EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000005551 (Gene tree)
Gene ID: 321556
Gene Symbol: hnrnph1l
Alias: fb19a06|wu:fb19a06|zgc:55399|zgc:85960
Full Name: heterogeneous nuclear ribonucleoprotein H1%2C like
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 12155 bases
Position: chr21:30169610-30181764
Accession: ZDB-GENE-030131-275
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000027385	zf-RNPHF	PF08080.12	6.8e-07	1	1
ENSDARP00000133349	zf-RNPHF	PF08080.12	6.8e-07	1	1
ENSDARP00000027385	RRM_1	PF00076.22	3e-31	1	3
ENSDARP00000027385	RRM_1	PF00076.22	3e-31	2	3
ENSDARP00000027385	RRM_1	PF00076.22	3e-31	3	3
ENSDARP00000133349	RRM_1	PF00076.22	3e-31	1	3
ENSDARP00000133349	RRM_1	PF00076.22	3e-31	2	3
ENSDARP00000133349	RRM_1	PF00076.22	3e-31	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000015636	-	1830	XM_021468753	ENSDARP00000027385	407 (aa)	XP_021324428	F1QFJ8
ENSDART00000065447	-	771	-	-	- (aa)	-	-
ENSDART00000167867	-	1255	-	ENSDARP00000133349	407 (aa)	-	F1QFJ8

Gene Model

Click here to download ENSDARG00000005551's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000005551's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000005551	hnrnph1l	94	58.743	ENSDARG00000039466	hnrnph3	97	63.780
ENSDARG00000005551	hnrnph1l	100	85.258	ENSDARG00000040881	hnrnph1	97	88.010
ENSDARG00000005551	hnrnph1l	80	39.077	ENSDARG00000053021	grsf1	70	39.385
ENSDARG00000005551	hnrnph1l	86	33.791	ENSDARG00000011245	esrp1	50	41.753

