anolis_carolinensis
ENSDARG00000005315	celf1	100	88.757	ENSANAG00000031770	CELF1	95	82.772	Aotus_nancymaae
ENSDARG00000005315	celf1	100	97.041	ENSACLG00000010181	-	100	85.513	Astatotilapia_calliptera
ENSDARG00000005315	celf1	100	95.858	ENSAMXG00000020576	celf1	100	94.019	Astyanax_mexicanus
ENSDARG00000005315	celf1	100	88.757	ENSBTAG00000002520	CELF1	100	83.004	Bos_taurus
ENSDARG00000005315	celf1	100	88.757	ENSCJAG00000020133	CELF1	95	83.960	Callithrix_jacchus
ENSDARG00000005315	celf1	100	88.757	ENSCAFG00000008452	CELF1	95	83.004	Canis_familiaris
ENSDARG00000005315	celf1	100	88.757	ENSCAFG00020025487	CELF1	100	79.648	Canis_lupus_dingo
ENSDARG00000005315	celf1	100	88.757	ENSCHIG00000024582	CELF1	95	83.597	Capra_hircus
ENSDARG00000005315	celf1	100	88.757	ENSTSYG00000003866	CELF1	100	82.772	Carlito_syrichta
ENSDARG00000005315	celf1	100	72.034	ENSCAPG00000006787	CELF1	89	67.640	Cavia_aperea
ENSDARG00000005315	celf1	100	88.757	ENSCPOG00000036381	CELF1	100	84.158	Cavia_porcellus
ENSDARG00000005315	celf1	100	88.757	ENSCCAG00000033487	CELF1	100	82.772	Cebus_capucinus
ENSDARG00000005315	celf1	100	88.757	ENSCATG00000040143	CELF1	100	83.960	Cercocebus_atys
ENSDARG00000005315	celf1	100	88.757	ENSCLAG00000011791	CELF1	100	80.198	Chinchilla_lanigera
ENSDARG00000005315	celf1	100	88.757	ENSCSAG00000005786	CELF1	95	82.970	Chlorocebus_sabaeus
ENSDARG00000005315	celf1	100	88.757	ENSCHOG00000004196	-	68	97.872	Choloepus_hoffmanni
ENSDARG00000005315	celf1	100	88.757	ENSCPBG00000022914	CELF1	100	83.629	Chrysemys_picta_bellii
ENSDARG00000005315	celf1	100	88.757	ENSCANG00000032689	CELF1	100	83.633	Colobus_angolensis_palliatus
ENSDARG00000005315	celf1	100	88.166	ENSCGRG00001011274	Celf1	95	82.376	Cricetulus_griseus_chok1gshd
ENSDARG00000005315	celf1	100	88.166	ENSCGRG00000015357	Celf1	95	82.376	Cricetulus_griseus_crigri
ENSDARG00000005315	celf1	100	93.491	ENSCSEG00000008675	celf1	100	75.299	Cynoglossus_semilaevis
ENSDARG00000005315	celf1	100	88.757	ENSDNOG00000009523	CELF1	100	83.960	Dasypus_novemcinctus
ENSDARG00000005315	celf1	100	88.757	ENSDORG00000013721	Celf1	96	75.050	Dipodomys_ordii
ENSDARG00000005315	celf1	74	93.023	ENSETEG00000004507	CELF1	83	93.023	Echinops_telfairi
ENSDARG00000005315	celf1	100	77.624	ENSEASG00005010831	CELF1	95	76.378	Equus_asinus_asinus
ENSDARG00000005315	celf1	100	88.757	ENSECAG00000007741	CELF1	100	82.669	Equus_caballus
ENSDARG00000005315	celf1	100	89.865	ENSEEUG00000009782	CELF1	100	67.723	Erinaceus_europaeus
ENSDARG00000005315	celf1	100	95.609	ENSELUG00000023173	celf1	100	95.372	Esox_lucius
ENSDARG00000005315	celf1	100	88.757	ENSFCAG00000002535	CELF1	100	83.004	Felis_catus
ENSDARG00000005315	celf1	100	88.757	ENSFALG00000006402	CELF1	95	84.585	Ficedula_albicollis
ENSDARG00000005315	celf1	100	88.757	ENSFDAG00000008517	CELF1	100	83.960	Fukomys_damarensis
ENSDARG00000005315	celf1	100	94.675	ENSGMOG00000012783	celf1	100	88.976	Gadus_morhua
ENSDARG00000005315	celf1	100	89.349	ENSGALG00000008097	CELF1	100	84.692	Gallus_gallus
ENSDARG00000005315	celf1	100	95.266	ENSGACG00000014226	celf1	99	82.397	Gasterosteus_aculeatus
