EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000005355 (Gene tree)
Gene ID: 334471
Gene Symbol: larp6a
Alias: acheron|achn|fi75f12|larp6|wu:fi75f12|zgc:66107
Full Name: La ribonucleoprotein domain family%2C member 6a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 21242 bases
Position: chr18:173603-194844
Accession: ZDB-GENE-030131-6403
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000114792	La	PF05383.17	7.7e-19	1	1
ENSDARP00000153929	La	PF05383.17	9.2e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000140897	-	1877	-	ENSDARP00000114792	429 (aa)	-	F1QDH4
ENSDART00000185918	-	2245	-	ENSDARP00000153929	485 (aa)	-	Q6PHD4

Gene Model

Click here to download ENSDARG00000005355's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000005355's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000005355	larp6a	96	39.813	ENSDARG00000003968	larp6b	91	48.361

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000005355	larp6a	97	61.033	ENSG00000166173	LARP6	87	58.036	Homo_sapiens
ENSDARG00000005355	larp6a	99	85.185	ENSAPOG00000021773	larp6a	69	82.983	Acanthochromis_polyacanthus
ENSDARG00000005355	larp6a	97	61.033	ENSAMEG00000008897	LARP6	97	60.890	Ailuropoda_melanoleuca
ENSDARG00000005355	larp6a	99	85.681	ENSACIG00000005166	larp6a	94	83.019	Amphilophus_citrinellus
ENSDARG00000005355	larp6a	99	85.219	ENSAOCG00000002284	larp6a	69	83.019	Amphiprion_ocellaris
ENSDARG00000005355	larp6a	99	85.219	ENSAPEG00000008077	larp6a	92	83.019	Amphiprion_percula
ENSDARG00000005355	larp6a	99	84.296	ENSATEG00000004018	larp6a	68	82.180	Anabas_testudineus
ENSDARG00000005355	larp6a	96	61.085	ENSAPLG00000009914	LARP6	98	60.849	Anas_platyrhynchos
ENSDARG00000005355	larp6a	97	61.244	ENSACAG00000008613	LARP6	97	60.766	Anolis_carolinensis
ENSDARG00000005355	larp6a	97	61.268	ENSANAG00000024860	LARP6	87	58.259	Aotus_nancymaae
ENSDARG00000005355	larp6a	99	84.722	ENSACLG00000018561	larp6a	67	82.143	Astatotilapia_calliptera
ENSDARG00000005355	larp6a	95	41.667	ENSAMXG00000036816	-	92	40.476	Astyanax_mexicanus
ENSDARG00000005355	larp6a	99	86.207	ENSAMXG00000029387	larp6a	75	81.489	Astyanax_mexicanus
ENSDARG00000005355	larp6a	97	61.033	ENSBTAG00000003915	LARP6	87	58.259	Bos_taurus
ENSDARG00000005355	larp6a	97	61.033	ENSCJAG00000046236	-	87	58.036	Callithrix_jacchus
ENSDARG00000005355	larp6a	97	61.033	ENSCJAG00000018642	-	87	58.036	Callithrix_jacchus
ENSDARG00000005355	larp6a	97	60.798	ENSCAFG00000017616	LARP6	97	58.430	Canis_familiaris
ENSDARG00000005355	larp6a	97	60.798	ENSCAFG00020007296	LARP6	88	57.812	Canis_lupus_dingo
ENSDARG00000005355	larp6a	97	61.033	ENSCHIG00000013742	LARP6	87	58.259	Capra_hircus
ENSDARG00000005355	larp6a	97	60.094	ENSTSYG00000028124	LARP6	85	57.737	Carlito_syrichta