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000005551	hnrnph1l	99	86.029	ENSAPOG00000016614	hnrnph1	95	88.432	Acanthochromis_polyacanthus
ENSDARG00000005551	hnrnph1l	92	88.859	ENSACIG00000008964	hnrnph1	97	88.594	Amphilophus_citrinellus
ENSDARG00000005551	hnrnph1l	99	86.029	ENSAOCG00000008372	hnrnph1	95	88.946	Amphiprion_ocellaris
ENSDARG00000005551	hnrnph1l	99	85.784	ENSAPEG00000012980	hnrnph1	95	88.689	Amphiprion_percula
ENSDARG00000005551	hnrnph1l	99	85.784	ENSATEG00000002792	hnrnph1	95	88.689	Anabas_testudineus
ENSDARG00000005551	hnrnph1l	99	71.930	ENSACAG00000016323	-	77	80.627	Anolis_carolinensis
ENSDARG00000005551	hnrnph1l	84	87.955	ENSACLG00000003313	hnrnph1	91	86.217	Astatotilapia_calliptera
ENSDARG00000005551	hnrnph1l	100	85.437	ENSAMXG00000002483	hnrnph1	99	88.947	Astyanax_mexicanus
ENSDARG00000005551	hnrnph1l	99	87.224	ENSAMXG00000030703	hnrnph1l	81	89.313	Astyanax_mexicanus
ENSDARG00000005551	hnrnph1l	99	85.854	ENSCSEG00000015891	hnrnph1	94	89.203	Cynoglossus_semilaevis
ENSDARG00000005551	hnrnph1l	99	84.767	ENSCVAG00000014097	hnrnph1	95	87.147	Cyprinodon_variegatus
ENSDARG00000005551	hnrnph1l	99	87.368	ENSELUG00000021437	-	99	90.026	Esox_lucius
ENSDARG00000005551	hnrnph1l	100	81.560	ENSELUG00000006715	hnrnph1	97	81.572	Esox_lucius
ENSDARG00000005551	hnrnph1l	99	85.185	ENSFHEG00000008474	hnrnph1	96	86.632	Fundulus_heteroclitus
ENSDARG00000005551	hnrnph1l	93	82.188	ENSGMOG00000006782	hnrnph1	97	80.407	Gadus_morhua
ENSDARG00000005551	hnrnph1l	99	85.995	ENSGAFG00000006280	hnrnph1	95	88.432	Gambusia_affinis
ENSDARG00000005551	hnrnph1l	85	87.209	ENSGACG00000018352	hnrnph1	95	81.726	Gasterosteus_aculeatus
ENSDARG00000005551	hnrnph1l	84	87.955	ENSHBUG00000010547	hnrnph1	92	86.217	Haplochromis_burtoni
ENSDARG00000005551	hnrnph1l	99	76.777	ENSHCOG00000004513	hnrnph1	95	79.851	Hippocampus_comes
ENSDARG00000005551	hnrnph1l	97	88.579	ENSIPUG00000024047	hnrnph1l	93	87.563	Ictalurus_punctatus
ENSDARG00000005551	hnrnph1l	100	83.738	ENSIPUG00000018262	hnrnph1	95	86.990	Ictalurus_punctatus
ENSDARG00000005551	hnrnph1l	99	84.146	ENSKMAG00000018802	hnrnph1	95	86.224	Kryptolebias_marmoratus
ENSDARG00000005551	hnrnph1l	99	85.049	ENSLBEG00000027811	hnrnph1	95	87.918	Labrus_bergylta
ENSDARG00000005551	hnrnph1l	93	83.088	ENSLOCG00000012510	hnrnph1	92	82.353	Lepisosteus_oculatus
ENSDARG00000005551	hnrnph1l	99	56.250	ENSMMUG00000017392	-	76	56.433	Macaca_mulatta
ENSDARG00000005551	hnrnph1l	99	56.250	ENSMNEG00000030544	-	76	56.433	Macaca_nemestrina
ENSDARG00000005551	hnrnph1l	86	84.906	ENSMAMG00000011478	hnrnph1	93	85.143	Mastacembelus_armatus
ENSDARG00000005551	hnrnph1l	99	85.995	ENSMZEG00005009791	hnrnph1	95	88.432	Maylandia_zebra
ENSDARG00000005551	hnrnph1l	92	85.827	ENSMMOG00000009064	hnrnph1	98	85.564	Mola_mola
ENSDARG00000005551	hnrnph1l	75	52.976	ENSMODG00000002200	-	84	52.448	Monodelphis_domestica
ENSDARG00000005551	hnrnph1l	88	88.022	ENSMALG00000003999	hnrnph1	94	86.589	Monopterus_albus
ENSDARG00000005551	hnrnph1l	84	87.955	ENSNBRG00000015406	hnrnph1	94	86.217	Neolamprologus_brichardi
ENSDARG00000005551	hnrnph1l	99	85.995	ENSONIG00000017754	hnrnph1	95	88.432	Oreochromis_niloticus
ENSDARG00000005551	hnrnph1l	99	83.816	ENSORLG00000006932	hnrnph1	95	86.076	Oryzias_latipes
ENSDARG00000005551	hnrnph1l	99	83.575	ENSORLG00020007881	hnrnph1	95	85.823	Oryzias_latipes_hni
ENSDARG00000005551	hnrnph1l	99	83.816	ENSORLG00015005306	hnrnph1	95	86.076	Oryzias_latipes_hsok
ENSDARG00000005551	hnrnph1l	99	85.575	ENSOMEG00000009827	hnrnph1	98	89.125	Oryzias_melastigma
ENSDARG00000005551	hnrnph1l	100	88.235	ENSPKIG00000018203	hnrnph1l	97	88.579	Paramormyrops_kingsleyae
ENSDARG00000005551	hnrnph1l	94	81.436	ENSPKIG00000009532	-	95	79.952	Paramormyrops_kingsleyae
ENSDARG00000005551	hnrnph1l	99	84.804	ENSPMGG00000012151	hnrnph1	95	87.661	Periophthalmus_magnuspinnatus
ENSDARG00000005551	hnrnph1l	99	85.995	ENSPFOG00000004097	hnrnph1	95	88.432	Poecilia_formosa
ENSDARG00000005551	hnrnph1l	99	85.995	ENSPLAG00000011771	hnrnph1	95	88.432	Poecilia_latipinna
ENSDARG00000005551	hnrnph1l	99	86.241	ENSPMEG00000019446	hnrnph1	95	88.689	Poecilia_mexicana
ENSDARG00000005551	hnrnph1l	99	86.241	ENSPREG00000005780	hnrnph1	95	88.689	Poecilia_reticulata
ENSDARG00000005551	hnrnph1l	99	85.995	ENSPNYG00000000204	hnrnph1	95	88.432	Pundamilia_nyererei
ENSDARG00000005551	hnrnph1l	100	85.437	ENSPNAG00000000439	hnrnph1	98	88.144	Pygocentrus_nattereri
ENSDARG00000005551	hnrnph1l	100	89.051	ENSPNAG00000002784	hnrnph1l	96	89.848	Pygocentrus_nattereri
ENSDARG00000005551	hnrnph1l	97	88.442	ENSSFOG00015022796	hnrnph1l	99	87.139	Scleropages_formosus
ENSDARG00000005551	hnrnph1l	96	88.747	ENSSFOG00015016055	-	96	88.747	Scleropages_formosus
ENSDARG00000005551	hnrnph1l	97	83.668	ENSSMAG00000007820	hnrnph1	95	86.458	Scophthalmus_maximus
ENSDARG00000005551	hnrnph1l	99	86.029	ENSSDUG00000008785	hnrnph1	95	88.946	Seriola_dumerili
ENSDARG00000005551	hnrnph1l	99	86.029	ENSSLDG00000010685	hnrnph1	95	88.946	Seriola_lalandi_dorsalis
ENSDARG00000005551	hnrnph1l	99	86.029	ENSSPAG00000009921	hnrnph1	95	88.432	Stegastes_partitus
ENSDARG00000005551	hnrnph1l	99	84.236	ENSTRUG00000020069	hnrnph1	95	87.661	Takifugu_rubripes
ENSDARG00000005551	hnrnph1l	99	73.349	ENSXETG00000018321	hnrnph1	79	78.510	Xenopus_tropicalis
ENSDARG00000005551	hnrnph1l	92	85.714	ENSXCOG00000009133	hnrnph1	97	83.929	Xiphophorus_couchianus
ENSDARG00000005551	hnrnph1l	92	89.390	ENSXMAG00000021332	hnrnph1	98	89.125	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function