ENSDARG00000005315	celf1	100	88.757	ENSGAGG00000011562	CELF1	100	83.333	Gopherus_agassizii
ENSDARG00000005315	celf1	100	88.757	ENSGGOG00000004106	CELF1	95	83.960	Gorilla_gorilla
ENSDARG00000005315	celf1	100	97.041	ENSHBUG00000017881	celf1	95	89.222	Haplochromis_burtoni
ENSDARG00000005315	celf1	100	86.391	ENSHGLG00000019214	-	100	77.092	Heterocephalus_glaber_female
ENSDARG00000005315	celf1	100	88.757	ENSHGLG00000006909	-	100	83.762	Heterocephalus_glaber_female
ENSDARG00000005315	celf1	100	86.982	ENSHGLG00100017423	-	100	78.486	Heterocephalus_glaber_male
ENSDARG00000005315	celf1	100	88.757	ENSHGLG00100013863	-	100	83.762	Heterocephalus_glaber_male
ENSDARG00000005315	celf1	100	95.266	ENSHCOG00000000258	celf1	100	87.052	Hippocampus_comes
ENSDARG00000005315	celf1	100	95.266	ENSIPUG00000023708	celf1	100	94.165	Ictalurus_punctatus
ENSDARG00000005315	celf1	100	88.757	ENSSTOG00000000613	CELF1	100	83.960	Ictidomys_tridecemlineatus
ENSDARG00000005315	celf1	100	89.349	ENSJJAG00000020280	Celf1	95	83.168	Jaculus_jaculus
ENSDARG00000005315	celf1	73	86.471	ENSLBEG00000002047	-	98	87.252	Labrus_bergylta
ENSDARG00000005315	celf1	100	95.858	ENSLBEG00000018296	celf1	100	83.942	Labrus_bergylta
ENSDARG00000005315	celf1	100	70.782	ENSLACG00000018990	CELF1	86	73.816	Latimeria_chalumnae
ENSDARG00000005315	celf1	100	95.858	ENSLOCG00000005966	celf1	95	93.638	Lepisosteus_oculatus
ENSDARG00000005315	celf1	100	88.757	ENSLAFG00000003484	CELF1	97	82.330	Loxodonta_africana
ENSDARG00000005315	celf1	100	88.757	ENSMFAG00000003505	CELF1	100	83.960	Macaca_fascicularis
ENSDARG00000005315	celf1	100	88.757	ENSMMUG00000011657	CELF1	99	83.698	Macaca_mulatta
ENSDARG00000005315	celf1	100	88.757	ENSMNEG00000022558	CELF1	100	83.960	Macaca_nemestrina
ENSDARG00000005315	celf1	100	88.757	ENSMLEG00000040834	CELF1	100	83.633	Mandrillus_leucophaeus
ENSDARG00000005315	celf1	100	97.041	ENSMAMG00000010052	celf1	100	86.117	Mastacembelus_armatus
ENSDARG00000005315	celf1	100	97.041	ENSMZEG00005018307	celf1	100	85.513	Maylandia_zebra
ENSDARG00000005315	celf1	100	89.349	ENSMGAG00000010629	CELF1	97	84.783	Meleagris_gallopavo
ENSDARG00000005315	celf1	100	88.166	ENSMAUG00000009468	Celf1	100	83.564	Mesocricetus_auratus
ENSDARG00000005315	celf1	100	88.757	ENSMICG00000045113	CELF1	95	83.960	Microcebus_murinus
ENSDARG00000005315	celf1	100	88.166	ENSMOCG00000012633	Celf1	100	83.762	Microtus_ochrogaster
ENSDARG00000005315	celf1	100	95.858	ENSMMOG00000015460	celf1	100	85.393	Mola_mola
ENSDARG00000005315	celf1	100	89.941	ENSMODG00000019913	CELF1	100	83.762	Monodelphis_domestica
ENSDARG00000005315	celf1	100	88.166	MGP_CAROLIEiJ_G0023949	Celf1	100	83.762	Mus_caroli
ENSDARG00000005315	celf1	100	88.166	ENSMUSG00000005506	Celf1	100	83.762	Mus_musculus
ENSDARG00000005315	celf1	100	88.166	MGP_PahariEiJ_G0025385	Celf1	100	83.762	Mus_pahari
ENSDARG00000005315	celf1	100	88.166	MGP_SPRETEiJ_G0024859	Celf1	100	82.574	Mus_spretus
ENSDARG00000005315	celf1	100	88.757	ENSMPUG00000003960	CELF1	89	82.122	Mustela_putorius_furo
ENSDARG00000005315	celf1	100	88.166	ENSMLUG00000016631	CELF1	95	83.465	Myotis_lucifugus
ENSDARG00000005315	celf1	100	84.615	ENSNGAG00000017390	Celf1	95	80.990	Nannospalax_galili