ENSDARG00000005355	larp6a	96	59.811	ENSCAPG00000015452	LARP6	98	57.044	Cavia_aperea
ENSDARG00000005355	larp6a	96	59.811	ENSCPOG00000022687	LARP6	87	56.696	Cavia_porcellus
ENSDARG00000005355	larp6a	97	61.033	ENSCCAG00000036320	LARP6	87	58.036	Cebus_capucinus
ENSDARG00000005355	larp6a	97	61.033	ENSCATG00000042432	LARP6	87	58.036	Cercocebus_atys
ENSDARG00000005355	larp6a	96	60.520	ENSCLAG00000007893	LARP6	87	57.366	Chinchilla_lanigera
ENSDARG00000005355	larp6a	97	61.033	ENSCSAG00000013672	LARP6	87	58.036	Chlorocebus_sabaeus
ENSDARG00000005355	larp6a	96	59.670	ENSCHOG00000003318	LARP6	90	57.143	Choloepus_hoffmanni
ENSDARG00000005355	larp6a	96	62.945	ENSCPBG00000010771	LARP6	88	60.768	Chrysemys_picta_bellii
ENSDARG00000005355	larp6a	97	61.033	ENSCANG00000025833	LARP6	98	58.430	Colobus_angolensis_palliatus
ENSDARG00000005355	larp6a	96	61.176	ENSCGRG00001024472	Larp6	87	58.259	Cricetulus_griseus_chok1gshd
ENSDARG00000005355	larp6a	96	61.176	ENSCGRG00000004527	Larp6	87	58.259	Cricetulus_griseus_crigri
ENSDARG00000005355	larp6a	99	85.253	ENSCSEG00000011196	larp6a	71	82.636	Cynoglossus_semilaevis
ENSDARG00000005355	larp6a	99	83.834	ENSCVAG00000009605	larp6a	71	81.761	Cyprinodon_variegatus
ENSDARG00000005355	larp6a	96	60.520	ENSDNOG00000042993	LARP6	95	54.845	Dasypus_novemcinctus
ENSDARG00000005355	larp6a	97	59.485	ENSDORG00000023910	Larp6	95	55.579	Dipodomys_ordii
ENSDARG00000005355	larp6a	71	64.141	ENSETEG00000020390	LARP6	62	62.617	Echinops_telfairi
ENSDARG00000005355	larp6a	97	61.033	ENSEASG00005005490	LARP6	64	60.317	Equus_asinus_asinus
ENSDARG00000005355	larp6a	97	61.033	ENSECAG00000014190	LARP6	94	58.108	Equus_caballus
ENSDARG00000005355	larp6a	99	82.766	ENSELUG00000007341	larp6a	72	79.596	Esox_lucius
ENSDARG00000005355	larp6a	97	60.094	ENSFCAG00000001361	LARP6	87	57.366	Felis_catus
ENSDARG00000005355	larp6a	97	62.061	ENSFALG00000012389	LARP6	92	61.451	Ficedula_albicollis
ENSDARG00000005355	larp6a	97	59.859	ENSFDAG00000019994	LARP6	82	57.604	Fukomys_damarensis
ENSDARG00000005355	larp6a	99	83.603	ENSFHEG00000010312	larp6a	69	81.551	Fundulus_heteroclitus
ENSDARG00000005355	larp6a	96	62.118	ENSGALG00000004046	LARP6	87	60.455	Gallus_gallus
ENSDARG00000005355	larp6a	99	83.141	ENSGAFG00000009426	larp6a	68	82.819	Gambusia_affinis
ENSDARG00000005355	larp6a	99	82.639	ENSGACG00000014622	larp6a	99	82.679	Gasterosteus_aculeatus
ENSDARG00000005355	larp6a	88	61.240	ENSGAGG00000010802	LARP6	63	59.770	Gopherus_agassizii
ENSDARG00000005355	larp6a	97	61.033	ENSGGOG00000024151	LARP6	98	58.430	Gorilla_gorilla
ENSDARG00000005355	larp6a	99	84.491	ENSHBUG00000021014	larp6a	67	81.933	Haplochromis_burtoni
ENSDARG00000005355	larp6a	97	61.033	ENSHGLG00000015112	LARP6	87	58.482	Heterocephalus_glaber_female
ENSDARG00000005355	larp6a	97	61.033	ENSHGLG00100013159	LARP6	98	58.661	Heterocephalus_glaber_male