ENSDARG00000005315	celf1	97	72.455	ENSNBRG00000023547	-	85	58.918	Neolamprologus_brichardi
ENSDARG00000005315	celf1	100	88.757	ENSNLEG00000014638	CELF1	100	83.633	Nomascus_leucogenys
ENSDARG00000005315	celf1	100	89.349	ENSMEUG00000007763	CELF1	100	83.960	Notamacropus_eugenii
ENSDARG00000005315	celf1	100	86.982	ENSOPRG00000003239	-	100	82.376	Ochotona_princeps
ENSDARG00000005315	celf1	100	88.757	ENSODEG00000015204	CELF1	95	82.772	Octodon_degus
ENSDARG00000005315	celf1	100	97.041	ENSONIG00000008300	celf1	95	88.845	Oreochromis_niloticus
ENSDARG00000005315	celf1	100	88.757	ENSOANG00000007896	CELF1	95	84.055	Ornithorhynchus_anatinus
ENSDARG00000005315	celf1	100	88.757	ENSOCUG00000001311	CELF1	95	83.168	Oryctolagus_cuniculus
ENSDARG00000005315	celf1	100	92.899	ENSOMEG00000002381	celf1	100	81.511	Oryzias_melastigma
ENSDARG00000005315	celf1	100	88.757	ENSOGAG00000011600	CELF1	95	83.661	Otolemur_garnettii
ENSDARG00000005315	celf1	100	88.757	ENSOARG00000006924	CELF1	100	83.597	Ovis_aries
ENSDARG00000005315	celf1	100	88.757	ENSPPAG00000033870	CELF1	100	83.960	Pan_paniscus
ENSDARG00000005315	celf1	100	88.757	ENSPPRG00000002376	CELF1	100	83.004	Panthera_pardus
ENSDARG00000005315	celf1	100	88.757	ENSPTIG00000003974	CELF1	100	83.004	Panthera_tigris_altaica
ENSDARG00000005315	celf1	100	88.757	ENSPTRG00000052299	CELF1	100	83.960	Pan_troglodytes
ENSDARG00000005315	celf1	100	88.757	ENSPANG00000021676	CELF1	95	83.960	Papio_anubis
ENSDARG00000005315	celf1	100	94.298	ENSPKIG00000012324	celf1	100	90.744	Paramormyrops_kingsleyae
ENSDARG00000005315	celf1	100	86.391	ENSPSIG00000003922	CELF1	95	80.980	Pelodiscus_sinensis
ENSDARG00000005315	celf1	100	94.675	ENSPMGG00000013192	celf1	94	86.508	Periophthalmus_magnuspinnatus
ENSDARG00000005315	celf1	100	88.166	ENSPEMG00000015644	Celf1	100	83.762	Peromyscus_maniculatus_bairdii
ENSDARG00000005315	celf1	100	89.349	ENSPCIG00000022947	CELF1	99	82.012	Phascolarctos_cinereus
ENSDARG00000005315	celf1	88	89.888	ENSPFOG00000007187	-	83	89.888	Poecilia_formosa
ENSDARG00000005315	celf1	70	72.472	ENSPFOG00000000961	-	99	73.219	Poecilia_formosa
ENSDARG00000005315	celf1	97	95.122	ENSPLAG00000019373	-	71	91.304	Poecilia_latipinna
ENSDARG00000005315	celf1	100	92.308	ENSPREG00000022185	-	94	76.938	Poecilia_reticulata
ENSDARG00000005315	celf1	100	88.757	ENSPPYG00000003302	CELF1	95	82.213	Pongo_abelii
ENSDARG00000005315	celf1	100	85.799	ENSPCAG00000002631	CELF1	100	82.178	Procavia_capensis
ENSDARG00000005315	celf1	100	82.203	ENSPCOG00000021865	CELF1	95	80.000	Propithecus_coquereli
ENSDARG00000005315	celf1	97	88.991	ENSPVAG00000007340	CELF1	100	82.287	Pteropus_vampyrus
ENSDARG00000005315	celf1	97	98.182	ENSPNYG00000023719	-	88	71.955	Pundamilia_nyererei
ENSDARG00000005315	celf1	100	95.266	ENSPNAG00000013418	celf1	100	94.579	Pygocentrus_nattereri
ENSDARG00000005315	celf1	100	88.166	ENSRNOG00000010379	Celf1	100	83.564	Rattus_norvegicus
ENSDARG00000005315	celf1	100	88.757	ENSRBIG00000042406	CELF1	95	83.960	Rhinopithecus_bieti
ENSDARG00000005315	celf1	100	88.757	ENSRROG00000032588	CELF1	95	82.772	Rhinopithecus_roxellana