ENSDARG00000005355	larp6a	99	83.063	ENSHCOG00000001241	larp6a	92	80.376	Hippocampus_comes
ENSDARG00000005355	larp6a	95	39.078	ENSIPUG00000002828	-	96	37.825	Ictalurus_punctatus
ENSDARG00000005355	larp6a	99	83.827	ENSIPUG00000010187	larp6	74	80.567	Ictalurus_punctatus
ENSDARG00000005355	larp6a	96	60.757	ENSSTOG00000024279	LARP6	93	57.589	Ictidomys_tridecemlineatus
ENSDARG00000005355	larp6a	96	60.706	ENSJJAG00000011013	Larp6	96	55.010	Jaculus_jaculus
ENSDARG00000005355	larp6a	99	83.603	ENSKMAG00000001702	larp6a	66	81.342	Kryptolebias_marmoratus
ENSDARG00000005355	larp6a	99	81.755	ENSLBEG00000000170	larp6a	92	79.665	Labrus_bergylta
ENSDARG00000005355	larp6a	95	41.844	ENSLACG00000002786	-	95	45.714	Latimeria_chalumnae
ENSDARG00000005355	larp6a	97	68.884	ENSLACG00000018706	LARP6	89	65.532	Latimeria_chalumnae
ENSDARG00000005355	larp6a	95	44.235	ENSLOCG00000008547	-	80	44.418	Lepisosteus_oculatus
ENSDARG00000005355	larp6a	98	80.189	ENSLOCG00000014592	larp6a	71	76.793	Lepisosteus_oculatus
ENSDARG00000005355	larp6a	96	61.939	ENSLAFG00000016343	LARP6	96	60.771	Loxodonta_africana
ENSDARG00000005355	larp6a	97	61.033	ENSMFAG00000035507	LARP6	95	58.036	Macaca_fascicularis
ENSDARG00000005355	larp6a	97	61.033	ENSMMUG00000004429	LARP6	90	58.036	Macaca_mulatta
ENSDARG00000005355	larp6a	97	61.033	ENSMNEG00000045335	LARP6	87	58.036	Macaca_nemestrina
ENSDARG00000005355	larp6a	97	61.033	ENSMLEG00000038587	LARP6	98	58.430	Mandrillus_leucophaeus
ENSDARG00000005355	larp6a	99	84.527	ENSMAMG00000005261	larp6a	68	82.180	Mastacembelus_armatus
ENSDARG00000005355	larp6a	99	84.722	ENSMZEG00005005774	larp6a	67	82.143	Maylandia_zebra
ENSDARG00000005355	larp6a	96	63.270	ENSMGAG00000005077	LARP6	98	62.796	Meleagris_gallopavo
ENSDARG00000005355	larp6a	96	61.412	ENSMAUG00000018486	Larp6	87	58.259	Mesocricetus_auratus
ENSDARG00000005355	larp6a	96	59.670	ENSMICG00000011234	LARP6	87	57.143	Microcebus_murinus
ENSDARG00000005355	larp6a	96	61.176	ENSMOCG00000010492	Larp6	87	58.259	Microtus_ochrogaster
ENSDARG00000005355	larp6a	99	83.372	ENSMMOG00000016284	larp6a	96	79.796	Mola_mola
ENSDARG00000005355	larp6a	96	58.392	ENSMODG00000009034	LARP6	92	54.357	Monodelphis_domestica
ENSDARG00000005355	larp6a	97	84.248	ENSMALG00000014439	larp6a	89	81.857	Monopterus_albus
ENSDARG00000005355	larp6a	96	60.941	MGP_CAROLIEiJ_G0032314	Larp6	87	58.036	Mus_caroli
ENSDARG00000005355	larp6a	96	60.706	ENSMUSG00000034839	Larp6	87	57.812	Mus_musculus
ENSDARG00000005355	larp6a	96	60.941	MGP_PahariEiJ_G0015180	Larp6	87	58.036	Mus_pahari
ENSDARG00000005355	larp6a	96	60.941	MGP_SPRETEiJ_G0033452	Larp6	87	58.036	Mus_spretus
ENSDARG00000005355	larp6a	97	60.329	ENSMPUG00000017086	LARP6	97	58.065	Mustela_putorius_furo
ENSDARG00000005355	larp6a	97	60.798	ENSMLUG00000010319	LARP6	87	58.259	Myotis_lucifugus
ENSDARG00000005355	larp6a	96	60.471	ENSNGAG00000014238	Larp6	87	57.366	Nannospalax_galili
ENSDARG00000005355	larp6a	99	84.722	ENSNBRG00000008120	larp6a	92	82.143	Neolamprologus_brichardi
ENSDARG00000005355	larp6a	97	61.033	ENSNLEG00000013691	LARP6	87	58.036	Nomascus_leucogenys
ENSDARG00000005355	larp6a	81	64.706	ENSMEUG00000002270	LARP6	83	66.667	Notamacropus_eugenii
ENSDARG00000005355	larp6a	82	56.510	ENSOPRG00000004868	-	99	56.233	Ochotona_princeps
ENSDARG00000005355	larp6a	96	58.711	ENSODEG00000015958	LARP6	87	56.916	Octodon_degus
ENSDARG00000005355	larp6a	99	84.722	ENSONIG00000002901	larp6a	92	81.799	Oreochromis_niloticus
ENSDARG00000005355	larp6a	97	58.950	ENSOCUG00000009306	LARP6	99	56.036	Oryctolagus_cuniculus
ENSDARG00000005355	larp6a	97	83.971	ENSORLG00000014256	larp6a	92	81.385	Oryzias_latipes
ENSDARG00000005355	larp6a	99	82.217	ENSORLG00020019657	larp6a	69	79.874	Oryzias_latipes_hni
ENSDARG00000005355	larp6a	99	82.679	ENSORLG00015017915	larp6a	69	80.294	Oryzias_latipes_hsok
ENSDARG00000005355	larp6a	99	82.910	ENSOMEG00000017049	larp6a	71	78.980	Oryzias_melastigma
ENSDARG00000005355	larp6a	94	61.071	ENSOGAG00000000522	LARP6	87	57.428	Otolemur_garnettii
ENSDARG00000005355	larp6a	97	60.798	ENSOARG00000018750	LARP6	96	58.525	Ovis_aries
ENSDARG00000005355	larp6a	97	61.033	ENSPPAG00000031247	LARP6	98	58.430	Pan_paniscus
ENSDARG00000005355	larp6a	97	59.859	ENSPPRG00000011282	LARP6	87	57.143	Panthera_pardus
ENSDARG00000005355	larp6a	97	60.563	ENSPTIG00000015318	LARP6	84	57.737	Panthera_tigris_altaica
ENSDARG00000005355	larp6a	97	61.033	ENSPTRG00000007234	LARP6	87	58.036	Pan_troglodytes
ENSDARG00000005355	larp6a	97	61.033	ENSPANG00000016362	LARP6	87	58.036	Papio_anubis
ENSDARG00000005355	larp6a	99	77.523	ENSPKIG00000020103	larp6a	92	74.286	Paramormyrops_kingsleyae
ENSDARG00000005355	larp6a	99	79.043	ENSPKIG00000004511	LARP6	73	75.610	Paramormyrops_kingsleyae
ENSDARG00000005355	larp6a	63	71.154	ENSPSIG00000009071	LARP6	89	65.789	Pelodiscus_sinensis
ENSDARG00000005355	larp6a	99	85.681	ENSPMGG00000006958	larp6a	95	82.390	Periophthalmus_magnuspinnatus
ENSDARG00000005355	larp6a	96	60.000	ENSPEMG00000012909	Larp6	87	57.143	Peromyscus_maniculatus_bairdii
ENSDARG00000005355	larp6a	97	58.216	ENSPCIG00000020765	LARP6	91	54.959	Phascolarctos_cinereus
ENSDARG00000005355	larp6a	99	84.296	ENSPFOG00000014175	larp6a	92	82.046	Poecilia_formosa
ENSDARG00000005355	larp6a	99	84.296	ENSPLAG00000011105	larp6a	68	82.390	Poecilia_latipinna
ENSDARG00000005355	larp6a	99	84.527	ENSPMEG00000011085	larp6a	69	82.390	Poecilia_mexicana
ENSDARG00000005355	larp6a	99	83.603	ENSPREG00000008067	larp6a	69	82.809	Poecilia_reticulata
ENSDARG00000005355	larp6a	97	61.033	ENSPPYG00000006604	LARP6	87	58.036	Pongo_abelii