ENSDARG00000005315	celf1	100	88.757	ENSSBOG00000021912	CELF1	95	74.802	Saimiri_boliviensis_boliviensis
ENSDARG00000005315	celf1	100	89.349	ENSSHAG00000017438	CELF1	100	84.752	Sarcophilus_harrisii
ENSDARG00000005315	celf1	100	96.491	ENSSFOG00015019353	celf1	100	90.654	Scleropages_formosus
ENSDARG00000005315	celf1	100	97.041	ENSSMAG00000013827	celf1	100	85.793	Scophthalmus_maximus
ENSDARG00000005315	celf1	100	96.450	ENSSDUG00000011558	celf1	100	85.240	Seriola_dumerili
ENSDARG00000005315	celf1	100	96.450	ENSSLDG00000012863	celf1	100	85.424	Seriola_lalandi_dorsalis
ENSDARG00000005315	celf1	100	89.865	ENSSARG00000003207	CELF1	100	78.854	Sorex_araneus
ENSDARG00000005315	celf1	100	89.349	ENSSPUG00000004228	CELF1	95	84.118	Sphenodon_punctatus
ENSDARG00000005315	celf1	100	95.858	ENSSPAG00000009569	celf1	100	91.617	Stegastes_partitus
ENSDARG00000005315	celf1	100	88.757	ENSSSCG00000013233	CELF1	100	83.004	Sus_scrofa
ENSDARG00000005315	celf1	100	88.757	ENSTGUG00000010377	CELF1	95	82.387	Taeniopygia_guttata
ENSDARG00000005315	celf1	100	96.450	ENSTRUG00000000617	celf1	100	66.926	Takifugu_rubripes
ENSDARG00000005315	celf1	100	73.964	ENSTBEG00000005140	CELF1	79	91.729	Tupaia_belangeri
ENSDARG00000005315	celf1	100	88.757	ENSTTRG00000014157	CELF1	100	83.004	Tursiops_truncatus
ENSDARG00000005315	celf1	100	88.757	ENSUAMG00000000223	CELF1	95	80.392	Ursus_americanus
ENSDARG00000005315	celf1	100	88.757	ENSUMAG00000009218	CELF1	95	83.004	Ursus_maritimus
ENSDARG00000005315	celf1	100	88.757	ENSVPAG00000000336	CELF1	87	94.382	Vicugna_pacos
ENSDARG00000005315	celf1	100	88.757	ENSVVUG00000023439	CELF1	100	83.004	Vulpes_vulpes
ENSDARG00000005315	celf1	100	86.391	ENSXETG00000009044	celf1	100	80.588	Xenopus_tropicalis
ENSDARG00000005315	celf1	93	94.030	ENSXCOG00000017706	-	87	63.764	Xiphophorus_couchianus
ENSDARG00000005315	celf1	100	92.308	ENSXMAG00000029339	-	100	73.176	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0001889	liver development	24005864.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	24005864.	IDA	Function
GO:0003729	mRNA binding	22899848.	IPI	Function
GO:0003730	mRNA 3'-UTR binding	22899848.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	16168720.	IDA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006376	mRNA splice site selection	21873635.	IBA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0007368	determination of left/right symmetry	22899848.	IMP	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016477	cell migration	24005864.	IMP	Process
GO:0031016	pancreas development	24005864.	IMP	Process
GO:0045495	pole plasm	16168720.	IDA	Component
GO:0048565	digestive tract development	24005864.	IMP	Process
GO:0048588	developmental cell growth	24005864.	IMP	Process
GO:0061014	positive regulation of mRNA catabolic process	22899848.	IMP	Process
GO:0061031	endodermal digestive tract morphogenesis	24005864.	IMP	Process
GO:0061113	pancreas morphogenesis	24005864.	IMP	Process
GO:0070306	lens fiber cell differentiation	29565969.	IMP	Process
GO:1990402	embryonic liver development	24005864.	IMP	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component