ENSDARG00000005355	larp6a	71	64.118	ENSPCAG00000014197	LARP6	71	64.118	Procavia_capensis
ENSDARG00000005355	larp6a	97	59.535	ENSPCOG00000022934	LARP6	87	56.858	Propithecus_coquereli
ENSDARG00000005355	larp6a	97	61.502	ENSPVAG00000005618	LARP6	87	58.705	Pteropus_vampyrus
ENSDARG00000005355	larp6a	99	84.722	ENSPNYG00000009835	larp6a	92	82.143	Pundamilia_nyererei
ENSDARG00000005355	larp6a	99	85.057	ENSPNAG00000017966	larp6a	81	81.212	Pygocentrus_nattereri
ENSDARG00000005355	larp6a	96	60.000	ENSRNOG00000012438	Larp6	87	58.036	Rattus_norvegicus
ENSDARG00000005355	larp6a	97	61.033	ENSRBIG00000032902	LARP6	86	58.525	Rhinopithecus_bieti
ENSDARG00000005355	larp6a	97	61.033	ENSRROG00000043074	LARP6	87	58.036	Rhinopithecus_roxellana
ENSDARG00000005355	larp6a	97	61.268	ENSSBOG00000024190	LARP6	98	58.661	Saimiri_boliviensis_boliviensis
ENSDARG00000005355	larp6a	97	57.820	ENSSHAG00000018495	LARP6	97	57.683	Sarcophilus_harrisii
ENSDARG00000005355	larp6a	99	74.083	ENSSFOG00015002254	LARP6	93	71.546	Scleropages_formosus
ENSDARG00000005355	larp6a	99	80.139	ENSSFOG00015023268	larp6a	92	76.310	Scleropages_formosus
ENSDARG00000005355	larp6a	99	84.687	ENSSMAG00000009953	larp6a	68	82.316	Scophthalmus_maximus
ENSDARG00000005355	larp6a	99	84.988	ENSSDUG00000007438	larp6a	68	82.600	Seriola_dumerili
ENSDARG00000005355	larp6a	99	84.988	ENSSLDG00000016647	larp6a	68	82.600	Seriola_lalandi_dorsalis
ENSDARG00000005355	larp6a	96	62.440	ENSSPUG00000011312	LARP6	97	62.440	Sphenodon_punctatus
ENSDARG00000005355	larp6a	99	85.219	ENSSPAG00000020502	larp6a	68	83.019	Stegastes_partitus
ENSDARG00000005355	larp6a	97	61.268	ENSSSCG00000004974	LARP6	87	58.482	Sus_scrofa
ENSDARG00000005355	larp6a	96	62.175	ENSTGUG00000005808	LARP6	98	61.939	Taeniopygia_guttata
ENSDARG00000005355	larp6a	99	82.258	ENSTRUG00000003151	larp6a	71	81.042	Takifugu_rubripes
ENSDARG00000005355	larp6a	99	79.032	ENSTNIG00000011926	larp6a	97	77.406	Tetraodon_nigroviridis
ENSDARG00000005355	larp6a	96	60.000	ENSTBEG00000015077	LARP6	98	57.639	Tupaia_belangeri
ENSDARG00000005355	larp6a	97	61.268	ENSUAMG00000010467	LARP6	84	60.798	Ursus_americanus
ENSDARG00000005355	larp6a	97	60.563	ENSVVUG00000015227	LARP6	92	58.199	Vulpes_vulpes
ENSDARG00000005355	larp6a	97	64.846	ENSXETG00000020340	larp6	93	61.702	Xenopus_tropicalis
ENSDARG00000005355	larp6a	99	83.141	ENSXCOG00000012654	larp6a	99	80.000	Xiphophorus_couchianus
ENSDARG00000005355	larp6a	99	83.372	ENSXMAG00000021015	larp6a	66	81.551	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001756	somitogenesis	19481601.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	28400296.	IDA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006417	regulation of translation	-	IEA	Process
GO:1990904	ribonucleoprotein complex	-	IEA	Component